ID   GU323323; SV 1; linear; genomic RNA; STD; VRL; 1471 BP.
XX
AC   GU323323;
XX
DT   05-FEB-2010 (Rel. 103, Created)
DT   05-FEB-2010 (Rel. 103, Last updated, Version 1)
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DE   Trillium crinkled leaf virus isolate 20808694 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Trillium crinkled leaf virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus; unclassified Potyvirus.
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RN   [1]
RP   1-1471
RA   Monger W.A.;
RT   "A virus of Trillium plants that causes severe symptoms and plant death";
RL   Unpublished.
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RN   [2]
RP   1-1471
RA   Monger W.A.;
RT   ;
RL   Submitted (15-DEC-2009) to the INSDC.
RL   Novel Diagnostics, Food and Environment Research Agency, Sand Hutton, York
RL   YO41 1LZ, UK
XX
DR   MD5; f9f21a0844d0926a00d96491e874fbbd.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1471
FT                   /organism="Trillium crinkled leaf virus"
FT                   /host="Paris quadrifolia"
FT                   /isolate="20808694"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:598671"
FT   CDS             <1..1363
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D3JWC8"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D3JWC8"
FT                   /protein_id="ADB96031.1"
FT                   /translation="STVVDNTLMVIIAMYYSLEREGVTDHHDKIKFFANGDDLIIAIKP
FT                   EFVWVLDKLAASFEELGLNYEFGSRTTDRSELSFMSHRGVPREGIYIPKLDRERVVAIL
FT                   ERDRSEEPEHRLCAIVSAMIEAWGDDELLHEIRKFYSWLLGQLPFNELARQGKAPYIAE
FT                   TALRNLYTDKMATSEELMNYVCDTAIMLGETETYVTHQSSDVGTSGRQSVVPRDKDVDA
FT                   GSVGTFKVSRLKPLDRKMRFPSVGKTVIVNADHLLQYRPNQEDISNAVATKAQFATWYE
FT                   SLKADYGKNDEEMRIILDGLMVWCIENGTSPNLNGDWTMMDGDEQVSYPLKPVLDFAKP
FT                   TFRQIMGHFSDVAEAYIEIRNAAEKYMPRYGRQRNITDPSLARYAFDFYVTTSRTPTRA
FT                   VEACHQMKAAALAGSKNKLFGLDGNVGATEEDTERHTVGDSSAHVHNVAGARLM"
FT   mat_peptide     <1..604
FT                   /product="NIb RNA dependent RNA polymerase"
FT   mat_peptide     605..1360
FT                   /product="coat protein"
FT   3'UTR           1364..1471
XX
SQ   Sequence 1471 BP; 437 A; 294 C; 380 G; 360 T; 0 other;
     ttcaacagtg gtcgataaca ccctcatggt catcatagcc atgtattatt cacttgagag        60
     agagggtgtg acagaccatc acgacaagat caaatttttc gcaaatggtg acgaccttat       120
     aatagcaata aaacctgaat ttgtatgggt tttggacaag ctcgccgcat cattcgagga       180
     gttgggtctg aactatgagt ttggcagcag gactactgat agaagtgagc tttcattcat       240
     gtcgcataga ggcgtcccac gcgagggaat ttacatacca aagcttgaca gagagcgagt       300
     ggtagcaata cttgaacggg atcgcagtga ggaacctgaa cataggctct gcgcaattgt       360
     gtcagcaatg atcgaagcat ggggtgatga tgaattattg catgaaattc ggaagttcta       420
     cagctggctc ttgggacagc taccattcaa tgagttagct cgccaaggta aagcgccgta       480
     cattgcggaa acagcactcc gaaatctgta cacggacaaa atggcaacaa gtgaggagtt       540
     gatgaattat gtctgcgata ccgcaataat gcttggtgaa acagagacat atgtaaccca       600
     ccagagcagt gatgtgggta catcagggcg ccaatcggtc gtgccacgtg ataaagatgt       660
     tgatgcgggc tctgttggga cgttcaaagt gtctcgactt aagcctctcg atagaaagat       720
     gagattccca agtgttggga agactgtgat cgtgaatgct gaccacctct tgcaatacag       780
     accaaatcaa gaggatatct ctaatgcagt tgcaacgaaa gcacagtttg caacatggta       840
     tgaaagtctc aaggcggact atgggaaaaa cgatgaagaa atgcgcatca tacttgatgg       900
     tctgatggtg tggtgcattg aaaatggaac gtcaccaaat ctgaatggag attggacaat       960
     gatggacggt gacgaacagg tttcatatcc cttgaaacca gttcttgatt ttgccaaacc      1020
     aacgtttcgg caaataatgg gacactttag tgatgttgcg gaggcctata ttgaaattcg      1080
     aaatgcagct gaaaaataca tgcctcgata tgggcgtcag cgcaatataa ccgacccgag      1140
     tttagcacgt tatgcttttg acttttatgt cactacatca cgtacaccaa ccagggcggt      1200
     ggaagcatgc caccaaatga aagcagcagc tctggctggt agcaagaaca aattgtttgg      1260
     actcgatggg aacgtcggtg caacggaaga agatacagag aggcacacag ttggagactc      1320
     gagcgcacat gttcataatg tggccggtgc ccgtttaatg taaattagac ctgttttatg      1380
     tgtttttccg taacagctat taagcaaact tccattcgca taggacggca gtgaggtgac      1440
     ctcgagacta gcttatgcgc gtgtacaagt t                                     1471
//