ID GU327735; SV 1; linear; genomic RNA; STD; VRL; 5803 BP. XX AC GU327735; XX DT 27-JAN-2010 (Rel. 103, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Sugarcane yellow leaf virus isolate chn1, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5803 RX DOI; 10.1007/s11262-010-0501-8. RX PUBMED; 20563635. RA Wang M.Q., Zhou G.H.; RT "A near-complete genome sequence of a distinct isolate of Sugarcane yellow RT leaf virus from China, representing a sixth new genotype"; RL Virus Genes 41(2):268-272(2010). XX RN [2] RP 1-5803 RA Wang M.Q., Zhou G.H.; RT ; RL Submitted (17-DEC-2009) to the INSDC. RL Plant Pathology, South China Agricultural University, Wushan, Guangzhou, RL Guangdong 510642, China XX DR MD5; 2cf087d2e36ed74f9234402aee9e8a72. DR EuropePMC; PMC4422679; 25946037. XX CC Genome sequence lacks part of non-coding region. XX FH Key Location/Qualifiers FH FT source 1..5803 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar CP93-1309" FT /isolate="chn1" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="leaf" FT /collection_date="Oct-2008" FT /note="genotype: CHN1" FT /db_xref="taxon:94290" FT CDS 1..771 FT /codon_start=1 FT /product="P0 RNA silencing suppressor" FT /note="ORF0" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:D3JXR1" FT /protein_id="ADB82791.1" FT /translation="MLFNEFSVQGIKFRAHASTSPVLREDVSRCLTYYRVFACRWIQLT FT YSDEHTRHLVHNYYGPNTPVYHWLDHIRAVVATMVPILLLPDTTLGQHLHIKGQYLKSV FT LLWLARNKLYYRVTRCFSRRFTLEQEPISAELFRTQLLKYVGMDIFQDVARLQNILERG FT YDPFRSVLGVLLRERERFVDRVLEQPPLDPCQTLRLCFHYHDTLDHDDSDSDMETARHN FT RLFGLPIIRDLPDDEKALFIHSNLVGAGSSASGV" FT CDS join(176..1672,1672..3387) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-directed RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:D3JXR2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D3JXR2" FT /protein_id="ADB82793.1" FT /translation="MDPTRLFTIGWIIFALLLLQWCQYSSCQTQPWDSTSISRDSTSSL FT SFYGWPEINSTIELHGASPGGSLSSKSPSQPNFSELNYSSMLGWIFFKMWLDCKTFSRE FT ATILSDRFLGYSLENAKGLSIEFLNNLLWILVRLYVYAFTIMIRWIMTIVILTWKPLVT FT IAFLVFLSSVTYQMMKKLYSFIQIWWVLAPLLAVFRLIMYLRRRLFSNRGDEKMVAGFK FT SFAVPMTPPGHAVLEIVHPDDSHMGYASCVRLKNGEEALLTSVHCINETFKVRSLRNGV FT KIPLTEFQVLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWK FT MHNAKVTGTDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPP FT VVGLTAPAFVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKPPPPEPPVEKATEKKQTPVSPVEKASVPVEADSGTGKRAEWRRPLKNT FT GIHPAQARRIYKRVAQQHRLAVDPKDRPELHCNEGGGETAAKSTEQTAAERREEVAAQT FT QDLEHFFQAAYKWEETPSDIPGFRKCGKLPALYHPPKPKNSQWGERIISEHPEMATKVA FT GFGWPLFGAQAEETSLRLQAARWLKRAESAEKPTATQRRLVIDRVVKAYEPCKTNAPHT FT SSSGSLLWNDFLKDFKEAINSLELDAGIGLPYKLLNKDTHRQMVEDPKFLPLLTRLTWN FT RLQKMSQVDFREMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLV FT ARVLFQAQNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCPPAEVIRGWKDKI FT VPTDCSGFDWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLY FT AQTHPGVQKSGSYNTSSSNSRVRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFK FT VEVASQLEFCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNE FT LRHDPQLVATLHQWLVPGATTK" FT CDS 176..2128 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:D3JXR3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:D3JXR3" FT /protein_id="ADB82792.1" FT /translation="MDPTRLFTIGWIIFALLLLQWCQYSSCQTQPWDSTSISRDSTSSL FT SFYGWPEINSTIELHGASPGGSLSSKSPSQPNFSELNYSSMLGWIFFKMWLDCKTFSRE FT ATILSDRFLGYSLENAKGLSIEFLNNLLWILVRLYVYAFTIMIRWIMTIVILTWKPLVT FT IAFLVFLSSVTYQMMKKLYSFIQIWWVLAPLLAVFRLIMYLRRRLFSNRGDEKMVAGFK FT SFAVPMTPPGHAVLEIVHPDDSHMGYASCVRLKNGEEALLTSVHCINETFKVRSLRNGV FT KIPLTEFQVLLPAKNIDLVLLRGPPEWKSILGAKAAHFTPANQLNKGAVSIFVHDGEWK FT MHNAKVTGTDGFYATVLSNTEKGFSGAPYWNGKSIVGVHKGYVYGDDSKNYNLMAPIPP FT VVGLTAPAFVYESPSLQGDVFSDADVSDMADYAEEVYEKALAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKPPPPEPPVEKATEKKQTPVSPVEKASVPVERTPAQGNEPSGADHLKTP FT ESTPLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLQKAQNKQQQNGGKKSPRKR FT KTSNTSSKPPTNGKKPPVTSQGSGSAANSQRYTIPQNRKTHNGESASSQSTQRWRPKSP FT DSGGLSSAPKPKRQV" FT CDS 3579..5606 FT /codon_start=1 FT /transl_except=(pos:4167..4169,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; translational readthrough" FT /db_xref="GOA:D3JXR4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D3JXR4" FT /protein_id="ADB82796.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPKXVDDAPPTPTPQPTPPAPAPAPAPKY FT FGYQGVPNNIIKTRGNSEYLDVGQLDSVTMYFWKDESWSIEKLSAGYRVNTRDRAIPYL FT LIPVEKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFICDNVNLQGWRAYAYTGCSISNYK FT TADSNVLGHPDMRVNNCSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV FT SCANFTEKIMEWGSVSIAIDEVNDGAYSGSKWDKTTALRARLRNQVSAPSEVYTPVALE FT SSADEGTGSTPLAPNPALGPDNPATKEPAPKIVDSPDPKVLNWLNNQKDEPVVNEVLRE FT SPIYAPPPPPSLGHTHVDTQRQADKVRRSLMANASRSTSPPPVATEVPVLGSADTASLG FT STLRGGSLRGNLGSRPSLPRVADSPPRPVSPARSETSTLQAGSLSGGSLRGGSLQVLPE FT ATREQRRQYESLKNSQGKTVAKNYAKEQGFKPPKSASFFG" FT CDS 3579..4169 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:B7U4M6" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B7U4M6" FT /protein_id="ADB82794.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRPAAGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTIDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKTFPAPFIRGKDFMTT FT SADQFWLLYKGNGDGSLAGQFVCRFECLFQNPK" FT CDS 3610..4062 FT /codon_start=1 FT /product="putative movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:D3JXR6" FT /protein_id="ADB82795.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISRPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLQASPSRGTPRKPSRPPSSGGKIS" FT 3'UTR 5607..5803 XX SQ Sequence 5803 BP; 1551 A; 1522 C; 1427 G; 1303 T; 0 other; atgcttttta acgaattcag cgttcaaggc atcaagttta gagcacacgc aagcacctcg 60 ccggttttgc gtgaggacgt gagcaggtgt ttaacctatt acagggtttt cgcctgcagg 120 tggatacaac tcacttactc agacgagcac acacgccacc tggtccacaa ttactatgga 180 cccaacacgc ctgtttacca ttggttggat catattcgcg ctgttgttgc tacaatggtg 240 ccaatactcc tcctgccaga cacaaccctg ggacagcacc tccatatcaa gggacagtac 300 ctcaagtctg tccttctatg gttggcccga aataaactct actatagagt tacacggtgc 360 ttctcccgga ggttcactct cgagcaagag cccatctcag ccgaactttt ccgaactcaa 420 ctactcaagt atgttgggat ggatattttt caagatgtgg ctagattgca aaacattctc 480 gagagaggct acgatccttt ccgatcggtt cttggggtac tccttagaga acgcgaaagg 540 tttgtcgatc gagttcttga acaacctcct ctggatcctt gtcagactct acgtctatgc 600 tttcactatc atgatacgtt ggatcatgac gatagtgatt ctgacatgga aaccgctcgt 660 cacaatcgcc tttttggtct tcctatcatc cgtgacttac cagatgatga aaaagcttta 720 ttcattcatt caaatctggt gggtgctggc tcctctgcta gcggtgttta ggttgatcat 780 gtatctaagg cggaggttgt tctcgaatcg tggggacgag aaaatggttg caggcttcaa 840 aagctttgca gtccccatga ctccaccggg acacgctgta cttgagatag tacacccaga 900 cgactctcac atgggatacg catcctgtgt tcgattgaag aatggggaag aggcgttgct 960 gacatctgtt cactgcatta acgaaacctt caaggttcgt tccctcagga atggagtcaa 1020 aatacctcta acggaattcc aagtactctt acccgccaag aatattgact tagttctttt 1080 acgaggccca cctgagtgga agtctattct tggagccaag gcagcccatt tcactccagc 1140 aaatcaactc aacaaagggg cagtgtccat ctttgttcat gatggagagt ggaaaatgca 1200 caatgcaaaa gttactggca ctgatggttt ctacgccaca gtgttgagta acacagagaa 1260 gggcttcagt ggcgccccct actggaacgg caaaagcata gtaggggttc acaaagggta 1320 cgtgtatggg gatgattcaa agaactacaa tctcatggcg cctattcccc ccgttgtggg 1380 gttgacagcg ccagcatttg tctatgaatc cccctctctg caaggagatg tctttagcga 1440 cgccgacgtt tcagacatgg ctgactacgc tgaagaagtg tatgagaaag cccttgcaga 1500 gcccaaagtg tggaagcccg ccagcggcaa atactggtgg gaaatggctg aagaagagga 1560 tgatttcgtt gttgaagcga aacctcctcc ccctgaacct cccgttgaga aagctacgga 1620 aaagaagcag actccagttt ctcctgttga gaaagcttca gttcccgttg agcggactcc 1680 ggcacaggga aacgagccga gtggcgccga ccacttaaaa acaccggaat ccaccccgct 1740 caagcaagac gaatctacaa aagagttgct caacaacatc gtctcgcagt tgatccaaaa 1800 gatcgacctg agctccattg caacgagggt ggaggagaaa ctgctgcaaa aagcacagaa 1860 caaacagcag cagaacggag ggaagaagtc gccgcgcaaa cgcaagacct cgaacacttc 1920 ttccaagccg cctacaaatg ggaagaaacc cccagtgaca tcccagggtt caggaagtgc 1980 ggcaaactcc cagcgctata ccatccccca aaaccgaaaa actcacaatg gggagagcgc 2040 atcatctcag agcacccaga gatggcgacc aaagtcgccg gattcgggtg gcctctcttc 2100 ggcgcccaag ccgaagagac aagtctgagg ctccaagcgg cccgctggct caaacgagcc 2160 gagtcagcgg aaaagccgac tgcaacacaa cgcaggctcg tcattgatcg tgtggtcaag 2220 gcatatgaac cgtgtaaaac caatgcccca cacaccagct cctctggtag cctcctgtgg 2280 aacgacttcc tcaaggattt taaagaggct atcaactcac tagaactcga cgccggaata 2340 ggtctcccat acaaactcct gaacaaggac actcatcgtc aaatggttga agaccccaaa 2400 ttcctgccgc tcctgacgcg attgacctgg aaccgattac agaagatgtc ccaggttgat 2460 ttccgggaga tgactcctga acaactagtg agggaaggat tgtgcgaccc gattcgtttg 2520 ttcgtcaaag gggaaccgca caagcaggcc aagcttgatg aagggcgcta ccgcctcatc 2580 atgtcagtct cgctggtaga tcaactggta gcccgggttt tgttccaagc gcaaaacaag 2640 agagagatag ctttgtggag agctatcccg tcaaagcccg gttttggctt atccacagac 2700 agggaagcac gcgaattcat agaatccctg tccaagacag tagggtgtcc cccagctgaa 2760 gtcattcgtg gctggaagga caagatcgta cccaccgact gttccggttt tgactggtca 2820 gtcgccgact ggatgctcga agacgacatg gaagtgagaa accttctcac tatcaacaac 2880 aacgagctca cccggcgcct tcgggcatgc tggctgaagt gcatcactaa ctcagtgatt 2940 tgcacgtccg gcggtgtctt gtacgcccaa actcaccctg gtgtgcagaa atctggatct 3000 tacaacacga gttcatccaa ttccagggtt cgagtgatgg ccgctttcca ttgcggtgct 3060 gactgggcga tagccatggg ggatgacgca cttgaatccc caaactccaa catcaacgcg 3120 tatcaaaagt tggggttcaa agtcgaggtt gcttcacagc tagaattttg ctcacacgtc 3180 tttgagcagg aagacctcgc caggccgttg aacgtaaaca agatgcttta tcgtttgata 3240 tttggataca atccggcctg tggcaacgcg gaggtattgt gcaattacct ccaagctgtg 3300 gcttcagttc tcaacgaatt acgccacgat ccacagctag ttgccaccct ccaccagtgg 3360 ttggttcctg gcgccaccac aaaataaata cggagggtca tcccgagcca ccaattaggt 3420 tgcaagagtg gaacgggaag tcctaacaag ccgcgagatt ctggattaca agctactagc 3480 tggagtcctc attggcattc tcattgcgat tccactagtg attttagcgg cttacctgat 3540 attcctcaaa atcagtgcac atatccgagc gattgttaat gaatacgggc gctaaccgct 3600 cacgaaggaa tgtcagaaga cgcgctaacc gtcgtcgaca gactcggcca gtggtcgtgg 3660 tccggcctgc cgcaggacct agacgagtac gacgacgtag agcacgtgtt ggaggaaacg 3720 ctgtgcgagg accgggagga agaagcaaca gggatgttct cactttcacg attgacgatc 3780 tcaaggccaa ctcaaccggg atcctcaaat tcggaccgaa cttatctcag tacgcagcgt 3840 tcaacaatgg cttactcaaa gcctaccatg agtataaaat cacaagtctc actattcagt 3900 ataactcatg ctcctccgac gcaactccag gtgcaatcgc acttgaagtg gatacatcct 3960 gctcccaaac aacaacaggc tccaagatta caagcttccc cgtcaagagg aacgccaaga 4020 aaaccttccc ggcccccttc atcaggggga aagatttcat gactacatca gccgatcagt 4080 tctggctttt gtacaaaggg aatggggacg gaagcctagc aggacaattc gtctgccgat 4140 ttgaatgttt attccagaat cccaaatagg tagacgacgc tcccccaaca cccacaccac 4200 aaccaacccc acccgccccg gccccggcac cagcacctaa atattttgga tatcaaggtg 4260 tgccgaacaa catcatcaaa actcgaggta actcagagta tcttgatgtg ggccaactcg 4320 atagcgtgac catgtacttc tggaaagatg aatcatggag catcgagaaa ctgtcagccg 4380 gataccgagt caacactcgc gaccgtgcca taccttatct cctcattcct gtggagaaag 4440 gaaaatactc cgtgttcata caatgtgagg gctttaaggc agtgaaagcc aaaggaggca 4500 cgaatgacgg caaaatgagc gggtttattt gcgacaatgt aaatcttcag ggttggagag 4560 cgtacgcata tactgggtgt tcaatctcta attacaagac agctgactca aatgtcctcg 4620 gtcatccaga catgagagtg aacaactgtt cttttaccga ccagttggtc gagagagatt 4680 tttcttgttc atttcacctc gaggtgcctc aacaaggcta ttttggtcta gaggccccac 4740 ccattgaaaa gagtgatcat ttcaatttcg tggtgtcttg cgctaatttc actgagaaaa 4800 tcatggaatg gggatcagtc tccatagcga tagacgaggt aaatgacgga gcgtatagtg 4860 gatcaaaatg ggataagacc actgctttga gagctcgttt gcgaaatcag gtgagcgccc 4920 catcggaagt gtatactccg gtggcacttg aatcttcggc agacgaaggg acagggagta 4980 cgcccctagc cccgaacccg gcactgggac cggacaaccc agcaaccaaa gagcccgcgc 5040 ccaaaatcgt ggactcgccg gatccaaagg ttctcaattg gcttaacaac caaaaagatg 5100 aaccggtggt taatgaggtt ttgcgagaat ctccgattta cgcgcctcca ccacctccgt 5160 ctctaggtca cactcatgtt gatacacaga gacaggcgga taaggtccgg cgctctctaa 5220 tggctaacgc ttcacgttca acctcacctc ctccagtagc caccgaggtg cccgtgcttg 5280 gatccgccga cactgcctct ttaggtagca ctcttcgcgg tgggtctctc aggggtaatc 5340 tgggctctcg cccctcttta ccgagggtcg ctgacagtcc tccccgacct gtaagtccgg 5400 ctcgttctga gaccagcaca ttacaggccg gttctctgag tggtggttcg ttgagaggtg 5460 gtagtcttca ggttttgcct gaggccacga gagagcagag gaggcagtat gaatctttga 5520 agaattcaca agggaaaacg gtagccaaga actatgccaa agagcaaggt ttcaagccac 5580 cgaaatccgc ctccttcttt ggttgagtgt tggaacacta taaactcccc ctcctcggga 5640 cacagggctc cgtacaagag cttaaaccgc gttcgatcca cgaaccgaaa ctggagaact 5700 ccgcaaagtt ctaaaactat gcagatgggc tagcgaccca gctcttccat tgatgttaag 5760 catctttgga ggcccaagct aaaaggggtg gaatacaggg tgg 5803 //