ID GU440580; SV 1; circular; genomic DNA; STD; VRL; 2743 BP. XX AC GU440580; XX DT 24-MAR-2010 (Rel. 104, Created) DT 24-MAR-2010 (Rel. 104, Last updated, Version 1) XX DE Cotton leaf curl virus LKO-2 isolate Lucknow, complete genome. XX KW . XX OS Cotton leaf curl virus LKO-2 OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2743 RA Kumar A., Kumar J., Khan J.A.; RT "A monopartite Begomovirus associated with cotton leaf curl disease"; RL Unpublished. XX RN [2] RP 1-2743 RA Kumar A., Kumar J., Khan J.A.; RT ; RL Submitted (11-JAN-2010) to the INSDC. RL Molecular Virology Lab, National Botanical Research Institute, Rana Pratap RL Marg, Lucknow, Uttar Pradesh 226001, India XX DR MD5; 235b1b89b31da7723d3655ec836a4a66. XX FH Key Location/Qualifiers FH FT source 1..2743 FT /organism="Cotton leaf curl virus LKO-2" FT /host="cotton" FT /isolate="Lucknow" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="leaf" FT /collected_by="Abhinav Kumar" FT /collection_date="Oct-2006" FT /clone="CLCuVLKO-2" FT /db_xref="taxon:727987" FT gene 133..480 FT /gene="AV2" FT CDS 133..480 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:D4NXM6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D4NXM6" FT /protein_id="ADD80780.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL FT ILVIRARDYVEASRRYSHFHSRFQGSSPAELRQPMSPCCCPHCPRHKQKEDMGQSAHVQ FT KAQDVQTLQKP" FT gene 293..1063 FT /gene="AV1" FT CDS 293..1063 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D4NXM7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4NXM7" FT /protein_id="ADD80781.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPCRRAVAPTVLVTNKRRTWV FT NRPMYKKPKMYRLYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICVSDVTRGNGLTHR FT VGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGHVFNMYDNEP FT STATVKNDMRDRFQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENH FT TENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1060..1464) FT /gene="AC3" FT CDS complement(1060..1464) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:D4NXM8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D4NXM8" FT /protein_id="ADD80782.1" FT /translation="MDSRTGELITATQAESGVYIWTVKNPLYFKISQHHERPFLSNNDI FT ITIQVQFNYNLRKALGIHQCFLICQIWTRLRPQTWRFLRVFNYQCMKYLNSLGVISINN FT VIRAMSHVLYNVLEGTIDAELSHIIKFNIY" FT gene complement(1204..1612) FT /gene="AC2" FT CDS complement(1205..1612) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:D4NXM9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D4NXM9" FT /protein_id="ADD80783.1" FT /translation="MQNSSPSPSRCTQVPIKVQHRIAKKRPLRRRRIDLPCGCSYYFGL FT DCASHGFTHRGTHHCNSGREWRVYLDGQKSPVFQDIPTPRETISIQQRHNHHTSPVQLQ FT PEESVGDTPVFSNLPNLDSFTSSDLAFLKSI" FT gene complement(1518..2594) FT /gene="AC1" FT CDS complement(1518..2594) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:D4NXN0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D4NXN0" FT /protein_id="ADD80784.1" FT /translation="MPRAFRLNAKNYFLTYPKCSLTKEEALSQLENLQTPVNKKYIRVC FT RELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSTTRSAHFHPNIQGAKSSSDVKSYLEK FT DGDTLDWGEFQIDGRSARGGQQTANDAYATALNASSKSEALRVIKELAPKDYVLQFHNL FT NANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWVSENVRDAAARPWRPISIVIEGESR FT TGKTMWARSLGPHNYLCGRLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPMQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWALKNAEFFTLTEPLYS FT GTHQSPAQNSQEETTSQT" FT gene complement(2141..2443) FT /gene="AC4" FT CDS complement(2141..2443) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D4NXN1" FT /protein_id="ADD80785.1" FT /translation="MGNLIFTCSSSSKGNTSARITDSSTWYPQPGQHISIRTFRELNQA FT QTSSPIWRRTETPSTGESFRSMEDLQEGVNRQPMTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2743 BP; 739 A; 546 C; 603 G; 855 T; 0 other; accggatggc cgcgattttt ttaaaagtgg tcccccccac tatctcgtgt cggccaataa 60 aaacgctccc tcagagttaa attagtggtg gtccctctat ttatatcttg gtcaccaagt 120 ttgttttcag aaatgtggga tccacttctc aacgagtttc ctgaaaccgt acatggtttt 180 aggtgtatgt tagcaattaa gtatttgcag ttagtagaaa atacgtattc tccagacaca 240 ttaggttacg atttaattcg tgatttaata ttagttatcc gtgcaagaga ttatgtcgaa 300 gcgtcccgcc gatatagtca tttccactcc cgcttccaag gttcgtcgcc ggctgaactt 360 cgacagccca tgtcgccgtg ctgttgcccc cactgtcctc gtcacaaaca aaaggaggac 420 atgggtcaat cggcccatgt acaaaaagcc caagatgtac agactttaca gaagccctga 480 tgttcccaag ggatgcgaag gtccgtgtaa ggtccagtct tatgaacaga gacatgatat 540 agcccataca ggcaaggtga tatgtgtttc tgatgttact cgtggtaatg ggcttactca 600 ccgtgtgggt aagagatttt gtgtgaagtc tatttatgtt ttgggtaaga tctggatgga 660 tgagaacatc aagaccaaga atcatacgaa cactgttatg ttcttcctgg ttcgtgatag 720 aaggcccttt ggtactgcta tggattttgg acatgttttc aacatgtatg acaatgaacc 780 cagtactgca actgtcaaga atgatatgag agatcgattt caggtcttaa ggaaatttac 840 tgcaacggtt acaggtggtc agtatgcttc caaggaacag gcattagtta ggaaatttat 900 gaagattaat aattatgtag tgtataatca tcaagaggct gccaagtatg aaaatcatac 960 tgagaacgct cttctattgt atatggcatg tacacatgcc agtaatcctg tgtatgcaac 1020 tttgaagatc agaatctatt tttatgattc tgttcagaat taataaatat tgaattttat 1080 tatatgggat aattcggcat caattgtgcc ttctaataca ttgtacaata cgtgagacat 1140 tgccctaatt acattattaa tactaataac tcctaaacta tttaaatatt tcatacattg 1200 ataattaaat actcttaaga aacgccaagt ctgaggacgt aaacgagtcc agatttggca 1260 aattagaaaa cactggtgta tccccaacgc tttcctcagg ttgtagttga actggacttg 1320 tatggtgatt atgtcgttgt tggatagaaa tggtctctcg tggtgttggg atatcttgaa 1380 atacagggga tttttgaccg tccaaatata cacgccactc tctgcctgag ttgcagtgat 1440 gagttcccct gtgcgtgaat ccatgtgatg cgcagtcaag tccaaaatag taagagcaac 1500 cgcagggaag atctattcta cgtctgcgaa gtggtctctt cttggctatt ctgtgctgga 1560 ctttgatggg tacctgagta caacggctcg gtgagggtga agaattctgc attctttaat 1620 gcccagtctt ttagtgctga attcttttcc tcatccaagt actctttata tgatgatgtc 1680 gggcctggat tgcagaggaa gatagtggga attccacctt taatttgcat gggcttcccg 1740 tattttgtgt tgctttgcca gtccctttgg gcccccatga actccttaaa gtgctttaga 1800 tagtggggat cgacgtcatc aatgacgttg taccaggcat cattactgta cacctttgga 1860 ctcaggtcaa ggcgaccaca taaatagtta tgtggaccca gagacctggc ccacatggtc 1920 ttccctgttc tactctcacc ctctatgact atactgatcg gtctccaagg ccgcgcagcg 1980 gcatccctta cattttctga tacccagcat tcaagttctt ctggaacttg atcgaaagaa 2040 gaagataaaa agggagaaac aaaaacctct aaaggaggtg caaaaatcct atctaaatta 2100 gcatttaaat tatgaaattg tagtacataa tctttgggtg ctaattcctt aatgactcta 2160 agagcctctg acttactgct tgcgttaagt gctgtggcgt aagcgtcatt ggctgtctgt 2220 tgaccccctc ttgcagatct tccatcgatc tgaaactctc cccagtcgag ggtgtctccg 2280 tccttctcca gataggactt gacgtctgag cttgatttag ctccctgaat gttcggatgg 2340 aaatgtgctg acctggttgt ggataccagg tcgaagaatc tgttattcgt gcactggtat 2400 ttcccttcga actggatgag cacgtgaaga tgaggttccc cattctcatg aagttccctg 2460 cagactctta tgtatttttt gtttactggg gtttgtaggt tttctaattg tgagagggct 2520 tcttctttag ttagagagca tttgggataa gtgaggaaat agttttttgc atttaatcta 2580 aaagcacgtg gcattttggc aatcggtgta caaactaatt ctatggcaat cggtgtattg 2640 gggtgcaata tatatgtgta caccaaatgg cattattgta atttgggaaa gaaattcaaa 2700 attcaaattt caaaattcca aaagcggcca tccgtctaat att 2743 //