ID GU327363; SV 1; linear; genomic RNA; STD; VRL; 3362 BP. XX AC GU327363; XX DT 08-FEB-2010 (Rel. 103, Created) DT 08-FEB-2010 (Rel. 103, Last updated, Version 1) XX DE Cucumber mosaic virus strain Rb segment RNA-1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3362 RA Kim M.K., Choi H.S., Kwak H.R., Ko S.J., Lee S.H., Kim J.S., Kim K.H., RA Cha B.J.; RT ; RL Submitted (17-DEC-2009) to the INSDC. RL Agricultural Microbiology Division, National Academy of Agricultural RL Science, Seodun-dong, 150. Kweonseon-Gu, Suwon, GyeongGi-do 441-707, RL Republic of Korea XX DR MD5; 84e89b28c0c0e496c7d33e9f368a2dfe. DR RFAM; RF01084; TLS-PK3. XX CC GenBank Accession Numbers GU327363-GU327365 represent the complete CC genome of Cucumber mosaic virus strain Rb. XX FH Key Location/Qualifiers FH FT source 1..3362 FT /organism="Cucumber mosaic virus" FT /segment="RNA-1" FT /host="Rudbeckia hirta var. pulcherrima" FT /strain="Rb" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2005" FT /note="subgroup: 1" FT /db_xref="taxon:12305" FT gene 96..3077 FT /locus_tag="CMVRbRNA11a" FT CDS 96..3077 FT /codon_start=1 FT /locus_tag="CMVRbRNA11a" FT /product="replicase" FT /note="1a" FT /db_xref="GOA:D3JXL1" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:D3JXL1" FT /protein_id="ADC32108.1" FT /translation="MATSSFSINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GTIPELNCQWRKIRSAFSEAEDVTSLSGKIDSSGFTGVCRFKTLVAFDFINESTMSYVH FT DWKNIKSFLTDQTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASHDLVKWKTVRVLMSTLRETVEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYGMWSASSISKWFAALTR FT PLRVFFSSVVHTLFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLYEKLAQTIDEGSDSPEESSSTPDDTADVCGKEQEISELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNEHGLGPKSDGELFIVNRECVICNSES FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAVCFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAITTVTLVDLDPSRFYITMTQADKASLISRAKEMNLPKDFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT VARA" XX SQ Sequence 3362 BP; 865 A; 726 C; 810 G; 961 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaatta ccctttgaaa 60 accctctctt ttctaatctt ttcttagtaa ttcctatggc gacgtcctcg ttcagcatca 120 atgaattggt agcctcccac ggcgataaag gactactcgc gaccgccctc gttgataaaa 180 cagctcatga gcagctcgag gagcaattac aacatcaacg tagaggccgt aaggtctaca 240 ttcggaatgt tctgagtgta aaggattccg aagtcattcg gaatcggtat ggaggaaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caggacctcg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacacaac gtacactgct 480 gttccccttg tttgggtatc cgcgataaga tgcgccacgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg acagccggat ttttgcactc 600 atccagctgc tgattgcaaa gtacaagccc actttgctat atctattcat ggaggttatg 660 atatgggctt tagaggatta tgtgaggcga tgaacgctca cggaaccact attttgaagg 720 gaacgatgat gttcgatggt gcgatgatgt ttgacgacca aggcacgata cccgaactta 780 attgccagtg gagaaaaatt aggagcgcgt tctctgaagc tgaagacgtc acatctttgt 840 ctggtaaaat tgattcctct ggattcaccg gtgtgtgtag gttcaagact ttggttgctt 900 ttgattttat caatgagtct accatgtcgt acgttcatga ttggaagaat ataaaatcct 960 ttctaacgga ccagacttac tcgtataaag ggatgactta tggcatcgaa cgatgtgtca 1020 ttaatgcggg tatcatgacg tataagataa tcggtgtgcc tgggatgtgt ccgcccgaac 1080 tcattcgaca ttgtatttgg ttcccctcta ttaaagatta tgttggttta aagattcccg 1140 cgtcgcacga cttggttaag tggaaaacag tgcgtgtttt aatgtcaaca ttacgtgaaa 1200 cagtagagat tgctatgagg tgttacaacg ataagaaagc gtggatggaa caattcaagg 1260 ttatcctggg tgttttgtct gcgaaatcat ctaccattgt tattaatggt atgtccatgc 1320 aatctggtga gcgtatagat attaacgatt accattatat tggtttcgct attcttctgc 1380 acacaaaaat gaaatatgaa caactgggaa aaatgtacgg tatgtggagt gcttcgagca 1440 tatcgaagtg gtttgcagcg ttgactcgac cgctgcgtgt gtttttctcc agtgttgttc 1500 acacactgtt cccgactttg agaccccgcg aggaaaaaga attcctgatc aagctctcca 1560 ccttcgtaac ttttaatgaa gagtgctcat ttgacggtgg agaggaatgg gacgtgatat 1620 catctgctgc atacgttgct acgcaggctg ttactgatgg gaaagttttg gctgcgcaga 1680 aagccgagaa gctctatgaa aagctagcac aaaccataga cgaaggatca gacagccctg 1740 aggagtcatc atcaactcct gatgatactg ccgatgtttg tggaaaggag caagaaattt 1800 cggaacttga ctcattgtcg gctcagacac gttcccccat cactagagtt gctgaaaggg 1860 ctactgccat gttggagtac gccgcttatg agaaacagct acacgacacc acagtgtcta 1920 atttgaaacg tatttggaat atggcgggcg gtgatgacaa gagaaactcc ctcgagggta 1980 atttgaagtt tgttttcgac acgtatttca ctgtcgaccc catggtgaat attcactttt 2040 cgacgggtcg gtggatgcgt cctgtgcctg agggaattgt ttactctgtt ggttataatg 2100 aacacggttt aggtccgaag tctgatggag agcttttcat tgtcaataga gaatgcgtga 2160 tatgtaatag cgagtcctta tctgctgtta cgcgttctct ccaagctcca actggaacca 2220 ttagtcaagt cgacggagtc gccggttgtg ggaaaactac ggcaattaaa tccatttttg 2280 agccgtccac tgacatgatc gttaccgcga ataagaagtc cgctcaagat gtgcgtatgg 2340 cacttttcaa atcgtcagac tctaaggaag catgcacctt tgttcgaaca gccgattccg 2400 tcctacttaa tgaatgtccg actgtgagta gggttttggt tgatgaggtc gtattgctac 2460 attttggtca actgtgtgct gtcatgtcta aactgaaagc tgtgcgagct gtatgttttg 2520 gggattcgga gcagattgct ttttcttctc gagatgcttc gtttgacatg cgtttctcta 2580 agattattcc tgatgagact agtgatgcgg acactacatt ccgtagtcca caagatgtcg 2640 tgccacttgt gcgtttaatg gctacgaagg cccttccgaa aggaactcat tcaaaataca 2700 cgaaatgggt ttctcaatct aaagtgaaga gatctgtcac atctcgcgct atcactactg 2760 tgacattggt tgacttggat ccatccaggt tttacattac aatgactcag gctgataagg 2820 cttcactgat ttcaagggcg aaagagatga acttaccaaa ggatttctgg aatgaaagga 2880 ttaaaaccgt acatgaatct caaggtattt ctgaagatca tgtcaccttg gtaagattaa 2940 agagcacaaa atgtgaccta tttaaacagt tttcatactg tcttgttgct ttaactagac 3000 acaaggtcac attccgctac gagtactgcg gtgttttgaa tggtgattta atcgccgaat 3060 gtgtcgctcg tgcttagcgg cttccctcct tcgggcggga tctgagttgg cggtaatcta 3120 caaaccgtct gaagtcacta aacgattgtt tcggtgaacg ggttgtccat ccagcttacg 3180 gctaaaatgg tcagtcgtgg agaaaatcca cgccagcaga cttacaagtc tctgaggcgc 3240 ctttgaaacc atctcctagg tttcttcgga aggacttcgg tccgtgtacc tctagcacaa 3300 tgtgctagtg tcagggtacg ggtgcccccc cacttctgtg gggggcctcc taaaggagac 3360 ca 3362 //