ID   GU324097; SV 1; linear; genomic RNA; STD; VRL; 1360 BP.
XX
AC   GU324097;
XX
DT   08-SEP-2010 (Rel. 106, Created)
DT   08-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Cucurbit aphid-borne yellows virus isolate CABYV-R-TW27 RdRp protein
DE   (RdRp), coat protein (CP), and MP protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Cucurbit aphid-borne yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1360
RX   DOI; 10.1111/j.1365-3059.2010.02327.x.
RX   AGRICOLA; IND44419733.
RA   Knierim D., Deng T.C., Tsai W.S., Green S.K., Kenyon L.;
RT   "Molecular identification of three distinct Polerovirus species and a
RT   recombinant Cucurbit aphid-borne yellows virus strain infecting cucurbit
RT   crops in Taiwan";
RL   Plant Pathol. 59(5):991-1002(2010).
XX
RN   [2]
RP   1-1360
RA   Knierim D., Deng T.C., Tsai W.S., Green S., Kenyon L.;
RT   ;
RL   Submitted (15-DEC-2009) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; bc221727d6e73426623d0ec8e4e5759f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1360
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="Cucurbita pepo (squash)"
FT                   /isolate="CABYV-R-TW27"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan:Changhua County"
FT                   /collection_date="18-Nov-2008"
FT                   /db_xref="taxon:91753"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /db_xref="GOA:E0XKL4"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKL4"
FT                   /protein_id="ADM67474.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDINETTKRLRSAWLKCISNSVLSLSD
FT                   GTLLSQQVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAMAMGDDALESVSSNLAKYAE
FT                   LGFKVEVSSKLEFCSHIFKREDLAIPINKAKMIYKLIHGYEPECGNAEVLINYLAACFS
FT                   VLNELRSDPQLVATLHQWLVLPVQPQKI"
FT   gene            775..>1360
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             775..>1360
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:E0XKL5"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKL5"
FT                   /protein_id="ADM67475.1"
FT                   /translation="MNTAVARNQNAGRRRRRNQRSSRRNRVVVVNPIGGPPRGRRQRRN
FT                   RRRANRGGRARGGSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI
FT                   NMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKNGLRRWTARQINGVEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
FT   gene            803..>1360
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             803..>1360
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="MP protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKL6"
FT                   /protein_id="ADM67476.1"
FT                   /translation="MQGGAGDEISALHGATAWLWSTRLGDHRAEDDNDETADALIEEAE
FT                   LEEEAQAKHSYFQRTISRAVPQEVSPSGRLFQRAQHSALEYSRPTMNIRSTWSSWSSSP
FT                   RPLPPPRVPSLMSWTPTASLAPSNPRLISLESPRMDCEDGQLGRSTGWNGTMQPRINSR
FT                   SSTKGTDLPRLREASGSPSSARS"
XX
SQ   Sequence 1360 BP; 371 A; 334 C; 334 G; 321 T; 0 other;
     agtgtttcgg actggctctt ggaagatgat atggaagtcc gaaaccgcct gacgcttgat        60
     atcaacgaga ccaccaagcg cttgagatct gcttggttaa aatgcatctc gaatagcgtc       120
     ctcagcctct ccgatgggac tctgttgtca caacaagtcc ccggagtaca gaaatctggc       180
     agctacaata cctcatcctc taactctagg attcgagtga tggctgcata tcattgcggg       240
     gctgagtggg cgatggcaat gggcgatgat gcccttgagt cagtcagctc gaacctagcg       300
     aaatacgctg agctaggttt caaagtcgag gtttcctcaa aactggaatt ttgttcacac       360
     atttttaaac gtgaggacct cgccattccg attaacaaag ccaagatgat atataaactg       420
     atacatggct atgaaccgga atgtggtaac gctgaggttt tgatcaacta tctggccgcc       480
     tgtttttcag ttctcaatga actgcggtca gatcctcagc tcgttgcaac tctccatcag       540
     tggctggttc ttccagtgca gccacaaaag atataagggg agtataaaga acactagcca       600
     agcatacacg agttgcaagc gttggaagtc tagtctcgtt acaaagagtc caaacaatag       660
     attataaatt tctcgcagga ttttctagcg gtctattgtc tgcaatacct atcacagtaa       720
     tcggactcta ttttgtctac ctaaagattt cagcacacgt gcgagcaatt gttaatgaat       780
     acggccgtgg ctagaaatca aaatgcaggg aggcgcaggc gacgaaatca gcgctcttca       840
     cggcgcaacc gcgtggttgt ggtcaacccg attgggggac caccgcgcgg aagacgacaa       900
     cgacgaaacc gccgacgcgc taatcgagga ggcagagcta gaggaggaag cccaggcgaa       960
     acattcgtat tttcaaagga caatctcacg ggcagttcct caggaagtat caccttcggg      1020
     ccgtctcttt cagagagccc agcattcagc tctggaatac tcaaggccta ccatgaatat      1080
     aagatcaaca tggtccagtt ggagttcatc tccgaggcct cttccacctc ctcgggttcc      1140
     atctcttatg agttggaccc ccactgcaag cttagctccc tccaatccac ggttaataag      1200
     tttggaatca ccaagaatgg attgcgaaga tggacagcta ggcagatcaa cggggtggaa      1260
     tggcacgatg caaccgagga tcaattcaag atcctctaca aagggaacgg atcttcctcg      1320
     gttgcgggaa gcttcaggat caccatcaag tgccaggtcc                            1360
//