ID GU253915; SV 2; linear; genomic DNA; STD; VRL; 2752 BP. XX AC GU253915; XX DT 20-JAN-2010 (Rel. 103, Created) DT 21-JUN-2011 (Rel. 109, Last updated, Version 3) XX DE Tomato leaf curl Patna virus [Tobacco] segment DNA A, complete sequence. XX KW . XX OS Tomato leaf curl Patna virus [Tobacco] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RA Raj S.K., Snehi S.K.; RT "Begomovirus associated with leaf curl in Nicotiana tabacum L. cv. White RT Burley in Lucknow, India"; RL Unpublished. XX RN [2] RP 1-2752 RA Raj S.K., Snehi S.K.; RT ; RL Submitted (01-DEC-2009) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX RN [3] RC Sequence update by submitter RP 1-2752 RA Raj S.K., Snehi S.K.; RT ; RL Submitted (02-FEB-2010) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 247388962bb2acd908c214967cca7685. XX CC On Feb 2, 2010 this sequence version replaced gi:283856050. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Tomato leaf curl Patna virus [Tobacco]" FT /segment="DNA A" FT /host="Nicotiana tabacum L. cv. White Burley" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="05-Nov-2009" FT /db_xref="taxon:1046568" FT gene 133..483 FT /gene="AV2" FT CDS 133..483 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D3JP76" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3JP76" FT /protein_id="ADC33777.1" FT /translation="MRDAPLNEFLETVHGVRCRLAIKYLQLVENKYSPPAFGYDVISDL FT ILVIRARDYDEESSRYCHYHPRFQDSSPSELRQPICQPCCCPHCPRHKQKEDMGQSAHV FT QKAQDVQTVQKP" FT gene 296..1066 FT /gene="AV1" FT CDS 296..1066 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="involved in encapsidation of virion" FT /db_xref="GOA:D2XTC7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D2XTC7" FT /protein_id="ADB45301.2" FT /translation="MKNPAAIVITTPASKIRRRLNFDSPYVSRAVAPTVLVTNKRRTWV FT NRPMYKKPKMYRLYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICVSDVTRGNGLTHR FT VGKRFCVKSIYVLGKIWMDENIKTKNNTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNEP FT STATVKNDMRDRFQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENH FT TENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1063..1467) FT /gene="AC3" FT CDS complement(1063..1467) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="AC3; REn; increases viral replication" FT /db_xref="GOA:D2XTC8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2XTC8" FT /protein_id="ADB45302.1" FT /translation="MDSRTGELITATQAESGVYIWTVKNPLYFKISQHHERPFLSNNDI FT ITIQVQFNYNLRKALGIHQCFLICQIWTRLRPQTWRFLRVFKYQCMQYLNSLGVISINN FT VIRAMSHVLYNVLEGTIDAELSHIIKFNIY" FT gene complement(1208..1615) FT /gene="AC2" FT CDS complement(1208..1615) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /note="AC2; TrAP" FT /db_xref="GOA:D2XTC9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2XTC9" FT /protein_id="ADB45303.1" FT /translation="MQNSSPSPSRCTQVPIKVQHRIAKKRPVRRRRIDLPCGCFYLFGL FT DCASHGFTHRGTHHCNSGREWRVYLDGQKSPLFQDIPTPRETISIQQRHNHHTSPVQLQ FT PEESVGDTPVFSNLPNLDSFTSSDLAFLKSI" FT gene complement(1521..2603) FT /gene="AC1" FT CDS complement(1521..2603) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="AC1; Rep" FT /db_xref="GOA:D2XTD0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2XTD0" FT /protein_id="ADB45304.2" FT /translation="MPRADVFRLNAKNYFLTYPKCSLTKEDALSQLENLQTPVNKKYIR FT VCRELHENGEPHLHVLIQFEGHSPCTKDRFIDMVSPSRSAHLLPILQGAKSISDVKSHL FT GKDGATLEWGEFLIHGRSARGGQQTANDAYATALNASSKSEALRVIKELAPKDYVLQFH FT NLNANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPMQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDLGIKNAEFFTLTEPL FT YSGTHQSPAQNSQEETSSQT" FT gene complement(2144..2452) FT /gene="AC4" FT CDS complement(2144..2452) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3JP77" FT /protein_id="ADC33778.1" FT /translation="MRMGNLIFTCSSSSKGTPRAQRTDSSTWSPHLDQHISFRSSRVLN FT QFQTSSPIWERTEPPSNGESSLSMEDLQEGVNRQPMTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2752 BP; 757 A; 539 C; 619 G; 837 T; 0 other; accggatggc cgcgattttt ttaaaagtgg tcccccccac aatagagtgt cggctaataa 60 aaacgctccc tcagagttaa attagtggtg gtccccctaa ttaaatcttg gtcaccaagt 120 ttgttttcag aaatgaggga tgcacctctc aacgagtttc ttgaaaccgt acatggtgtt 180 aggtgtaggt tagcaattaa gtatttgcag ttagtagaaa ataagtattc tccacccgct 240 tttgggtacg atgtaattag tgatttaata ttagttatcc gtgcaagaga ttatgatgaa 300 gaatccagcc gctattgtca ttaccacccc cgcttccaag attcgtcgcc gtctgaactt 360 cgacagccca tatgtcagcc gtgctgttgc ccccactgtc ctcgtcacaa acaaaaggag 420 gacatgggtc aatcggccca tgtacaaaaa gcccaagatg tacagactgt acagaagccc 480 tgatgttccc aaggggtgcg aaggtccgtg taaggtccag tcttatgaac agagacatga 540 tatagcccat acaggcaagg tgatatgtgt ttctgatgtt actcgtggta atgggcttac 600 tcaccgtgtg ggtaagagat tttgtgtgaa gtctatttat gttttgggta agatctggat 660 ggatgagaac atcaagacca agaataatac gaacactgtt atgttcttcc tggttcgtga 720 tagaaggccc tttggtactg ctatggattt tggacaggtt ttcaacatgt atgacaatga 780 acccagtact gcaactgtca agaatgatat gagagatcga tttcaggtct taaggaaatt 840 tactgcaacg gttacaggtg gtcagtatgc ttccaaggaa caggcattag ttaggaaatt 900 tatgaagatt aataattatg tagtgtataa tcatcaagag gctgccaagt atgaaaatca 960 tactgagaac gctcttctat tgtatatggc atgtacacat gccagtaatc ctgtgtatgc 1020 aactttgaag atcagaatct atttttatga ttctgttcag aattaataaa tattgaattt 1080 tattatatgg gataattcgg catcaattgt gccttctaat acattgtaca atacatgaga 1140 cattgcccta attacattat taatactaat aactcctaaa ctatttaaat attgcataca 1200 ttgatattta aatactctta agaaacgcca agtctgagga cgtaaacgag tccagatttg 1260 gcaaattaga aaacactggt gtatccccaa cgctttcctc aggttgtagt tgaactggac 1320 ttgtatggtg attatgtcgt tgttggatag aaatggtctc tcgtggtgtt gggatatctt 1380 gaaatagagg ggatttttga ccgtccaaat atacacgcca ctctctgcct gagttgcagt 1440 gatgagttcc cctgtgcgtg aatccatgtg atgcgcagtc aagtccaaat aaataaaagc 1500 aaccgcaggg aagatctatt ctacgtctgc gaactggtct cttcttggct attctgtgct 1560 ggactttgat gggtacctga gtacaacggc tcggtgaggg tgaagaattc tgcattcttt 1620 atgcccagat cttttagtgc tgaattcttt tcctcatcca agtactcttt atatgatgat 1680 gtcgggcctg gattgcagag gaagattgtg ggaattccac ctttaatttg catgggcttc 1740 ccgtactttg tgttgctttg ccagtccctt tgggccccca tgaactcctt aaagtgcttt 1800 agatagtggg gatcgacgtc atcaatgacg ttgtaccagg catcattact gtacaccttt 1860 ggactcaggt caaggtgacc acataaatag ttatgtggac ccagagacct ggcccacatg 1920 gtcttccctg ttctactctc accctctatg actatactga cgggtctcca aggccgcgca 1980 gcggcatccc ttacattttc tgatacccag cattcaagtt cttctggaac ttgatcgaaa 2040 gaagaagata aaaagggaga aacaaaaacc tctaaaggag gtgcaaaaat cctatctaaa 2100 ttagcattta aattatgaaa ttgtagtaca taatctttgg gtgctaattc cttaatgact 2160 ctaagagcct ctgacttact gcttgcgtta agtgctgtgg cgtaagcgtc attggctgtc 2220 tgttgacccc ctcttgcaga tcttccatgg ataaggaact ctccccattc gagggtggct 2280 ccgtcctttc ccagatggga cttgacgtct gaaattgatt tagcaccctg gaggatcgga 2340 aggagatgtg ctgatctaga tggggagacc atgtcgatga atctgtcctt tgtgcacggg 2400 gagtgccctt cgaactggat gagcacgtga agatgaggtt ccccattctc atgaagttcc 2460 ctgcagactc ttatgtattt tttgtttact ggggtttgta ggttttctaa ttgtgagagg 2520 gcatcttctt tagttagaga gcatttggga taagtgagaa aatagttttt tgcatttaat 2580 ctaaaaacgt ccgcacgtgg catgtgggca atcggtgtac aaactaattg tatggcaatc 2640 ggtgtattgg ggtgcaatat ataagtgtac accaaagggc attattgtaa ttttggaaag 2700 aaatttaaaa ttcaaatttc aaaattccca aatcggccat ccgtataata tt 2752 //