ID GU396990; SV 1; linear; genomic RNA; STD; VRL; 6511 BP. XX AC GU396990; XX DT 05-MAR-2010 (Rel. 104, Created) DT 07-APR-2010 (Rel. 104, Last updated, Version 2) XX DE Oat blue dwarf virus isolate OBDV-2r, complete genome. XX KW . XX OS Oat blue dwarf virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RP 1-6511 RX DOI; 10.1007/s00705-010-0603-6. RX PUBMED; 20224895. RA Edwards M.C., Weiland J.J.; RT "First infectious clone of the propagatively transmitted Oat blue dwarf RT virus"; RL Arch. Virol. 155(4):463-470(2010). XX RN [2] RP 1-6511 RA Edwards M.C., Weiland J.J.; RT ; RL Submitted (07-JAN-2010) to the INSDC. RL Cereal Crops Research Unit, U.S. Dept. of Agriculture, Agricultural RL Research Service, 1307 North 18th Street, Fargo, ND 58105-5677, USA XX DR MD5; 8f7fa3ce717ab93e45dd124c2aa54f3f. DR EuropePMC; PMC6122807; 30180217. XX FH Key Location/Qualifiers FH FT source 1..6511 FT /organism="Oat blue dwarf virus" FT /host="oat" FT /isolate="OBDV-2r" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:56879" FT CDS 115..6318 FT /codon_start=1 FT /product="replicase-associated polyprotein" FT /note="possesses sequence motifs similar to FT methyltransferase, papain-like protease, helicase, and FT polymerase motifs that are present in nonstructural FT proteins of other positive strand RNA viruses" FT /db_xref="GOA:D3Y4E3" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D3Y4E3" FT /protein_id="ADD13602.1" FT /translation="MTTYAFHPLLPTPTSFATVTGGGLKDVIETLSSTIHRDTIAAPLM FT ETLASPYRDSLRDFPWAVPASALPFLQECGITVAGHGFKAHPHPVHKTIETHLLHKVWP FT HYAQVPSSVLFMKPSKFAKLQRGNANFSALHNYRLTAKDTPRYPNTSTSLPDTETAFMH FT DALMYYTPAQIVDLFLSCPKLEKLYASLVVPPESSFTSISLHPDLYRFRFDGDRLIYEL FT EGNPAHNYTQPRSALDWLRTTTIRGPGVSLTVSRLDSWGPCHSLLIQRGIPPMHAEHDS FT ISFRGPRAVAIPEPSSLHQDLRHRLVPEDVYNALFLYVRAVRTLRVTDPAGFVRTQCSK FT SEYAWVTSSAWDNLAHFALLTAPHRPRTSFYLFSSTFQRLEHWVRHHTFLLAGLTTAFA FT LPPSAWLANLVARTSASHIQGLALARRWLITPPHLFRPPSPPSFALLLQRNSTGPILLR FT GSRLEFEAFPSLAPQLARRFPFLARLLPQKPINPWIVASLAVAVAIPAASLAVRWFFGP FT DTPQAMHDRYHTMFHPREWRLTLPRGPISCGRSSFSPLPHPPSPTPAPDSRAGPLQPPS FT ALPSTHEPAPADLESPAPQAHAPQTEPPSPVIEQEARPDPFPAPAPRPAPTPSASAPSP FT APTPSAPEPPSPTASEQAASLIPAPSSALVVEPSGVVSASSWGATNQPADQVDDSPLAR FT DPSASGPVRFYRDLFPANYAGDSGTFDFRARASGRSPTPYPAMDCLLVATEQATRISRE FT ALWDCLTATCPDSFLDPKSIAQHGLSTDHFVILAHRFSLCANFHSAAHVIQLGMADATS FT TFMINHTAGSAGLPGHFSLRLGDQPRALNGGLAQDLAVAALRFNISGDLLPTRSVHTYR FT SWPKRAKNLVSNMKNGFDGVMASINPIRPSDAREKIVALDGLLDIAQPRSVRLIHIAGF FT PGCGKTHPITKLLHTAAFRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTWESSLLKSA FT RILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRLIPEVSHL FT APYLDYYCLWSYRVPQDVATFFQVQSHNPALGFARLSKQFPTTGRVLTNSQNSMLTMTQ FT CGYSAVTIASSQGSTYSGATHIHLDRNSSLLSPSNSLVALTRSRTGVFFSGDPALLNGG FT PNSNLMFSAFFQGKSRHIRDWFPTLFPTATLLLSPLRQRHNRLTGALAPVEPSHLLLPD FT LPSLLPLPASGPYSRAFPVRSRFAAAVKPFDRSDVLSWAPIAVGDGETNAPRIDTSFLP FT ETRRPLHFDLPSFRPQAPPPPSDPAPSGTAFEPVYPGETFENLVAHFLPAHDPTDREIH FT WRGQLSNQFPHIDKEYHLAAQPMTLLAPIHDSKHDPTLLAASIQKRLRFRPSASPYRIT FT PRDELLGQLLYESLCRAYHRSPTSTHPFDEALFVECIDLNEFAQLTSKTQAVIMGNARR FT SDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLALMHDAVVLLLGPVKKYQRVFDAR FT DRPAHLYIHAGQTPSSMSLWCQTHLTPAVKLANDYTAFDQSQHGEAVVLERKKMERLSI FT PDHLISLHVYLKTHVETQFGPLTCMRLTGEPGTYDDNTDYNLAVINLEYAAAHVPTMVS FT GDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRVGCVRSPIALFAKLA FT IAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRDLKLA FT LHLGEVPETIIQRLSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSLPEDPAVSSLQGEL FT LHTFHAPMPSPPSLPLFGGLSPDNILTPHEFRTALYESSAYPTPPNSPTSMSGIHASQV FT GPPPASDDRTDRQPSLPLAPRLVESSLAVPYVDVPFQWAVASYAGDSAKFLTDDLSGSS FT HLSRLTIGYRHAELISAELEFAPLAAAFSKPISVTAVWTIASIAPATTTELQYYGGRLL FT TLGGPVLMGSVTRIPADLTRLNPVIKTAVGFTDCPRFTYSVYANSGSANTPLITVMVRG FT VIRLSGPSGNTVTATT" FT CDS 5710..6318 FT /codon_start=1 FT /product="21 kDa capsid protein" FT /note="putative start site; believed to be translated from FT a subgenomic RNA" FT /db_xref="GOA:D3Y4E4" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D3Y4E4" FT /protein_id="ADD13603.1" FT /translation="MSGIHASQVGPPPASDDRTDRQPSLPLAPRLVESSLAVPYVDVPF FT QWAVASYAGDSAKFLTDDLSGSSHLSRLTIGYRHAELISAELEFAPLAAAFSKPISVTA FT VWTIASIAPATTTELQYYGGRLLTLGGPVLMGSVTRIPADLTRLNPVIKTAVGFTDCPR FT FTYSVYANSGSANTPLITVMVRGVIRLSGPSGNTVTATT" XX SQ Sequence 6511 BP; 1068 A; 2779 C; 1285 G; 1379 T; 0 other; gtgtcccagt gtcattgttc cgctcagttt cagatctgcc ggaactctcc aagcatcccg 60 ccccaaaagc cggctgctta aaatctgatc ttctccatct cgtcaagtgt cgctatgacc 120 acatacgcct tccatccgct gctccccacc ccgacttcct tcgccactgt cactgggggt 180 ggtttgaagg atgttatcga aactctctcg tccaccatcc acagagacac aatcgcagca 240 cccctcatgg agaccctcgc ctcgccttat cgagactccc ttcgcgactt cccttgggcc 300 gtccccgcct ccgccttgcc cttcctccag gaatgcggca tcacggtcgc cggccacggt 360 ttcaaagctc atccccaccc tgtccacaaa accattgaga cccacctcct ccacaaggtt 420 tggcctcact atgcccaagt cccctcttcc gtcctcttca tgaagccctc gaagttcgcc 480 aaactccagc ggggcaacgc caacttctct gcactccaca actatcgcct cactgccaaa 540 gacaccccgc gatatcccaa cacttcaacc tctctccccg acaccgagac cgccttcatg 600 catgacgctc tcatgtacta cacccccgct caaattgttg acctgttcct ctcctgcccg 660 aagctcgaga aactgtatgc ctccctcgtc gtcccccctg agtcctcctt cacctccatc 720 tctctccatc cagacctcta ccgctttcgc tttgacgggg accgtctgat ctatgagttg 780 gagggcaacc ccgcccacaa ctatacccaa ccccgatccg ccctcgactg gcttcgcaca 840 accaccatcc gcggaccagg cgtttctctc accgtctcca ggctcgactc gtggggtccc 900 tgccactccc tcctcatcca gcgcggcatc ccccccatgc acgccgagca cgactccatc 960 tcgttcaggg gtccacgcgc tgtcgccatt cccgagccct cctccctcca ccaggatctg 1020 cgccaccgtc tcgtcccaga ggacgtgtac aatgccctat tcctctacgt ccgcgctgtc 1080 cgcacgctcc gcgtaaccga tcccgccggc ttcgtccgca cccagtgctc taagtccgag 1140 tacgcttggg tcacttcctc cgcttgggac aacttggccc acttcgccct ccttaccgcc 1200 ccacaccggc cccgcacctc gttctacctc ttctcctcta ccttccagcg cctcgagcac 1260 tgggtccgcc atcacacctt cctcctcgcc ggcctaacca cagcctttgc tctccctccg 1320 tctgcctggc tcgcgaacct cgtcgcccgc acgtccgctt cacatatcca aggcctcgcg 1380 ctcgcccgcc ggtggctcat cactccccct catctcttcc gccccccttc ccccccaagc 1440 ttcgctcttc ttctccagcg caactccacc ggaccaatcc ttctccgtgg ctcccgcctt 1500 gagttcgagg ccttcccctc tctcgcccca caactcgccc gtcgttttcc attcctcgct 1560 cgccttctcc cccagaaacc aatcaacccc tggattgtcg cgagcctcgc tgtcgccgtc 1620 gccatacccg ccgcttccct cgccgtccgc tggttcttcg gccccgacac cccccaagcc 1680 atgcacgacc gataccacac catgttccac cccagagagt ggcgcctcac cctgcccagg 1740 ggccccatct cctgcggccg ctccagcttc tccccccttc cccacccacc ttcgcccact 1800 cccgcccccg actcccgagc tggacctctc cagccacctt ccgctctacc atcgacccac 1860 gagccggctc ccgccgatct cgagtcccca gcccctcagg cccacgctcc ccagaccgag 1920 cctccgagtc ccgtgatcga gcaagaagcg cgtccggatc ccttccccgc tcctgcccct 1980 cggcctgctc ccaccccctc cgcttccgcg ccttcgcctg ccccaacacc ctcggccccc 2040 gagcccccct cgccgaccgc ttccgagcag gctgcgtccc tgattcccgc tccctcttcc 2100 gcccttgttg tggagccatc cggcgtcgtc tccgcctcat cctggggcgc caccaaccag 2160 ccggccgatc aagtcgatga ctcccctctc gctcgcgatc ccagcgcctc cggccccgtc 2220 cgcttctacc gagacctctt ccccgccaac tacgcgggag actctggcac cttcgacttc 2280 cgcgctcgcg cctcaggccg ctcccccacc ccataccccg ccatggactg cctccttgtc 2340 gccaccgagc aagccactcg tatctctcga gaggccctct gggactgcct tacagccacc 2400 tgccccgact cattcctcga ccccaagagt atcgctcagc acggcctcag caccgatcac 2460 ttcgtcatcc tcgcccatcg cttttcccta tgcgccaatt tccattccgc cgcgcacgtc 2520 attcaactcg ggatggccga tgccacctcc accttcatga tcaaccacac ggccggctcc 2580 gcgggcctcc cgggtcactt ctcgctccgc ctgggtgacc agccccgcgc cctaaacggc 2640 ggcctcgctc aggacctcgc cgtcgccgcc ctccgattca acatctccgg tgatctcctt 2700 ccaacccgat ccgttcatac ttataggtct tggccgaagc gtgccaagaa ccttgtgtcc 2760 aacatgaaga acggtttcga cggagttatg gccagcatta acccgattcg acccagcgat 2820 gcccgtgaga agatcgtcgc ccttgacggt ctcctggaca ttgcccaacc ccgatccgtc 2880 cgcctcatcc acattgccgg cttccctggc tgcgggaaaa cacacccgat caccaagctc 2940 ctacacaccg ccgccttccg tgacttcaaa ctcgccgttc cgaccaccga gctccggtct 3000 gagtggaaag agctcatgaa gctctcaccc tcccaggcct ggcgcttcgg cacctgggag 3060 tcctctcttc tcaagagcgc caggatcctc gtgatcgatg agatctacaa attgcctcga 3120 gggtacctag acctagccat ccactccgac tcgtccatcg agttcgtcat cgccctggga 3180 gatcccctgc aaggcgagta tcactccact catcccagct cctccaactc tcgcctcatc 3240 cccgaagtca gccatctcgc tccctacctc gactactact gcctctggag ttaccgcgtc 3300 ccccaagacg tcgccacttt cttccaggtt cagagccaca accccgctct cgggtttgcc 3360 cgtctctcga agcagtttcc cacgaccggg cgcgtcctca ccaactcgca gaactcgatg 3420 ctcaccatga cacagtgcgg ctactctgcc gtcaccatcg cctcaagcca gggttccacc 3480 tacagcggcg ccacgcacat ccacctcgac cgcaactcat cgctcctctc cccctcgaac 3540 tccctcgtcg ctctcactcg ctcgagaacc ggcgtgttct tttccggcga ccctgccctt 3600 ctcaatggtg gccccaactc caacctcatg ttctctgctt tctttcaggg caagtctcgc 3660 cacattcgtg actggttccc cacccttttc cctacggcca cgctcctcct ttcccccctc 3720 cgccaacgcc acaaccgcct cactggcgcc ctcgctcccg tcgaaccctc ccacctcctg 3780 ctgcctgacc tcccgagcct cctccctctc cccgcctccg gtccctactc ccgtgcattc 3840 ccagttcgat cccgcttcgc tgcggccgtc aagccttttg accggtcaga cgtcctctcg 3900 tgggccccga tcgctgtcgg tgacggggaa accaacgctc ctcgcattga cacctccttt 3960 ctgcccgaaa ctcgccgccc gcttcacttt gatcttcctt cgttccgccc ccaagcccca 4020 ccgcctccct ctgatccagc cccttctggg accgccttcg agcctgttta tcccggcgaa 4080 accttcgaaa atttggtcgc ccacttcctc ccggctcacg accccactga ccgcgaaatt 4140 cactggcgcg ggcagctttc caaccagttc ccccacatcg acaaagagta ccacctcgcg 4200 gctcagccaa tgacgctcct cgctcccatc cacgactcca agcacgaccc caccctcctc 4260 gctgcctcca tccagaaacg acttcgattt cgaccctccg cctctcccta ccgaatcacc 4320 cctcgtgacg agctgctcgg ccagctcctc tacgagagtc tctgtcgcgc gtatcatcgt 4380 tccccaactt ccacccaccc cttcgacgag gccctcttcg tcgagtgcat cgacctgaac 4440 gaattcgctc aactcaccag caaaactcag gccgtcatta tgggcaacgc ccgccgctct 4500 gacccagact ggcgctggtc cgccgtccgg atcttcagca aaacccagca caaggtcaac 4560 gaaggttcga tctttggagc ctggaaagct tgccagaccc ttgctctcat gcacgacgcc 4620 gtcgttctgc tccttggccc cgtcaagaag tatcaacgcg tcttcgatgc tcgagaccgc 4680 cccgcccacc tttacatcca cgccggccag acgccctctt ccatgagcct ttggtgccag 4740 acccacctca ctcccgctgt caagctcgcg aacgactaca ccgctttcga ccagtctcag 4800 catggcgagg ccgtcgtcct cgagagaaag aagatggaac gtctctccat cccggatcac 4860 ctcatctccc tccacgttta ccttaagacc cacgtcgaaa cccagtttgg ccctctcacc 4920 tgtatgcgcc taaccggcga gcccggcacc tacgacgaca atactgacta caacctcgcc 4980 gtcatcaacc tcgagtacgc ggctgcccac gttccgacca tggtctcggg cgacgattca 5040 ctccttgact tcgagccccc acgccgcccg gagtgggtcg ccatcgaacc ccttctagcc 5100 ctccgattca agaaagagcg cggtctgtat gccaccttct gcggctacta cgcctcgcga 5160 gttggctgcg tccgatctcc catcgctctc ttcgccaagc tcgccatcgc cgtcgacgac 5220 tcatccatct ccgacaagct cgccgcatac ctcatggagt tcgcggttgg ccactctctc 5280 ggcgactctc tctggtccgc cctccccctg tccgccgttc ccttccagtc agcctgcttc 5340 gacttcttct gccgccgcgc tccccgcgat ctaaagctcg cccttcacct gggcgaagtc 5400 cctgaaacca tcatccaacg cctctcccac ctctcctggc tgtctcatgc cgtctacagc 5460 ctccttccat cccgccttcg cctcgccatc cttcacagct cacgccagca ccgttccctc 5520 cccgaagacc cagccgtttc ttcgcttcag ggtgaattgc ttcacacgtt ccatgctcca 5580 atgccctctc ccccctcact cccacttttc ggcggtttat ctcccgacaa catcctcact 5640 ccccacgagt tccgcaccgc cctctacgaa agctccgcct accccactcc tcccaactct 5700 ccgacctcca tgtcaggaat ccatgcctcg caagttggtc cgccccccgc cagcgatgat 5760 cgcactgacc gccagccttc tcttcctctt gctcctcgtc ttgtggagag ctctctcgcc 5820 gtgccgtacg tcgacgtccc gttccaatgg gccgtcgcgt cgtacgccgg agactccgcc 5880 aaattcctca ccgacgacct ctcaggatcc tctcacctga gccgcctcac catcggctat 5940 cgccacgccg agctcatctc cgccgagctc gagtttgccc cccttgccgc cgccttctcc 6000 aagcccatct ccgtcaccgc cgtctggacc atagcctcca tcgccccagc caccaccacc 6060 gagctccagt actatggagg ccgactcctc accctcggag gccccgtcct catgggctcc 6120 gttacccgca tcccagccga cctcacccgc ctcaaccccg tcatcaagac cgccgtgggc 6180 ttcactgact gcccccgctt cacctactcc gtctacgcca acagcgggtc cgccaacact 6240 cctctcatca ccgtcatggt gcgaggagtc atccgcctct ccggcccttc gggcaacacc 6300 gtcaccgcca ccacctaagc cctctcaccg gtttcaacag gagtttcttc ctcgttcttc 6360 tcctgacgac caatgaacgt cgcttatctc ccctttacat ttctccgttc cccctccgtt 6420 ttcctctctg ttccattccc cctctccctc cccgtctcag caatgagtaa ggttccaggt 6480 cgattcaaag acctgatggg attttcctcg g 6511 //