ID   GU324095; SV 1; linear; genomic RNA; STD; VRL; 1361 BP.
XX
AC   GU324095;
XX
DT   08-SEP-2010 (Rel. 106, Created)
DT   08-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Cucurbit aphid-borne yellows virus isolate CABYV-C-TW20 RdRp protein
DE   (RdRp), coat protein (CP), and MP protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Cucurbit aphid-borne yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1361
RX   DOI; 10.1111/j.1365-3059.2010.02327.x.
RX   AGRICOLA; IND44419733.
RA   Knierim D., Deng T.C., Tsai W.S., Green S.K., Kenyon L.;
RT   "Molecular identification of three distinct Polerovirus species and a
RT   recombinant Cucurbit aphid-borne yellows virus strain infecting cucurbit
RT   crops in Taiwan";
RL   Plant Pathol. 59(5):991-1002(2010).
XX
RN   [2]
RP   1-1361
RA   Knierim D., Deng T.C., Tsai W.S., Green S., Kenyon L.;
RT   ;
RL   Submitted (15-DEC-2009) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; f0215e2fa0c4decd6c18e1eaa82d24ba.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1361
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="Momordica charantia (bittermelon)"
FT                   /isolate="CABYV-C-TW20"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan:Kaohsiung County"
FT                   /collection_date="08-Nov-2008"
FT                   /db_xref="taxon:91753"
FT   gene            <1..576
FT                   /gene="RdRp"
FT                   /note="ORF2"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /db_xref="GOA:E0XKK8"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKK8"
FT                   /protein_id="ADM67468.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDLNETTRRLRAAWLKCISNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAMAMGDDALESACSNLERYKS
FT                   LGFKVEESSKLEFCSHIFEKEDLAIPVNKAKMLYKLIHGYEPECGNVEVLVNYLAACFS
FT                   ILNELRSDPSLVETLHRWLVLPVQPQKI"
FT   gene            776..>1361
FT                   /gene="CP"
FT                   /note="ORF3"
FT   CDS             776..>1361
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:E0XKK9"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKK9"
FT                   /protein_id="ADM67469.1"
FT                   /translation="MNTAVARNQNAGRRRRRNQRPARRDRVVVVNPIGGPPRGRRQRRN
FT                   RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI
FT                   SMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTARQINGMEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
FT   gene            804..>1361
FT                   /gene="MP"
FT                   /note="ORF4"
FT   CDS             804..>1361
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="MP protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:E0XKL0"
FT                   /protein_id="ADM67470.1"
FT                   /translation="MQGGGGEEINALQGVTAWLWSTPLGGHHAEDDNEETADALIEEAE
FT                   LEDEARAKHLYFQRTISRAVPQEVSLSGRLYQRAQHSALEYSRPTMNIKSAWSSWSSSP
FT                   RPLPPPQVPSLMSWTPTASLAPSNPRLISLESPRMDCEDGQLGRLTGWNGTTQPRTNLR
FT                   SSTKGMDLPRLRAASESPSSARS"
XX
SQ   Sequence 1361 BP; 370 A; 336 C; 341 G; 314 T; 0 other;
     agcgtttcgg actggcttct tgaagatgat atggaagtcc gaaaccgcct gacgcttgat        60
     cttaacgaga caacccgacg cttgcgagcg gcctggttga agtgtatctc gaacagcgtc       120
     ctctgccttt ctgatggaac attattagcg cagagagtcc caggcgtgca gaagagtggc       180
     agctacaaca cgtcatcgag taattcccga atccgggtaa tggctgccta ccactgcggt       240
     gccgaatggg caatggcgat gggcgatgac gcccttgagt cagcttgctc gaacctcgag       300
     cgttataaat cgctcggttt caaagtcgag gagtcctcaa aactggaatt ttgttctcac       360
     atttttgaga aagaggacct cgccattccg gtcaacaaag ccaaaatgtt gtacaagctt       420
     atacatggct acgaaccgga atgcggcaat gtggaagtgc tggtaaatta tctggccgcc       480
     tgtttctcaa ttcttaacga attgcggtca gatccttccc ttgtcgaaac tctccaccgg       540
     tggctggttc ttccagtaca gccacaaaag atataagggg agtataaaga acactagcca       600
     agcacacacg agttgcaagc attggaagtc tgagtctcgt taccaaaagt ccaaacaata       660
     gattataagt ttctcgcagg attttctagc ggtctattgt ctgcaatacc tgtaacggta       720
     attggacttt attttgtcta cctaaagatt tcagcacacg tgagagccat tgttaatgaa       780
     tacggccgtg gctagaaatc aaaatgcagg gaggcggagg cgaagaaatc aacgccctgc       840
     aaggcgtgac cgcgtggttg tggtcaaccc cattgggggg ccaccacgcg gaagacgaca       900
     acgaagaaac cgccgacgcc ctaatcgagg aggcagagct agaggacgaa gcccgggcga       960
     aacatttgta ttttcaaagg acaatctcac gggcagttcc tcaggaagta tcactttcgg      1020
     gccgtctcta tcagagagcc cagcattcag ctctggaata ctcaaggcct accatgaata      1080
     taaaatcagc atggtccagt tggagttcat ctccgaggcc tcttccacct cctcaggttc      1140
     catctcttat gagttggacc cccactgcaa gcttagctcc ctccaatcca cgattaataa      1200
     gtttggaatc accaagaatg gattgcgaag atggacagct aggcagatta acgggatgga      1260
     atggcacgac gcaaccgagg accaatttaa gatcctctac aaagggaatg gatcttcctc      1320
     ggttgcgggc agcttcagaa tcaccatcaa gtgccaggtc c                          1361
//