ID   GU324098; SV 1; linear; genomic RNA; STD; VRL; 1361 BP.
XX
AC   GU324098;
XX
DT   08-SEP-2010 (Rel. 106, Created)
DT   08-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Cucurbit aphid-borne yellows virus isolate CABYV-C-TW36 RdRp protein
DE   (RdRp), coat protein (CP), and MP protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Cucurbit aphid-borne yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1361
RX   DOI; 10.1111/j.1365-3059.2010.02327.x.
RX   AGRICOLA; IND44419733.
RA   Knierim D., Deng T.C., Tsai W.S., Green S.K., Kenyon L.;
RT   "Molecular identification of three distinct Polerovirus species and a
RT   recombinant Cucurbit aphid-borne yellows virus strain infecting cucurbit
RT   crops in Taiwan";
RL   Plant Pathol. 59(5):991-1002(2010).
XX
RN   [2]
RP   1-1361
RA   Knierim D., Deng T.C., Tsai W.S., Green S., Kenyon L.;
RT   ;
RL   Submitted (15-DEC-2009) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; f5717c9310fe788a605fdc9157082aa3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1361
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="Cucurbita pepo (squash)"
FT                   /isolate="CABYV-C-TW36"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan:Tainan County"
FT                   /collection_date="21-Jan-2009"
FT                   /db_xref="taxon:91753"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /db_xref="GOA:E0XKL7"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKL7"
FT                   /protein_id="ADM67477.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDLNETTRRLRAAWLHCISNSVLCLSD
FT                   GTLLAQRIPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAIAMGDDALESACSNLEHYKS
FT                   LGFKVEESSKLEFCSHIFEKEDLAIPVNKAKMLYKLIHGYEPECGNVEVLMNYLAACFS
FT                   ILNELRSDPSLVETLHRWLVLPVQPQKI"
FT   gene            776..>1361
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             776..>1361
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:E0XKL8"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKL8"
FT                   /protein_id="ADM67478.1"
FT                   /translation="MNTAVARNQNAGRRRRRNQRSSRRNRVVVVNPIGGPPRGRRQRRN
FT                   RRRANRGGRARGGSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI
FT                   NMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKNGLRRWTARQINGVEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
FT   gene            804..>1361
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             804..>1361
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="MP protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKL9"
FT                   /protein_id="ADM67479.1"
FT                   /translation="MQGGAGDEISALHGATAWLWSTRLGDHRAEDDNDETADALIEEAE
FT                   LEEEAQAKHSYFQRTISRAVPQEVSPSGRLFQRAQHSALEYSRPTMNIRSTWSSWSSSP
FT                   RPLPPPRVPSLMSWTPTASLAPSNPRLISLESPRMDCEDGQLGRSTGWNGTTQPRINSR
FT                   SSTKGTDLPRLREASGSPSSARS"
XX
SQ   Sequence 1361 BP; 359 A; 340 C; 346 G; 316 T; 0 other;
     agcgtttcgg actggcttct tgaagatgat atggaggtcc gaaaccgcct gacgctagat        60
     ctcaatgaga cgacccgccg cttgcgagcg gcttggttgc actgtatctc taatagcgtc       120
     ctctgcctat ctgacggaac attattagcg cagagaatcc caggcgtgca gaagagtggc       180
     agctataata cgtcatcgag taattcccga atccgggtga tggctgccta ccactgcggc       240
     gccgaatggg ctatagcgat gggcgatgac gccctcgagt cagcttgctc gaacctcgag       300
     cattataaat cgctcggttt taaagtcgag gagtcctcaa aactggaatt ctgttctcac       360
     atttttgaga aggaggacct cgccattccg gtcaataagg ccaaaatgct gtacaagctt       420
     atacatggct atgaaccgga atgcggcaat gtggaagtgt tgatgaatta tttggccgct       480
     tgcttttcaa tccttaatga attgcggtct gatccttccc ttgtcgaaac tctccatcgg       540
     tggctggtgc ttccagtaca gccacaaaag atataagggg agtataaaga acaccagcca       600
     ggcacacacg agttgcaagc actggaagtt taagtctcgt taccaagagt ccaaacaata       660
     gattataaat ttctcgcagg gttttctagc ggtctattgt ctgcaatacc tattacggta       720
     atcggactct attttgtcta cctaaagatt tcagcacacg tgcgagcaat tgttaatgaa       780
     tacggccgtg gctagaaatc aaaatgcagg gaggcgcagg cgacgaaatc agcgctcttc       840
     acggcgcaac cgcgtggttg tggtcaaccc gattggggga ccaccgcgcg gaagacgaca       900
     acgacgaaac cgccgacgcg ctaatcgagg aggcagagct agaggaggaa gcccaggcga       960
     aacattcgta ttttcaaagg acaatctcac gggcagttcc tcaggaagta tcaccttcgg      1020
     gccgtctctt tcagagagcc cagcattcag ctctggaata ctcaaggcct accatgaata      1080
     taagatcaac atggtccagt tggagttcat ctccgaggcc tcttccacct cctcgggttc      1140
     catctcttat gagttggacc cccactgcaa gcttagctcc ctccaatcca cggttaataa      1200
     gtttggaatc accaagaatg gattgcgaag atggacagct aggcagatca acggggtgga      1260
     atggcacgac gcaaccgagg atcaattcaa gatcctctac aaagggaacg gatcttcctc      1320
     ggttgcggga agcttcagga tcaccatcaa gtgccaggtc c                          1361
//