ID   GU324099; SV 1; linear; genomic RNA; STD; VRL; 1361 BP.
XX
AC   GU324099;
XX
DT   08-SEP-2010 (Rel. 106, Created)
DT   08-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Cucurbit aphid-borne yellows virus isolate CABYV-R-TW36 RdRp protein
DE   (RdRp), coat protein (CP), and MP protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Cucurbit aphid-borne yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1361
RX   DOI; 10.1111/j.1365-3059.2010.02327.x.
RX   AGRICOLA; IND44419733.
RA   Knierim D., Deng T.C., Tsai W.S., Green S.K., Kenyon L.;
RT   "Molecular identification of three distinct Polerovirus species and a
RT   recombinant Cucurbit aphid-borne yellows virus strain infecting cucurbit
RT   crops in Taiwan";
RL   Plant Pathol. 59(5):991-1002(2010).
XX
RN   [2]
RP   1-1361
RA   Knierim D., Deng T.C., Tsai W.S., Green S., Kenyon L.;
RT   ;
RL   Submitted (15-DEC-2009) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; c3a52944e6190b4d6d32297aa592463a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1361
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="Cucurbita pepo (squash)"
FT                   /isolate="CABYV-R-TW36"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan:Tainan County"
FT                   /collection_date="21-Jan-2009"
FT                   /db_xref="taxon:91753"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /db_xref="GOA:E0XKM0"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKM0"
FT                   /protein_id="ADM67480.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDINETTKRLRSAWLKCISNSVLSLSD
FT                   GTLLSQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAMAMGDDALESVSSNLAKYAE
FT                   LGFKVEVSSKLEFCSHIFKREDLAIPINKAKMIYKLIHGYEPECGNAEVLINYLAACFS
FT                   VLNELRSDPQLVATLHQWLVLPVQPQKI"
FT   gene            776..>1361
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             776..>1361
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:E0XKM1"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKM1"
FT                   /protein_id="ADM67481.1"
FT                   /translation="MNTAVARNQNAGRRRRRNQRSSRRNRVVVVNPIGGPPRGRRQRRN
FT                   RRRVNRGGRARGGSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI
FT                   NMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKNGLRRWTARQINGVEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
FT   gene            804..>1361
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             804..>1361
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="MP protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKM2"
FT                   /protein_id="ADM67482.1"
FT                   /translation="MQGGAGDEISALHGATAWLWSTRLGDHRAEDDNDETADALIEEAE
FT                   LEEEAQAKHSYFQRTISRAVPQEVSPSGRLFQRAQHSALEYSRPTMNIRSTWSSWSSSP
FT                   RPLPPPRVPSLMSWTPTASLAPSNPRLISLESPRMDCEDGQLGRSTGWNGTTQPRINSR
FT                   SSTKGTDLPRLREASGSPSSARS"
XX
SQ   Sequence 1361 BP; 368 A; 333 C; 337 G; 323 T; 0 other;
     agcgtttcgg actggctctt ggaagatgat atggaagtcc gaaaccgcct gacgcttgat        60
     atcaacgaga ccaccaagcg cttgagatct gcttggttaa aatgcatctc gaatagcgtc       120
     ctcagcctct ccgatgggac tctgttgtca caacgagtcc ccggagtaca gaaatctggc       180
     agctataata cctcatcctc taactctagg attcgagtga tggctgcata tcattgcggg       240
     gctgagtggg cgatggcaat gggcgatgac gctcttgagt cagtcagctc gaacctagcg       300
     aaatacgctg agctaggttt caaagtcgag gtttcctcaa aactggaatt ttgttcacac       360
     atttttaaac gtgaggacct cgccattccg attaacaaag ccaagatgat atataaactg       420
     atacatggct atgaaccgga atgtggcaac gctgaggttt tgatcaacta tctggctgcc       480
     tgtttttcag ttcttaatga attgcggtca gatcctcagc tcgttgcaac tctccatcag       540
     tggctggttc ttccagtgca gccacaaaag atataagggg agtataaaga acactagcca       600
     ggcacacacg agttgcaagc actggaggtt taagtctcgt taccaagagt ccaaacaata       660
     gattataaat ttctcgcagg attttctagc ggtctattgt ctgcaatacc tattacggta       720
     atcggactct attttgtcta cctaaagatt tcagcacacg tgcgagcaat tgttaatgaa       780
     tacggccgtg gctagaaatc aaaatgcagg gaggcgcagg cgacgaaatc agcgctcttc       840
     acggcgcaac cgcgtggttg tggtcaaccc gattggggga ccaccgcgcg gaagacgaca       900
     acgacgaaac cgccgacgcg ttaatcgagg aggcagagct agaggaggaa gcccaggcga       960
     aacattcgta ttttcaaagg acaatctcac gggcagttcc tcaggaagta tcaccttcgg      1020
     gccgtctctt tcagagagcc cagcattcag ctctggaata ctcaaggcct accatgaata      1080
     taagatcaac atggtccagt tggagttcat ctccgaggcc tcttccacct cctcgggttc      1140
     catctcttat gagttggacc cccactgcaa gcttagctcc ctccaatcca cggttaataa      1200
     gtttggaatc accaagaatg gattgcgaag atggacagct aggcagatca acggggtgga      1260
     atggcacgac gcaaccgagg atcaattcaa gatcctctac aaagggaacg gatcttcctc      1320
     ggttgcggga agcttcagga tcaccatcaa gtgccaggtc c                          1361
//