ID GU245894; SV 1; linear; genomic RNA; STD; VRL; 7798 BP. XX AC GU245894; XX DT 11-AUG-2010 (Rel. 105, Created) DT 16-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Salivirus A strain SH1 polyprotein gene, complete cds. XX KW . XX OS Salivirus A OC Viruses; Riboviria; Picornavirales; Picornaviridae; Salivirus. XX RN [1] RP 1-7798 RX DOI; 10.3201/eid1608.100087. RX PUBMED; 20678331. RA Shan T., Wang C., Cui L., Yu Y., Delwart E., Zhao W., Zhu C., Lan D., RA Dai X., Hua X.; RT "Picornavirus salivirus/klassevirus in children with diarrhea, China"; RL Emerg. Infect. Dis. 16(8):1303-1305(2010). XX RN [2] RP 1-7798 RA Shan T.; RT ; RL Submitted (25-NOV-2009) to the INSDC. RL Shanghai JiaoTong University, School of Agriculture and Biology, 800 RL Dongchuan Road, Shanghai 200240, China XX DR MD5; bd71cd117686d4f3edfd17aae0c31b74. DR EuropePMC; PMC3264332; 22114340. DR EuropePMC; PMC3298310; 20678331. DR EuropePMC; PMC3648030; 23542627. DR EuropePMC; PMC4759076; 26893429. DR EuropePMC; PMC4824248; 27056215. XX FH Key Location/Qualifiers FH FT source 1..7798 FT /organism="Salivirus A" FT /host="Homo sapiens" FT /strain="SH1" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="stool" FT /collection_date="Mar-2009" FT /db_xref="taxon:1330524" FT CDS 625..7734 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:D9YWZ3" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:D9YWZ3" FT /protein_id="ADL27742.1" FT /translation="MEGSNGFSSSLAGLHSSPSSFRLFGHFLSLPEDNQEGPRPSGWYR FT FPPTLPVNVYLNEQFDNLCLAALRYPGSKSYPSVYTLFPDVSPLKIPQSVPAFAHLVQR FT QGLRRQGNSITNIYGNGNDVTTDVGANGMSLPIAVGDMPTASSSEAPLGSNKGGSSTSP FT KSTSNGNVVRGSRYSKWWEPAAARALDRALDHAVDATDAVAGAASKGIKAGATKLSNKL FT TGSQTTALLALPGNIAGGAPSATVNANNTSISSQALLPSVNPYPSTPAVSLPNPDAPTQ FT VGPAADRQWLVDTLSWSETIAPLTVFSGPKALTPGVYPPTIQPNTGVYPLPAALCVSHP FT ESVFSSAYNAHAYFNCGFDVTVVVNASQFHGGSLVVLAMAEGLGDITPADSSTWFNFPH FT AIINLANSNAATLKLPYIGVTPNTSTEGLHNYWTILFAPLTPLATPTGSPTSVKVSLFV FT SPIDSAFYGLRFPIPFPTPQHWKTRAVPGAGTYGSVVAGQEIPLVGYAPAAPPRDYLPG FT RVRNWLEYAARHSWERNLPWTSADEVGDQLVSYPIQPETLANTQTNAAFVLSLFSQWRG FT SLQISLIFTGPAQCYGRLLLAYTPPSANPPTTIDEANNGTYDVWDVNGDSTYTFTIPFC FT SQAYWKTVDIGTSSGLVSNNGYFTVFVMNPLVTPGPSPPSATVAAFLHVADDFDVRLPQ FT CPALGFQSGADGADVQPAPTSDLSGGNPTTDPAPRDNFDYPHHPVDPSTDLAFYFSQYR FT WFGLNESLTPLDVTGGLFYHVSLNPINFQQSSLLSVLGAFTYIYANLSLNINISAPSQP FT CTFYVYYAPPGASVPTVQSLAELSFFTHTATPLNQTASTNITVSIPYSSPQSVLCTSFG FT GFGLQNGGDPGNLHSNTWGTLILYVDLPQNDSVSVSAYISFRDFEAYVPRQTPGVGPIP FT TSTSIVRVARPTPKPRMVRRQGGTLADLILTPESRCFIVAHTTAPYYSILLVNPNEEYA FT IGMFSHGDESILRYSSRGGTRLTPTAPAFFLCAAASVDTVLPYSISQSHLWLTDLTGIP FT LRAIPPLTLFLSAGAALCAGAQTLIAVAQGGSTPETPPIPNRALLRRQGLGDLPDAAKG FT LSAALESVARVAGDADIATSSQAIASSINSLSSSIDGATAFMQNFFSGLAPKNPTSPLQ FT HLFAKLIKWVTKIIGSLIIICNNPTPSALIGVSLMLCGDLAEDITEFFSNLGNPLAAVF FT YRCARALGLSPTPQSAAQAAGGRQGVRDYNDIMSALRNTDWFFEKIMSHIKNLLEWLGV FT LVKDDPRTKLNSQHEKILELYTDSVTASSTPPSELSADAIRSNLDLAKQLLTLSHAANS FT VTHIQLCTRAITNYSTALSAYSLVGTPGTRPEPLVVYLYGPPGTGKSLLASLLASTLAQ FT ALSGDPTNDHSPSAPDCKFYHGDSGQPVHYIDDIGQDPDGADWADFVNIVSSAPFIVPM FT DDVNDQGRFYTSRVVIVTSNFPGPNPRSARCVAALDRRLHIRLNVTARDGVAFSAAAAL FT KPSEPPTATRYCKFSNPLTQFTMFKLAVDYKSVVLPNTPLSCFDELVDFILGSLRDRAS FT VNSLLSGMVRTDVTRQGGNAGAPAPSAAPLPSVLPSVPSQDPFTRAVNENRPVSFLSKL FT WSWRAPIFAASSFLSLIAATLTIVRCLRDLRSTQGAYNGTPVSKPRKKDLPKQPVYSGP FT VRRQGFDPAVMKIMGNVDSFVTLSGSKPIWTMSCLWIGGRNLIAPSHAFVSDDYEITHI FT RVGSRTLDVSRVTRVDDGELSLISVPDGPEHKSLIRYIRSASPKSGILASKFSDTPVFV FT SFWNGKPHSTPLPGVVDEKDSFTYRCSSFQGLCGSPMIATDPGGLGILGIHVAGVAGYN FT GFSARLTPDRVQAFLSNLATPQSVLHFHPPMGPPAHVSRRSRLHPSPAFGAFPITKEPA FT ALSRKDPRLPEGTDLDAITLAKHDRGDIATPWPCMEEAADWYFSQLPDKLPVLSQEDAI FT RGLDHMDAIDLSQSPGYPWTTQGRSRRSLFDEDGNPVPELQEAIDSVWDGGSYIYQSFL FT KDELRPTAKARAGKTRIVEAAPIQAIVVGRRLLGSLINHLQGSPLQHGSAVGRNPDIHW FT TQIFHSLTPFPNVWSIDYSCFDATIPSVLLSAIASRIAARSDQPGRVLDYLSYTTTSYH FT VYDSMWYTMIGGNPSGCVGTSILNTIANNIAVISAMMYCNKFDPRDPPVLYCYGDDLIW FT GSNQDFHPRELQAFYQKFTNFVVTPADKASDFPDSSSIFDITFLKRYFVPDDVHPHLIH FT PVMDEQTLTNSIMWLRGGEFEEVLRSLETLAFHSGPKNYSAWCETIKAKIRENGCDATF FT TPYSVLQRGWVSTCMTGPYPLTG" XX SQ Sequence 7798 BP; 1373 A; 2804 C; 1635 G; 1986 T; 0 other; ttcccctgca accattacgc ttactcgcat gtgcattgag tggtgcatgt gttgaacaaa 60 cagctacact cacatggggg cgggttttcc cgccctacgg cttctcgcga ggcccacccc 120 tcccctttct cccataacta cagtgctttg gtaggtaagc atcctgatcc cccgcggaag 180 ctgctcacgt ggcaactgtg gggacccaga caggttatca aaggcacccg gtctttccgc 240 cttcaggagt atccctgcta gcgaattcta gtagggctct gcttggtgcc aacctccccc 300 aaatgcgcgc tgcgggagtg ctcttcccca actcacccta gtatcctctc atgtgtgtgc 360 ttggtcagca tatctgagac gatgttccgc tgtcccagac cagtccagta atggacgggc 420 cagtgtgcgt agtcgtcttc cggcttgtcc ggcgcatgtt tggtgaaccg gtggggtaag 480 gttggtgtgc ccaacgcccg tactcagggg atacctcaag gcacccagga atgccaggga 540 ggtaccccgc ttcacagcgg gatctgaccc tggggtaaat gtctgcgggg ggtcttcttg 600 gcccacttct cagtactttt caggatggag ggctctaacg gattctcgag ttcgttggct 660 ggcctccatt cttcgccctc gtcattccgc cttttcggcc actttctctc ccttcctgag 720 gataatcagg agggcccccg tccctccggc tggtatcgct tccctcccac cctccccgtc 780 aatgtctacc tcaatgaaca atttgacaac ctttgcctgg cagctctacg ctacccaggc 840 tccaaatcat acccctctgt ttacactctg ttccctgatg tttcacctct caagattccc 900 caatctgtcc ctgcctttgc tcaccttgtc cagcgacagg ggctgcggcg gcaaggcaat 960 tccatcacca acatctatgg caacggcaac gacgtcacta ctgacgtcgg tgccaatggg 1020 atgtcccttc ccatcgccgt aggtgacatg cctaccgcct cttcctctga agctcctctt 1080 ggttccaaca agggtggctc ttccacttct ccaaaatcca catccaatgg caatgttgtc 1140 cgtgggtccc gctactccaa gtggtgggaa cctgcggccg cacgcgcctt ggatcgtgct 1200 cttgaccatg ctgttgacgc gactgacgca gtcgccggtg ccgcttccaa gggcatcaag 1260 gccggtgcca ccaagctctc caacaagctt actggctctc aaaccacggc tcttcttgcc 1320 cttcctggca acatcgctgg cggcgccccc tctgcgacag tcaacgccaa caacacttcc 1380 atctcctctc aagctctctt accctctgtc aacccctacc cttccactcc tgctgtctct 1440 cttcctaacc ccgacgctcc cactcaggtt ggccccgcgg ccgaccgaca gtggctcgtc 1500 gacacccttt cttggtctga gacaattgca cccctcactg ttttctctgg acccaaggcc 1560 ctcacccctg gcgtctatcc tcctaccatt cagcccaaca ctggtgtcta ccctctgcca 1620 gcggcactct gtgtttccca tcctgaatct gtcttttcct ctgcctacaa cgcccacgcc 1680 tacttcaact gtggcttcga cgtcacagtc gtcgtgaacg cctcccagtt ccacggcggc 1740 tcgctggtcg ttttggccat ggccgaaggc ttgggcgaca tcaccccagc tgattcttcc 1800 acttggttca acttccctca tgcaatcatc aatctggcta attctaatgc tgccaccctc 1860 aagctcccct acattggagt cactcccaac acctccactg aaggactcca caactactgg 1920 accattctct ttgcccctct gactcctctt gccactccga ctggctcacc cacttctgtc 1980 aaggtctctc tctttgtctc cccaattgac tcagctttct atggcctcag attccccatc 2040 cccttcccaa cgccccagca ctggaagaca cgtgctgtcc ctggtgctgg cacctacggc 2100 tcggtcgtgg ctggccagga aatccccctg gttggttatg cccccgccgc ccctccccgc 2160 gactacctcc ccgggcgcgt acgcaattgg ctcgagtacg ccgcccgcca ctcctgggag 2220 aggaacttac cctggacctc cgccgacgaa gtcggtgacc agcttgtttc ctaccccatc 2280 caaccggaga ctctcgcaaa cacccaaacc aatgcagctt ttgtcttgtc cctcttttcc 2340 cagtggcgcg gctctctgca aatctccctc atcttcaccg gccctgccca gtgctacggc 2400 cgtctccttc ttgcttacac ccccccctcc gccaatcccc ccaccaccat cgatgaggcc 2460 aacaacggca cctacgatgt ctgggacgtg aatggcgact ccacctacac tttcaccata 2520 cctttttgct cgcaggccta ctggaagact gtcgatatcg gcacgtcatc tggtttggtc 2580 tcgaacaatg ggtacttcac tgtctttgtc atgaaccctc ttgtcactcc tggcccctcc 2640 cccccttctg ccactgttgc tgcttttctc catgtcgcgg acgacttcga cgtccgcctc 2700 cctcagtgcc ccgccctcgg tttccagtcg ggagccgatg gtgcagatgt ccaacctgcc 2760 cccaccagtg acctctcagg tggtaacccc accactgacc ccgcccctcg tgataacttt 2820 gattaccccc accatcctgt tgatccttcc actgatctgg ctttctactt ctcacagtac 2880 cgctggtttg gcctcaatga atctctcact ccattggacg tcaccggtgg tctgttctac 2940 catgtttccc tcaaccccat caacttccag caaagctccc tcctcagtgt ccttggtgca 3000 tttacctata tttatgctaa cctctccctc aacatcaata tctctgctcc ttcccagccc 3060 tgcactttct atgtctacta tgcccctcct ggcgcgtctg tccctactgt gcagagtctt 3120 gcagaacttt ctttcttcac ccacactgct acccctctca accagactgc atcaaccaac 3180 atcactgtct ctattcccta ctcttccccc cagtctgttc tctgcacgtc ttttggtggt 3240 ttcggcctcc agaacggcgg agacccgggc aaccttcact ccaacacatg gggaactctc 3300 attctctatg ttgacctccc ccagaatgac agtgtctcag tctctgccta catctctttc 3360 cgcgactttg aagcatacgt ccctcggcaa acccctggtg tcggtcccat ccccacgagc 3420 acctccatcg ttcgtgtcgc ccgacccacc cccaaacccc gcatggttcg ccgccaaggt 3480 ggcacccttg cagacctcat cctcacccct gagagtcgtt gcttcattgt tgcccacact 3540 accgctccct actattccat ccttctggtc aatcccaacg aggagtatgc cattggcatg 3600 ttctcacatg gtgacgagtc aattctccgc tactcgtcac gtggtggcac tcgcctcacc 3660 cccaccgccc cagccttctt tctctgtgct gctgcgtctg ttgacacagt actcccctac 3720 tctatctctc aatcacacct ctggctcact gatctgactg gtatccctct ccgcgcaatt 3780 ccccctctca ccctcttcct ctccgcggga gctgccctgt gtgccggcgc acaaacactg 3840 atagccgtcg cacagggtgg ttccaccccg gaaacccccc ccatccctaa ccgcgctctc 3900 ctccgtcgcc agggccttgg tgatctcccg gatgcggcca aaggcctgtc cgccgcactc 3960 gagagcgttg ccagggtcgc tggcgatgct gacattgcta cttcctctca agccattgct 4020 tcctctatca actccctttc cagttccatt gatggtgcta ccgccttcat gcaaaacttc 4080 ttctctggcc tcgccccaaa gaaccccacc tcccctctcc agcatctctt tgctaagctc 4140 atcaaatggg tgaccaaaat catcggttca ctcattatca tctgtaacaa ccccaccccc 4200 tcagctctca ttggtgtttc cctcatgctc tgtggtgacc tcgccgagga catcacggag 4260 ttcttctcta atcttggaaa tcctcttgct gctgtttttt atcgctgtgc tagggctctt 4320 ggcctttccc ccactcccca atctgccgct caagccgccg gtggacgcca gggtgttcgt 4380 gattacaacg acatcatgag cgctctgcgg aacaccgact ggtttttcga gaagatcatg 4440 tcccacatca agaatcttct cgagtggctt ggggtcctcg tcaaagatga ccccaggacc 4500 aagctcaact cgcagcatga aaagatcctg gaactctaca ctgactctgt cactgcctct 4560 tcaacccccc cctctgagct ttctgcggac gccatccggt ccaacctgga cctggctaag 4620 caacttctca ctctctcgca tgctgccaac tctgtcactc acatccagtt gtgcacacgc 4680 gctatcacta attactccac agctctttct gcctactccc tcgtgggtac gcccggtacg 4740 cggccagagc cactggtcgt gtacctgtac ggaccccccg ggactggcaa atccctcctt 4800 gcttctcttc ttgcttccac ccttgctcaa gccctttctg gtgaccccac caacgaccac 4860 tccccttctg cccctgactg caaattctac catggtgact ctggccagcc cgtccactac 4920 atcgatgaca tcgggcaaga ccccgatggc gccgattggg ctgactttgt gaacatcgtt 4980 tcttctgccc ctttcatcgt tcccatggat gacgttaacg accagggacg gttttacacc 5040 tcccgcgttg tgatcgtcac ctcgaacttt cctggcccca acccccgctc tgctcgctgc 5100 gtggctgcgc tagaccgtcg cctgcacatt cgcctgaatg tgacggcacg tgatggcgtt 5160 gccttctcag cagcagctgc tctcaagccc tctgaacccc ccactgcaac tcgctactgc 5220 aagttctcca accccctcac ccagttcacc atgttcaaat tggctgttga ttacaaatca 5280 gttgtcctcc ccaacacccc tctctcctgc ttcgacgaac tggtcgactt catcttgggc 5340 tctcttcgcg accgggcctc ggtgaactcc ctcctctctg gcatggtacg taccgacgtt 5400 acacgccagg gcgggaacgc cggcgccccc gctccttctg cagctcctct cccctccgtt 5460 ctcccttctg tcccttctca ggaccccttc acccgtgcgg tgaacgagaa ccgcccggtc 5520 tccttcctct ctaaactctg gtcgtggcga gctcctatct tcgccgcttc ctctttcctt 5580 tccctcattg ctgcaactct caccattgtc cgctgtctcc gtgacctgcg gtccacccag 5640 ggtgcataca atgggacccc tgtttcgaaa ccacggaaaa aggatctccc caaacaacct 5700 gtgtactctg ggccagtccg ccgtcagggt ttcgaccctg ccgtcatgaa gatcatgggc 5760 aatgttgact cctttgtcac tctttcgggt tctaaaccca tctggactat gtcttgcctc 5820 tggattggcg gtcgcaatct gattgctcct tcccacgcat tcgtctccga cgattatgag 5880 atcacccaca tccgcgttgg atcgcgcacg cttgacgtgt cgcgtgttac gcgggtggat 5940 gacggtgagt tatctctgat ctcggtgccg gatgggccgg agcataagag tctgatccgc 6000 tacatccgct ctgcttcccc caagtctggc atcctagcct ccaaattctc tgacactcct 6060 gtctttgtct ccttctggaa tggcaaaccc cactccactc ccctccctgg ggtcgtggac 6120 gagaaagact cgttcacgta ccgctgctct tctttccagg ggttgtgcgg ttcgccgatg 6180 atcgccaccg accccggcgg cctgggtatc ctcggtatcc atgtcgctgg ggtagctggt 6240 tacaacggct tctccgcgcg cctcactcct gaccgtgtcc aagctttcct ttccaacctt 6300 gctacacctc agtctgtcct ccacttccat ccacctatgg gtccgcctgc gcacgtctcc 6360 cgtcgcagtc ggctccaccc ctcccccgcc ttcggtgctt tccccatcac caaggaacca 6420 gcagcccttt ctaggaagga ccctcgtctc cccgagggca ccgacctgga tgccatcacc 6480 ctcgccaagc acgacagggg cgacatcgcg acgccctggc cttgcatgga agaggcggct 6540 gattggtact tttcccagct ccctgacaaa ctcccagttc tttcccagga agatgccatt 6600 cgtggtctcg accacatgga tgccatcgac ctctcccaat ctcctggcta cccttggaca 6660 acacagggcc ggtctcgccg gtctctgttt gacgaggatg gcaaccctgt ccctgagctt 6720 caggaggcca tcgattccgt ctgggacggt ggttcctaca tctaccaatc tttcctcaag 6780 gatgagttgc gccccacggc gaaagccaga gctggaaaaa cccggattgt ggaggcggcc 6840 ccgatacaag caattgtggt cggacgccgt cttcttggtt ctctcatcaa ccaccttcag 6900 ggtagtcctc tccagcatgg cagcgccgtt ggacgcaatc ccgacatcca ctggactcaa 6960 atctttcact ctctcacccc tttccctaat gtctggtcta tcgattactc ttgctttgac 7020 gccactatcc cctctgtcct tctctctgcc attgcctccc gcattgctgc ccgctctgac 7080 caacctggtc gtgttctgga ctatctctct tacactacta cttcctacca tgtctacgac 7140 tccatgtggt atactatgat cggtggcaat ccctctgggt gtgttgggac ctccattctc 7200 aacacaattg caaacaacat tgcagtcatc tccgcgatga tgtattgcaa caaatttgac 7260 ccacgggacc ctccggtctt gtactgctat ggagacgact tgatatgggg ctccaatcaa 7320 gactttcacc ctcgtgaact ccaggctttc tatcagaaat tcaccaactt tgttgtcacc 7380 cctgctgaca aagcttctga ctttcctgac tcttcttcca tctttgacat caccttcctc 7440 aaacgctact tcgtccctga tgatgtccac ccccacctca tccatcctgt gatggatgaa 7500 caaaccctca ccaactcgat catgtggttg cgtggtgggg agtttgagga ggtgttgcgg 7560 tcactcgaga ctctggcctt tcattccgga ccgaagaatt attcggcctg gtgtgagaca 7620 atcaaggcta agattcgaga gaacggctgc gacgccacct ttactcccta ctccgtcctc 7680 cagcgtggtt gggtttccac ctgcatgact ggaccctatc cccttaccgg gtagctcctc 7740 ctgaaaccct cgtcccaggt ccagtctcac cccctccccc ccccctctct ctctccct 7798 //