Dbfetch

Dbfetch

ID   GU324108; SV 1; linear; genomic RNA; STD; VRL; 1367 BP.
XX
AC   GU324108;
XX
DT   08-SEP-2010 (Rel. 106, Created)
DT   08-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Suakwa aphid-borne yellows virus isolate SABYV-TW51 RdRp protein (RdRp),
DE   coat protein (CP), and MP protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Suakwa aphid-borne yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1367
RX   DOI; 10.1111/j.1365-3059.2010.02327.x.
RX   AGRICOLA; IND44419733.
RA   Knierim D., Deng T.C., Tsai W.S., Green S.K., Kenyon L.;
RT   "Molecular identification of three distinct Polerovirus species and a
RT   recombinant Cucurbit aphid-borne yellows virus strain infecting cucurbit
RT   crops in Taiwan";
RL   Plant Pathol. 59(5):991-1002(2010).
XX
RN   [2]
RP   1-1367
RA   Knierim D., Deng T.C., Tsai W.S., Green S., Kenyon L.;
RT   ;
RL   Submitted (15-DEC-2009) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; 86c66a7ebe7fccc7d3cb2a65e697297d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1367
FT                   /organism="Suakwa aphid-borne yellows virus"
FT                   /host="Cucurbita moschata (cushaw)"
FT                   /isolate="SABYV-TW51"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan:Tainan County"
FT                   /collection_date="27-Feb-2009"
FT                   /db_xref="taxon:646010"
FT   gene            <1..579
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..579
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /db_xref="GOA:E0XKP7"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKP7"
FT                   /protein_id="ADM67507.1"
FT                   /translation="SVSSWMLEDDMEVRNNLTINNNELTRRLRACWLKCISNSVICLSD
FT                   GTLLAQEFPGIQKSGSYNTSSTNSRVRVMLSIYAGASWAIAMGDDALESADTIIPLYEQ
FT                   YGLKVEVSDKLEFCSHEFKSSSLAVPINIGKMLYKLIHGYEIFPGMSSIQVTINYLTAC
FT                   YALLNELRHVPEAASLVAQCLAPVEAQKV"
FT   gene            779..>1367
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             779..>1367
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:E0XKP8"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKP8"
FT                   /protein_id="ADM67508.1"
FT                   /translation="MNTVVVRNRNGMGRRRRNSRRNAKGNRVVVVQAPGAPQRGRRRRR
FT                   NGRRPSRGGRARGTSQGETFVFSKDNLTGSSSGAITFGPSLSDSPAFSSGILKAYHEYK
FT                   ISMVKLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKSGSRTWSAKFINGME
FT                   WHDASEDQFRILYKGNGSSSTAGSFRITIRCQV"
FT   gene            807..>1367
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             807..>1367
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="MP protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKP9"
FT                   /protein_id="ADM67509.1"
FT                   /translation="MAWEEGEGIAGAMQKATAWLWSKPLGLHSAEDDDDETVDALLEEA
FT                   ELEEQAKAKHSYSAKTISRAVPLEQSRSGRLYQTAQHSALEYSRPTMSIKSQWLSWSSS
FT                   PRPLPRPPVPSLMSWTPIANLAPSNPRLINSVSQRVDHEHGALSSLTGWNGTTPQRISS
FT                   ESFTKETEVPQRRALLESPSGVKS"
XX
SQ   Sequence 1367 BP; 384 A; 338 C; 320 G; 325 T; 0 other;
     agtgtctcat cgtggatgct cgaggatgac atggaggtta ggaacaacct caccatcaat        60
     aacaacgagc tcaccaggcg tcttcgcgca tgctggttga agtgcatatc gaactctgtg       120
     atatgcctgt ccgatgggac tttgctagct caggagttcc ccggcataca gaagtcgggc       180
     tcctacaaca ccagctctac caactcaaga gtgagggtaa tgctctcaat ttacgctggt       240
     gcatcctggg ccatagcaat gggcgatgac gcccttgagt ccgctgatac gataatccca       300
     ttatatgagc aatatggact caaagtcgag gtctctgaca aactggaatt ttgttctcat       360
     gagttcaaaa gttcaagcct cgccgtcccc ataaatatag ggaaaatgct ttataagctc       420
     atacatggat atgaaatctt cccggggatg tccagcattc aggtcaccat caattatttg       480
     actgcctgtt acgcgcttct aaacgagctg cgtcatgtac ctgaagctgc ttcacttgtt       540
     gcgcagtgcc tcgctccagt cgaggcacaa aaagtttaaa taaaagcgca cacacagaac       600
     tagccggaaa tacgttgttg caattgccgg aagttaaaag tcaactacaa cataggccaa       660
     ccagatttca aatttttagc aggatttact tcgggcttcc tgatagctgt accaatttca       720
     gcacttggcc tatatttgat ctacctaaag atttctaaac acgtgcaatc aatagttaat       780
     gaatacggtc gtggttagaa atcgaaatgg catgggaaga aggagaagga atagccggcg       840
     caatgcaaaa ggcaaccgcg tggttgtggt ccaagcccct ggggctccac agcgcggaag       900
     acgacgacga cgaaacggtc gacgcccttc tcgaggaggc agagctagag gaacaagcca       960
     aggcgaaaca ttcgtattca gcaaagacaa tctcacgggc agttcctctg gagcaatcac      1020
     gttcgggccg tctttatcag acagcccagc attcagctct ggaatactca aggcctacca      1080
     tgagtataaa atctcaatgg ttaagttgga gttcatctcc gaggcctctt ccacgtcctc      1140
     cggttccatc tcttatgagt tggaccccca ttgcaaactt agctccctcc aatccacggt      1200
     taataaattc ggtatcacaa agagtggatc acgaacatgg agcgctaagt tcattaacgg      1260
     gatggaatgg cacgacgcct cagaggatca gttccgaatc ctttacaaag gaaacggaag      1320
     ttcctcaacg gcgggctctt ttagaatcac catcaggtgt caagtcc                    1367
//