ID GU253914; SV 2; linear; genomic DNA; STD; VRL; 2756 BP. XX AC GU253914; XX DT 20-JAN-2010 (Rel. 103, Created) DT 13-AUG-2014 (Rel. 121, Last updated, Version 4) XX DE Tomato leaf curl Palampur virus isolate Mahuadhab segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl Palampur virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2756 RA Raj S.K., Srivastava A., Kumar S.K., Snehi S.K.; RT "Tomato leaf curl Palampur virus associated with yellow mosaic, leaf curl RT and distortions in Bitter cucumber 'Pehetul' (Cucumis callosus (Rottler) RT Cogn.) in Mahuadhab, Lakhimpur-Kheri, U. P., India"; RL Unpublished. XX RN [2] RP 1-2756 RA Raj S.K., Srivastava A., Kumar S.K., Snehi S.K.; RT ; RL Submitted (01-DEC-2009) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX RN [3] RC Sequence update by submitter RP 1-2756 RA Raj S.K., Srivastava A., Kumar S.K., Snehi S.K.; RT ; RL Submitted (06-AUG-2014) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 78b5f565b06b7e277d18d97e16e51f18. XX CC On Aug 6, 2014 this sequence version replaced gi:283856045. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Tomato leaf curl Palampur virus" FT /segment="DNA-A" FT /host="Cucumis callosus (bitter cucumber 'Pehetul')" FT /isolate="Mahuadhab" FT /mol_type="genomic DNA" FT /country="India:Lakhimpur, U. P." FT /collected_by="S. K. Raj" FT /collection_date="15-Oct-2009" FT /db_xref="taxon:526476" FT gene 120..485 FT /gene="V2" FT CDS 120..485 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B3CJQ8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B3CJQ8" FT /protein_id="AII85542.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLKEIEKTYSPDTIGYDLVRDL FT ISVVRARNYGEASSRYLHFNARIESTPSSELRQPVCCPCSCPYCPRHKGKGMGEQTHEP FT ETKILPDVSKLGRAQGL" FT gene 280..1050 FT /gene="V1" FT CDS 280..1050 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:D2XTC3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D2XTC3" FT /protein_id="ADB45297.2" FT /translation="MVKRPADIYISTPASKARRRLNFDSPYAVRAAVPIVRATKAREWV FT NRPMNRKPRFYRMYRSSDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLKKWHSTVTGGTYASKEQALVKRFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHPSNPVYATLKIGIYFYDSVTN" FT gene complement(310..828) FT /gene="C5" FT CDS complement(310..828) FT /codon_start=1 FT /gene="C5" FT /product="C5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A0A076K059" FT /protein_id="AII85543.1" FT /translation="MPFFEHLISITMHILNSGSARFVVEHIKNFAEILWRTRRSTITHQ FT EKHHTIRVVLGLDILVHPDLAKHVDGLHTESLSDAMCETGSTGNVANTHHLTNMGDIVP FT GFKRLHLTWAFTAPGHVRASIHPVKSWFPVHGSVHPFPCLCGADNRDSCTDSIRAVEVQ FT TTACFRCGR" FT gene complement(1047..1457) FT /gene="C3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:D2XTC4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2XTC4" FT /protein_id="ADB45298.1" FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKILKHDERPCLTNH FT DIITVRIQFNHNLRKALGLHKCFLTFQIWTGLRPQTGRFLRVFKTQVLKYLDMLGVVGI FT TNVIRAAYHVLDNVLQRTVDVWTTYDVQLNTY" FT gene complement(1177..1596) FT /gene="C2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activator protein" FT /db_xref="GOA:D2XTC5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2XTC5" FT /protein_id="ADB45299.1" FT /translation="MQSSLHSRDHSIPVAKTSLPKKKKKNIRRRRVDLQCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRVYLGRSKSPVFQNFETRRETLPHEPRHYNGPNTVQPQP FT EESTGASQVFSNIPDLDGLTPSDWAFLESFQNPGP" FT gene complement(1499..2602) FT /gene="C1" FT CDS complement(1499..2602) FT /codon_start=1 FT /gene="C1" FT /product="replicase protein" FT /db_xref="GOA:D2XTC6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2XTC6" FT /protein_id="ADB45300.2" FT /translation="MAPPTRFRINAKNYFLTYPKCSLTKEEALSQLQNLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVAPSRSAHFHPNIQGAKSASDVKTYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH FT NLMTNLDRIFPSRIEVYRSPFTVSSFDRVPPELVDWVSSNLRCSAARPFSAALPIRPIG FT LVLEGDSRTGKTMWARSLGPQNYLCGHLDLNPRVYSNDALYNVIDDVDPHYLKHFKEFM FT GAQRDWQSNTKYGKPMMIKGGIPTIFLCNKGPQSSYKEFLDEEKNAALKQWALKNAVFI FT TLEGPLYSGRENVAPQEEEEEHPQETS" FT gene complement(2269..2445) FT /gene="C4" FT CDS complement(2269..2445) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B3CJR4" FT /protein_id="AII85544.1" FT /translation="MGLRISMFSSNLKENSSAKITDSSTWLPQVGQHISIRTFRELNQR FT QMSRHTSTKTETF" XX SQ Sequence 2756 BP; 742 A; 602 C; 610 G; 802 T; 0 other; accgaatggc cgcggtgcct tttgtgtggg tccagaacca atgaaattcg agatacatgg 60 cttatttaat gcgtggggac caataaatag acttgctcac caagcttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttcctg aaagcgttca tggtcttagg tgcatgctag 180 ctgtaaaata tctcaaagag atagaaaaga cctactctcc ggacacaatc ggatacgatc 240 ttgttcgtga cctaatctct gtcgtccgtg ccagaaacta tggtgaagcg tccagcagat 300 atctacattt caacgcccgc atcgaaagca cgccgtcgtc tgaacttcga cagcccgtat 360 gctgtccgtg cagctgtccc tattgtccgc gccacaaagg caagggaatg ggtgaacaga 420 cccatgaacc ggaaaccaag attttaccgg atgtatcgaa gctcggacgt gcccaggggc 480 tgtgaaggcc catgtaaggt gcaatctttt gaatccaggc acgatgtctc ccatattggt 540 aaggtgatgt gtattagcga cgttacccgt ggaaccggtc tcacacatcg cgtcggaaag 600 cgattctgtg tgaagtccgt ctacgtgctt ggcaagatct ggatggacga gaatatcaag 660 accaagaacc acacgaatag tgtgatgttt ttcttggtgc gtgatcgtcg acctacgggt 720 gcgccacaag atttcggcga agtttttaat atgttcgaca acgaacctag cactgccact 780 gttaagaata tgcatcgtga tcgatatcaa gtgctcaaaa aatggcattc gactgtgacg 840 ggaggaacat acgcgtcgaa ggaacaagca ttagttaaac gttttattag agtcaataat 900 tacgttgtat ataatcaaca agaggccggc aagtatgaga atcatactga aaatgcatta 960 atgttgtata tggcctgtac tcatccatca aatcctgtat atgccacttt aaaaatcggg 1020 atctattttt acgattcggt gacaaattaa tatgtattaa gttgtacatc atatgttgtc 1080 catacatcaa ctgttctttg caatacattg tctaatacat gataagctgc tcttattaca 1140 ttagtaattc caacaacacc taacatatcc aggtacttaa ggacctgggt tttgaaaact 1200 ctcaagaaac gcccagtctg agggcgtaag cccgtccaga tctggaatgt tagaaaacac 1260 ttgtgaagcc ccagtgcttt cctcaggttg tggttgaact gtattcggac cgttataatg 1320 tcgtggttcg tgaggcaagg tctctcgtcg tgtttcaaaa ttttgaaata caggggattt 1380 ggaacgtccc agatatacac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatgtaatac gaacaaccac actgcaaatc 1500 aactcgtctc ctgcggatgt tcttcttctt cttcttgggg agcgacgttt tcgcgaccgg 1560 aatagagtgg tccctcgagt gtaatgaaga ctgcattctt caaagcccac tgcttcagtg 1620 ctgcattctt ttcttcgtcc aagaattctt tatagctgct ttgtggtcct ttattgcaca 1680 agaagatagt gggaatgccg cctttaatca tcatcggctt tccgtatttt gtgttgcttt 1740 gccagtcacg ctgggccccc ataaattctt taaaatgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtataaa gcgtcgttac tgtaaaccct agggtttaga tccaagtgac 1860 cgcacaagta attttggggt cccaaactac gcgcccacat tgttttgccc gtacgactat 1920 cgccctccaa tactaaccct atgggtctaa tcgggagcgc agcggaaaaa ggccgcgcag 1980 cggaacacct caaatttgac gacacccaat cgacgagttc tggcggaact ctgtcgaagg 2040 acgaaacagt aaatggcgaa cgataaactt cgattcgaga aggaaaaatc cgatctaaat 2100 ttgtcattaa attgtgaaac tgcaacacat aatcttttgg tgctaattct tttagcacct 2160 tcaatgcgtc ttctttattt ccagtattaa ttgcttgtgc gtatgcatcg ttagctgttt 2220 gttgaccacc acgagcagat cgtccatcga tctggaaaac accccactct aaaacgtctc 2280 cgtctttgtc gatgtatgtc ttgacatctg acgctgattt agctccctga atgttcggat 2340 ggaaatgtgc tgaccgactt ggggcaacca agtcgaagaa tctgttattt ttgcactgga 2400 attttccttc aaattggatg agaacatgga tatgcggaga cccatcttcg tgaagctctc 2460 tgcagatttt tatgaatttc tttgatgtag gggtttctag gttttgtaat tgggaaagtg 2520 cctcttcttt agttagagag cactttggat atgtaaggaa atagtttttt gcatttattc 2580 tgaaacgagt tggcggagcc ataaacctcg tatttccaac cggtgtctct caacttcttg 2640 tattatattg gtgtctgggg tcctatatat acataagacc ctaaatggca taattgtaat 2700 tttagagata aaattacttt aattcaaact cctatagcgg ccattcgtat aatatt 2756 //