ID GU325632; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC GU325632; XX DT 05-FEB-2010 (Rel. 103, Created) DT 05-MAY-2011 (Rel. 108, Last updated, Version 3) XX DE Tomato yellow leaf curl virus isolate Nons, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RX DOI; 10.1007/s11262-010-0541-0. RX PUBMED; 20963475. RA Kim S.H., Oh S., Oh T.K., Park J.S., Kim S.C., Kim S.H., Kim Y.S., RA Hong J.K., Sim S.Y., Park K.S., Lee H.G., Kim K.J., Choi C.W.; RT "Genetic diversity of tomato-infecting Tomato yellow leaf curl virus RT (TYLCV) isolates in Korea"; RL Virus Genes 42(1):117-127(2011). XX RN [2] RP 1-2781 RA Kim S., Oh T.-K., Oh S., Kim J., Jang K., Choi C., Kim Y., Kim S.; RT ; RL Submitted (16-DEC-2009) to the INSDC. RL Department of Biology & Medicinal Science, Pai Chai University, 439-6 Doma RL 2-dong, Seo-gu, Daejeon 302-735, South Korea XX DR MD5; 030e5199a8c9a6c9cc4ecfeac16ed223. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /lab_host="Lycopersicon esculentum" FT /isolate="Nons" FT /mol_type="genomic DNA" FT /country="South Korea:Jeju Island" FT /collection_date="14-Sep-2009" FT /PCR_primers="fwd_seq: atgtgggcctagagacctg, rev_seq: FT gaattcttaatttkrtaytgaatcatagaa" FT /PCR_primers="fwd_seq: gaattcatgtcgaagcgwcca, rev_seq: FT gaggatgcaatttgattggttgac" FT /PCR_primers="fwd_seq: gcatgcctcgaatccagtgtatgc, rev_seq: FT gcatgcgtacatgccatatacagtaac" FT /db_xref="taxon:10832" FT gene 314..664 FT /gene="V2" FT CDS 314..664 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:A6H4Y2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A6H4Y2" FT /protein_id="ADB97295.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT gene 474..1250 FT /gene="V1" FT CDS 474..1250 FT /codon_start=1 FT /gene="V1" FT /product="V1" FT /note="coat protein" FT /db_xref="GOA:D3JXB0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D3JXB0" FT /protein_id="ADB97296.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSIPN" FT gene complement(1247..1651) FT /gene="C3" FT CDS complement(1247..1651) FT /codon_start=1 FT /gene="C3" FT /product="C3" FT /db_xref="GOA:D3JXB1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3JXB1" FT /protein_id="ADB97297.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQILKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1392..1799) FT /gene="C2" FT CDS complement(1392..1799) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:A5A3G5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5A3G5" FT /protein_id="ADB97298.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1708..2781) FT /gene="C1" FT CDS complement(1708..2781) FT /codon_start=1 FT /gene="C1" FT /product="C1" FT /note="replication-associated protein" FT /db_xref="GOA:D3JXB3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3JXB3" FT /protein_id="ADB97299.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLTNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFT FT SINQGPTQDSQEETHKA" FT gene complement(2337..2630) FT /gene="C4" FT CDS complement(2337..2630) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3JXB4" FT /protein_id="ADB97300.1" FT /translation="MGNHIYMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWKKTETSLILEFSKSMADQLEEVSNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 760 A; 528 C; 610 G; 883 T; 0 other; gttgaaatga attggtgtcc ctcaaagctc tatggcaatc ggtgtatcgg tgtcttactt 60 atacctggac acctaatggc tatttggtaa ttttgtaaaa gtacaattca attcaaaatt 120 caaaattcaa aaatcaaatc attaaagcgg ccatccgtat aatattaccg gatggccgcg 180 ccttttattt ttatgtggtc cccatgaggg ttccacagac gtcactgtca accaatcaaa 240 ttgcatcctc aaacgttaga taagtattta tttgtcttta tatacttggt ccccaagtaa 300 tttgtcttgc actatgtggg atccacttct aaatgaattt cctgaatctg ttcacggatt 360 tcgttgtatg ttagctatta aatatttgca ggccgttgag gaaacttacg agcccaatac 420 attgggccac gatttaatta gggatcttat atctgttgta agggcccgtg actatgtcga 480 agcgaccagg cgatataatc atttccacgc ccgtctcgaa ggttcgccga aggctgaact 540 tcgacagccc atacagcagc cgtgctgctg tccccattgt ccaaggcaca aacaagcgac 600 gatcatggac gtacaggccc atgtaccgga agcccagaat atacagaatg tatcgaagcc 660 ctgatgttcc tcgtggatgt gaaggcccat gtaaagtcca gtcttatgag caacgggatg 720 atattaagca tactggtatt gttcgttgtg ttagtgatgt tactcgtgga tctggaatta 780 cccacagagt gggtaagagg ttctgtgtta aatcgatata ttttttaggt aaagtctgga 840 tggatgaaaa tattaagaag cagaatcaca ctaatcaggt catgttcttc ttggttcgtg 900 atagaaggcc ctatggaaac agcccaatgg attttggaca ggtttttaat atgttcgata 960 atgagcccag taccgcaacc gtgaagaatg atttgcggga taggtttcaa gtgatgagga 1020 aatttcatgc tacagttatt ggtgggccct ctggaatgaa ggaacaggca ttagttaaga 1080 gattttttag aattaacagt cacgtaactt ataatcatca ggaggcagcc aagtatgaga 1140 accatactga aaacgccttg ttattgtata tggcatgtac gcatgcctct aatccagtgt 1200 atgcaactat gaaaatacgc atctatttct atgattcaat accaaattaa taaaatttat 1260 attttatatc atgagtttct gttacattta ttgtgttttc aagtacatca tacaatacat 1320 gatcaactgc tctgattaca ttattaattg aaattacacc aagactatct aaatacttaa 1380 gaatttgata tctaaatact cttaagaaac gaccagtctg aggctgtaat gtcgtccaaa 1440 ttcggaagtt gagaaaacat ttgtgaatcc ccaatacctt cctgatgttg tggttgaatc 1500 ttatctgaat ggaaatgatg tcgtggttca ttagaaatgg cctctggctg tgttctgtta 1560 tcttgaaata gaggggattg tttatctccc agataaaaac gccattctct gcttgaggag 1620 cagtgatgag ttcccctgtg cgtgaatcca tgattgttgc agttgatgtg gaggtagtat 1680 gagcagccac agtctaggtc tacacgctta cgccttatgg gtttcttctt ggctatcttg 1740 tgttggacct tgattgatac ttgtgaacag tggctcgtag agggtgacga aggttgcatt 1800 cttgagagcc caatttttca aggatatgtt tttttcttcg tctagatatt ccctatatga 1860 ggaggtaggt cctggattgc agaggaagat agtgggaatt ccccctttaa tttgaatggg 1920 cttcccgtac tttgtgttgc tttgccagtc cctctgggcc cccatgaatt ccttgaagtg 1980 ctttaaataa tgcgggtcta cgtcatcaat gacgttgtac cacgcatcat tactgtacac 2040 ctttgggctt aggtctagat gtccacataa ataattatgt gggcctagag acctggccca 2100 cattgttttg cctgttctgc tatcaccctc aatgacaata cttatgggtc tccatggccg 2160 cgcagcggaa gatacgacgt tctcggcgac ccactcttca agttcatctg gaacttgatt 2220 aaaagaagaa gaaagaaatg gagaaacata aacttctaaa ggaggactaa aaatcctatc 2280 taaatttgaa cttaaattat gaaattgtaa aatatagtcc tttggggcct tctcttttaa 2340 tatattgagg gcctcggatt tactgcctga attgagtgcc tcggcatatg cgtcgttggc 2400 agattgctga cctcctctag ctgatctgcc atcgatttgg aaaactccaa aatcaatgaa 2460 gtctccgtct ttttccacgt aggtcttgac atctgttgag ctcttagctg cctgaatgtt 2520 cggatggaaa tgtgctgacc tgtttgggga taccaggtcg aagaaccgtt ggttcttaca 2580 ttggtatttg ccttcgaatt ggataagcac atgtagatgt ggttccccat tctcgtggag 2640 ttctctgcaa actttgatgt attttttatt tgttggggtt tctaggtttg ttaattggga 2700 aagggcttcc tctttagaga gagaacaatt gggatatgtt aggaaataat ttttggcata 2760 tattttaaat aaacgaggca t 2781 //