ID   GU256532; SV 1; circular; genomic DNA; STD; VRL; 2605 BP.
XX
AC   GU256532;
XX
DT   24-NOV-2010 (Rel. 106, Created)
DT   30-NOV-2010 (Rel. 107, Last updated, Version 2)
XX
DE   Chickpea redleaf virus, complete genome.
XX
KW   .
XX
OS   Chickpea redleaf virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2605
RX   DOI; 10.1007/s00705-010-0763-4.
RX   PUBMED; 20734091.
RA   Thomas J.E., Parry J.N., Schwinghamer M.W., Dann E.K.;
RT   "Two novel mastreviruses from chickpea (Cicer arietinum) in Australia";
RL   Arch. Virol. 155(11):1777-1788(2010).
XX
RN   [2]
RP   1-2605
RA   Thomas J.E., Parry J.N., Schwinghamer M.W., Dann E.K.;
RT   ;
RL   Submitted (30-NOV-2009) to the INSDC.
RL   Horticulture and Forestry Science, Queensland Primary Industries and
RL   Fisheries, 80 Meiers Rd, Indooroopilly, Qld 4068, Australia
XX
DR   MD5; 7910931eae732b57272c07ef09f7aa52.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2605
FT                   /organism="Chickpea redleaf virus"
FT                   /host="Cicer arietinum voucher BRIP 52878a"
FT                   /isolate="Qld 22"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:887827"
FT   misc_feature    160..2450
FT                   /note="long intergenic region (LIR); includes origin of
FT                   replcation"
FT   CDS             161..442
FT                   /codon_start=1
FT                   /product="V2"
FT                   /note="movement protein"
FT                   /db_xref="GOA:E5DE91"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:E5DE91"
FT                   /protein_id="ADQ52696.1"
FT                   /translation="MREKKYQIFPPNPNYSEFSPPVEISHGENSQVNFQRVVTALIVVL
FT                   VAVGVLYLAYTLFIKDCILLFKAKKQRTTTEIGFGQTPGRSSDRPPQP"
FT   CDS             453..1187
FT                   /codon_start=1
FT                   /product="V1"
FT                   /note="coat protein"
FT                   /db_xref="GOA:E5DE92"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:E5DE92"
FT                   /protein_id="ADQ52695.1"
FT                   /translation="MPGTWGGKKKRSERKVVPNSKYASGRIPRNPSAKRDALQVATFSW
FT                   TSSGSGVKFSAGGGVFLMTNYPQGANDNCRHTNSTITYKLMTKNTVFLDSSVWPLVCRV
FT                   PVVFWLVYDKFPGASLPSTGDIFDGPVPFKNNPWVWTVSRAVCHRFVVKKTWTVILESN
FT                   GVDPTKKQSSSYYGPGPCNQWRVSNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVVAP
FT                   SQSCDVYVNGYFRVYFKSVGNQ"
FT   misc_feature    1184..1349
FT                   /note="short intergenic region (SIR)"
FT   CDS             complement(join(1344..1762,1849..2446))
FT                   /codon_start=1
FT                   /product="C1:C2"
FT                   /note="replication protein"
FT                   /db_xref="GOA:E5DE93"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:E5DE93"
FT                   /protein_id="ADQ52698.1"
FT                   /translation="MPRLNKKTSNFRFQSKYVFLTYPHCNSNPEALRDYLWEKLTRFII
FT                   FFIAVASEVHQDGSPHLHCLIQLTNKPNISDASFFDFEGNHPNIQPARNSEQVLDYISK
FT                   DGNIITKGEFKKHRVSPTKHDERWRTIINTATSKEHYLGMIRDQFPHEWASKLQWFEYS
FT                   ANKLFPDVEPPYQSPFPEASLQCHEEIQDWLNRDLYHQEPEQLRHRRKSLYICGPTRTG
FT                   KTSWARSLGRHNYFNGGVDFTTYDEQAAYNIIDDIPFKFCPNWKQLVGSQLDFTVNPKY
FT                   GKKRRIKGGVPCIILVNNDDDWMKDMSSHQKEYFQHNCMIHYMDEGETFIAPVSSSH"
FT   CDS             complement(1556..2446)
FT                   /codon_start=1
FT                   /product="C1"
FT                   /note="RepA"
FT                   /db_xref="GOA:E5DE94"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:E5DE94"
FT                   /protein_id="ADQ52697.1"
FT                   /translation="MPRLNKKTSNFRFQSKYVFLTYPHCNSNPEALRDYLWEKLTRFII
FT                   FFIAVASEVHQDGSPHLHCLIQLTNKPNISDASFFDFEGNHPNIQPARNSEQVLDYISK
FT                   DGNIITKGEFKKHRVSPTKHDERWRTIINTATSKEHYLGMIRDQFPHEWASKLQWFEYS
FT                   ANKLFPDVEPPYQSPFPEASLQCHEEIQDWLNRDLYLVSVEAYTLIHPNLNTQTATEDL
FT                   IWMDHYTRNPNNSDIEGSPSTYVDQPEQERHPGQGLSGGTTTSTEEWTSQPTTNRQHTT
FT                   SSTTSHSSSARTGNN"
XX
SQ   Sequence 2605 BP; 707 A; 502 C; 624 G; 772 T; 0 other;
     acagcaacgc gcccggccca atagcgagcg cgcgtcagcg cgcgagcgta agcagacaaa        60
     acccgacaaa agttagtgga tgaaaaagta aagttgatgt tgacataaag taagtgtgaa       120
     cgcctttaaa tagagaccac ttgttttccc gccaaaagcg atgagagaga aaaagtatca       180
     gatatttcct ccgaacccta attactctga attttcccct cctgtggaaa tttctcacgg       240
     tgaaaactct caggttaatt tccagcgagt agtaactgct ttaattgtag tactcgtggc       300
     tgtaggagta ttgtatttgg cgtataccct ctttattaaa gactgtattt tactgtttaa       360
     agcgaaaaag cagcgaacaa cgacggaaat tgggtttgga caaacccctg gtagaagcag       420
     cgatcgtcct cctcagcctt aggggaaaca gtatgccagg gacgtggggt ggtaagaaga       480
     agcggagtga acggaaggtt gttccgaact ccaagtatgc ttctggtcgt attccccgta       540
     atccctctgc taagagggac gcacttcagg tggctacctt ttcctggacc agttcaggtt       600
     cgggagttaa gtttagtgct ggtgggggtg tttttctcat gaccaattat cctcagggtg       660
     cgaacgataa ctgtcgtcac accaactcca ctatcaccta caagttgatg accaagaata       720
     ccgtgttctt ggatagttca gtttggccgt tggtatgtag ggttccggtg gtgttctggt       780
     tggtgtacga caagtttcca ggtgcttcat tacccagtac tggggatata tttgatggtc       840
     ctgtcccatt caaaaacaat ccttgggtct ggactgtttc aagggctgtg tgtcacaggt       900
     tcgtggtgaa gaagacctgg actgtgattc ttgagtctaa tggagttgac ccaacaaaga       960
     agcagtcatc cagttactat ggcccaggcc catgtaacca gtggcgtgta tctaataaat      1020
     tttttaaacg tttaggtgtt agtactgagt ggaagaactc ttccaccgga gacgtaggtg      1080
     acataaaaga aggggcgttg tacatagtag tagccccttc ccagagttgt gatgtttatg      1140
     ttaatggtta tttccgagtg tattttaagt ccgttggaaa tcaataaaat tattattctg      1200
     ttatgatttg catattattg aacacgaatt gaaagaaaat gaatttatta atgacaaccg      1260
     gaaattacat gaaaaagata ataaacagta aacacccaca aacaaattac actatacata      1320
     ccctccacgg aggagaggca cgttcagtga ctcgacgaca caggagcaat aaacgtctct      1380
     ccttcgtcca tgtaatggat catacagttg tgttgaaagt attctttctg atgtgaagac      1440
     atatctttca tccaatcatc atcattatta actaagatta tacatggaac ccctcccttt      1500
     attcttcttt ttttgccgta cttagggttc acagtgaaat ccaactgtga acccactaat      1560
     tgtttccagt tcgggcagaa cttgaatggg atgtcgtcga tgatgttgta tgctgcctgt      1620
     tcgtcgtagg ttgtgaagtc cactcctccg ttgaagtagt tgtgcctccc gagagacctt      1680
     gcccaggatg tctttcctgt tctggttggt ccacatatgt agagggactt ccttctatgt      1740
     ctgagttgtt cgggttcctg gtgtaatggt ccatccaaat aaggtcttca gttgcagttt      1800
     gagtgtttaa atttggatgt ataagagtgt aagcttcgac gcttaccagg tacaggtctc      1860
     tgtttagcca gtcttgtatt tcttcgtggc attgaaggga ggcctctggg aatggactct      1920
     ggtatggagg ctctacatca gggaatagct tattggcgct gtattcaaac cattgaagct      1980
     ttgaggccca ttcatgtggg aattggtctc ttatcattcc cagatagtgt tccttagacg      2040
     ttgcagtgtt gatgatagtt ctccatcgct catcatgttt tgtgggggag actctgtgtt      2100
     ttttgaactc ccccttggtg atgatgtttc cgtccttaga tatatagtca aggacttgtt      2160
     cagaatttct agctggttgt atattagggt ggtttccctc aaaatcaaaa aaagaagcat      2220
     cagatatgtt aggtttatta gtaagctgga taagacagtg aagatgggga gaaccatctt      2280
     gatgaacttc agaagcaaca gcaataaaaa aaataataaa acgtgtaagt ttttcccaga      2340
     ggtaatctcg tagagcctct gggtttgagt tgcaatgagg ataagtaagg aagacatatt      2400
     tagattgaaa acggaagttt gaggtttttt tgttaagacg aggcatgtta tccctaatga      2460
     atgtttgctc tgcactgtag acacaaactc tataccttat aacagcaatg gagttggagc      2520
     gagcaaaata tatagaggag cgcagcgaac cgaaaactta cacgtggctg cggtattggg      2580
     ccgggctccg tcgctaatta atgtt                                            2605
//