ID GU456686; SV 1; circular; genomic DNA; STD; VRL; 2974 BP. XX AC GU456686; XX DT 06-JUL-2010 (Rel. 105, Created) DT 06-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Turnip curly top virus isolate IR:Hom1:2k:09, complete genome. XX KW . XX OS Turnip curly top virus OC Viruses; Geminiviridae; Turncurtovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2974 RX DOI; 10.1016/j.virusres.2010.05.016. RX PUBMED; 20566344. RA Briddon R.W., Heydarnejad J., Khosrowfar F., Massumi H., Martin D.P., RA Varsani A.; RT "Turnip curly top virus, a highly divergent geminivirus infecting turnip in RT Iran"; RL Virus Res. 152(1-2):169-175(2010). XX RN [2] RP 1-2974 RA Varsani A., Briddon R.W., Heydarnejad J., Khosrowfar F., Massumi H., RA Martin D.P.; RT ; RL Submitted (13-JAN-2010) to the INSDC. RL Electron microscope Unit, University of CapeTown, Rondebosch, Cape Town, WP RL 7701, South Africa XX DR MD5; 08219093bbce1d3f88ae2333b53cf9cf. XX FH Key Location/Qualifiers FH FT source 1..2974 FT /organism="Turnip curly top virus" FT /host="Brassica rapa" FT /isolate="IR:Hom1:2k:09" FT /mol_type="genomic DNA" FT /country="Iran" FT /lat_lon="29.69 N 52.17 E" FT /collection_date="2009" FT /db_xref="taxon:859650" FT CDS 233..607 FT /codon_start=1 FT /product="V2" FT /db_xref="UniProtKB/TrEMBL:D8WZ32" FT /protein_id="ADJ58426.1" FT /translation="MIWRVNKDEKRVRAFRYKKRRFYSLAEYLLAPLATHLCKARIFPD FT DKYFVPAYTDEAYSFLVFLKEETRTPFQILKDEWNVEFKEIEVELSRLRFGPKDPGEEA FT CSEESPVQQSSPVQSSSCET" FT CDS 462..1292 FT /codon_start=1 FT /product="coat protein" FT /note="V1" FT /db_xref="GOA:D8WZ33" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:D8WZ33" FT /protein_id="ADJ58427.1" FT /translation="MSGTWSLKRSRWNSPGYDLAPKTPAKRPAVRRALFNNQVQYSRVA FT ARRRWSKVSVRGNKPYRSRRLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR FT DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY FT KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPIKKPIRMKFRNI FT WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY" FT CDS complement(1289..1711) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:D8WZ34" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D8WZ34" FT /protein_id="ADJ58431.1" FT /translation="MNVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWTHQESGF FT FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRNLTGQRFTTIFLKRLLFYLNNYGIIS FT LNLVINGISHVLFDDFNFVESVIHQEYRVAMKEEFY" FT CDS complement(1416..1844) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:D8WZ35" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D8WZ35" FT /protein_id="ADJ58430.1" FT /translation="MKPLSPGVYKIQSSQRSRNLSSISRVIKKSKTVLLPCKCKFTIHH FT ECGEGFTHRGTHHASSIDDWNIHTPSTQPIPPQTNIMDPPGERVLQHQIAAPLQLQSTE FT AAGITHGLDRIHGIGSSPEFDWTKIYDDFFEEITLLPK" FT CDS complement(1732..2847) FT /codon_start=1 FT /product="Rep" FT /note="C1" FT /db_xref="GOA:D8WZ36" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D8WZ36" FT /protein_id="ADJ58429.1" FT /translation="MPRTPRQYRIHAKNIFLTYPHCHLTKEEALLQLQAIQCPSTKKFI FT RICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSY FT IEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF FT HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNSPAGPSKYKVIP FT SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL FT KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS FT WSLQNSVFTTIQEPLFNITSDQEVEDSTPSL" FT CDS complement(2430..2687) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D8WZ37" FT /protein_id="ADJ58428.1" FT /translation="MGNLISMCLSSSKEKSSSITPVISIYEMEVPVASATQIFRELNQA FT PTSSPISRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR" XX SQ Sequence 2974 BP; 799 A; 527 C; 740 G; 908 T; 0 other; accggatggc ccaaaaaaaa tttttggcgc gtatctgata gcgacatgcg cgtagtggag 60 aaggcgcgcc aaagttaaag tgataacgat tggtcattgt cgggtggtcc taaagtgttt 120 ccactatcga taatgcgtat tagtgcgatt acacgtggag ttgtactatg tagctccgaa 180 gctaagcttc gggtataaat ataggttcgg tatagtaatc ggttatataa aaatgatttg 240 gagagtaaat aaagatgaga aacgggttag ggcgtttagg tataaaaaaa gaaggtttta 300 ctctttagct gagtatttat tagccccatt ggctacccat ctttgtaagg ctcgtatatt 360 tccagacgat aagtattttg tcccagcgta taccgacgag gcgtatagtt tcctggtgtt 420 tcttaaggaa gaaactcgta ccccgtttca gatattgaag gatgagtgga acgtggagtt 480 taaagagatc gaggtggaac tctcccggtt acgatttggc cccaaagacc ccggcgaaga 540 ggcctgcagt gaggagagcc ctgttcaaca atcaagtcca gtacagtcga gtagctgcga 600 gacgtagatg gtccaaggtc tctgttcgag gtaataaacc gtatagatct cgtaggttaa 660 aggctagtga ttaccagatc tacaaggata agatcggtgg agataatggg tggacagtga 720 catttagtgg ggactgtact atgttgaata attacgttag aggtattggt agggaccagc 780 gtgactcggt aatgactaag accgcacata tgcattttaa tggtgtattg atggccaatg 840 atgctttctg ggaagcacct aattatatga ctatgtatag ttggattatt cttgataatg 900 atcctggtgg tacatttcca aagccctctg acatctttga tatggagtat aaagagtttc 960 cgtcgatgta tgaggtcgcc gagagtgtaa aatctcggtt tattgttaag aggaagacgg 1020 agcattattt acggtctacc ggtgttgcgt ttggggagaa acaaaattat aaggctccta 1080 atgttggtcc gattaagaag cctatacgga tgaagtttcg caatatatgg cagccctctg 1140 agtggaagga tacggctgga ggaaaatacg aggatttgaa gaaaggggct ttgttgtacg 1200 tatgtatttg tgataacaag gctactcaat tttcgtttaa tttgaaggga cagtggacca 1260 tgtatttcat aaatagagac ttaatgtatt aataaaactc ctctttcatt gcgacgcgat 1320 attcttgatg tattacagac tcgacaaagt tgaaatcatc aaataaaaca tgactaatac 1380 catttataac aagattaagg gatataatcc cgtaattatt taggtagaag agtaatctct 1440 tcaaaaaaat cgtcgtaaat ctttgtccag tcaaattccg gtgacgaccc aataccgtga 1500 attcgatcca agccatgtgt aatcccagct gcttccgtag attgtagttg aagcggagct 1560 gcaatctgat gttgaagaac ccgctctcct ggtgggtcca tgatattagt ttgaggtgga 1620 atgggttggg tacttggtgt atgtatgttc caatcgtcga ttgacgatgc gtgatgggtt 1680 cccctgtgcg taaatccctc accacattca tgatgaattg tgaatttgca cttacaagga 1740 aggagtactg tcttcgactt cttgatcact cgtgatattg aagagaggtt cctggatcgt 1800 tgtgaagact gaattttgta aactccagga cttaagggct tcattctctg gtttgtcgag 1860 gaagttttga tatgaggctc cgtctcctgg gttgcataaa atgatcgaag ggattccccc 1920 ttttataata cgtggcttcc cgtatttgag gtttgtctgc cactcctttt gcgcaccaat 1980 taagtgcttc cagtgcttca tctttagata atgggggtcc acgtcatcaa tcacgttgta 2040 agaaacgtcg tcgttgtata ctttagtgga gaagtcgaga tgaccggtta tgtaattatg 2100 agatccaagg gatcttgccc acagggtttt acctgttctt gaaggacctt ctatgattat 2160 tgatttaggt ctgtcgatag atggaattac cttatatttg ctcggccccg caggggaatt 2220 ggactcctcc agaaaaaaat tagactctaa ccaatccaaa atatcatctg ttaagacgaa 2280 ttgggtatgg ttgtatttgg ggacgtatcc tacaggagga ggattgaata tggccgctaa 2340 gtttggtttg aggttatgga attgaaagat gtaatcttta gggagtttct ccctaatgac 2400 agccaaagcg gcttcagcgg tacctgagtt taacgcctct gcacatgcat cattagccgt 2460 ctgttgacct cctcgtgcag atcgtgcatc gatctgaaat tcaccccagt cgatgtaatc 2520 tccgtccttc tcgatatagg acttgacgtc ggagcttgat ttagctccct gaatatttgg 2580 gtggcagatg cgaccggaac ctccatctcg taaatcgaaa tgacgggggt tatagagctg 2640 gatttttcct tcgaactgga taagcacatg gagatgaggt tccccattat cgtgcctttc 2700 tctacaaatt cgtatgaatt tctttgttga aggacactgt atagcttgta gttgcagaag 2760 agcttcttct ttagttagat ggcagtgagg gtatgttagg aaaatgtttt tagcatgaat 2820 gcgatattgc ctcggagtcc ttggcatttt cggtatttgt agaaatgaat tggggttacg 2880 cttaaactct attgtatcgg ggttactggg gttgtatata tagtgtggat tgtagaaggc 2940 ctcttgctca catttgggcc atccgtttaa tatt 2974 //