ID GU199334; SV 1; linear; genomic RNA; STD; VRL; 8912 BP. XX AC GU199334; XX DT 13-JUL-2010 (Rel. 105, Created) DT 13-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Capsicum chlorosis virus isolate CaCV-Ch-Har segment L, complete sequence. XX KW . XX OS Capsicum chlorosis virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus; OC Capsicum chlorosis orthotospovirus. XX RN [1] RP 1-8912 RX DOI; 10.1007/s00705-010-0681-5. RX PUBMED; 20443030. RA Kunkalikar S.R., Sudarsana P., Rajagopalan P., Zehr U.B., Ravi K.S.; RT "Biological and molecular characterization of Capsicum chlorosis virus RT infecting chilli and tomato in India"; RL Arch. Virol. 155(7):1047-1057(2010). XX RN [2] RP 1-8912 RA Ravi K.S., Kunkalikar S.R., Rajagopalan P.A., Usha B.Z.; RT ; RL Submitted (13-NOV-2009) to the INSDC. RL Molecular Virology, Maharashtra Hybrid Seeds Co Ltd., Jalna - Aurangabad RL Road, Jalna, Maharashtra 431203, India XX DR MD5; ca3807e21e774a0dd0b4fa90e06a2394. XX FH Key Location/Qualifiers FH FT source 1..8912 FT /organism="Capsicum chlorosis virus" FT /segment="L" FT /host="Capsicum annuum" FT /isolate="CaCV-Ch-Har" FT /mol_type="genomic RNA" FT /country="India" FT /collected_by="Suresh Kunkalikar" FT /note="serogroup: WSMoV" FT /db_xref="taxon:163325" FT 3'UTR complement(1..247) FT CDS complement(248..8881) FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:D8WMZ8" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR009056" FT /db_xref="InterPro:IPR015841" FT /db_xref="UniProtKB/TrEMBL:D8WMZ8" FT /protein_id="ADC40030.1" FT /translation="MNIQTINSFLDTSGEITVYLQRIKDEIMSMSNIVERSYPEGKGVI FT DSGLNSIMSMNYILDKIEDMKSRYHQSSSSIDQKEMETEIFLFLDKYKELELMRHDLFG FT VLAGRKLHFAPKQRSDVFLKDCLMSYIEFCNTSTSIMNKISDIDGLKDKLVFQHLTPDN FT YTIYKETSGERACLMIYDWKVSVDTMSETKTSENYYTSVWKTFKDVTVEGQPFLERHPI FT FITIVVLNPSGNMSITATTSRVIQEFRNSPYKTFNDRRKAALAAKLISVNSLGQLIGLG FT TDCFRRFYAETQAFKNSLLSKVGEYMNRSSEVFFSHWSYEYRKTNLSNNQISQDIIDLI FT NAMPNNKIKKEMIVHFLFESYIYFKETMSDLHLKDRFEGYKAHCEMMDVVPIETEDKLK FT EYLDKNEDSFEKLYEDHFVKIKSDVLARKAKEVEIDSIETAFNINAEEYQKEYPGCFTN FT DLQETKTNFSICWSPMTVVLKMDELNYNNSILQSFRDSFSDQPKLIHHRSYGGSKMDTH FT FSMTLFNLVRTCLVDLSVDTTGHSKAALEDVVDIKDGSIQVKRTDASQTWREVGSVKTR FT NGNEFTLSPSTSSDARKHFFKGLSLMYVDMGKKKKLDIKNELKSKIQEFKAQKEDDISE FT SPSGEYDISKANIPYQMSLKSVTHNKKLIRHDNPDVKYFCESMIEAMYVLHGMDERKNK FT NGKINTVHNEYCSNPASLFAKGNLIESEMTIAKNIHEVSKELSIYTYSEDMMQLAKGLM FT VADRFMKKTDFKILTCANTSMICLAFKGDGINTGKSGVPYITLHRVEKDIQPYFVSLYT FT KELVASFKSGNYFVNIMKPQRLNQVRLLSLFKAPSKVPIFFSQYSLLSTEIKKWLNQPS FT IDVFTCPENKIKYLQKILFSSVIIGTVTKLSRMGIFDFMRYAGFLPLSDYSNIKEYIAE FT KFDPDITNVIDCFFVSGIKDLLLKMEGINLSNSIKPLTIDQENDMSGGISDLDIVCPIT FT GSTLKSIECLYNNVYLAIYMMPKSLHTHVHNLTTLLSVPAEWELKFREKMCFKLDEEIK FT PKKEMFNDSGPFSINGVLNVKTLFDYYKKNISNVGACRSNIEDKEDFLSAPYKIKTLTS FT SKKCSKADIIKSTEIVAALKSVFGKTPDDIKGSDLYILKGVLKCFEEDKESLANFMEVE FT DLDESKYFHFFSNMMSGSNKVLMKTNQDKFYYKSHPLTVETFMKVRYGYFKTTTVLKSK FT KVSEELYDLIKEFNKITEIDLEALEKLGRGLKGNRVTFIQLLEFILMKSRTNAGNTDFL FT VSVFEKMQRTKMDREIYLMSMKTKMMLYFIEHTYKHVAQADPSEAISISGDYKIKNLAS FT LSYDTITNYNTALQKNLECKMAFLSADQSKWSASDLTYKYILAVIMNPILTTGEINLMC FT ECIMMYVKLKRVCIPTDVFLSLKRGQTEYGSYGTALSVLTDNLETNTFPVSMNWLQGNL FT NYLSSVYHSCAMMGYEKSMKRMKDYDFTIRWMVHSDDNATSMVVRGDIKELLVSFNCSS FT LSELLFRTIQSHFKSYCITLNPKKSYASESEVEFISERIINGAVIPLYCRHLANCSTES FT SHNSYFDDLMSLSIHITMLLRKGCPNELIPFAYAAIQVQSLSIYSMLPGEENDISTIVK FT EIDFPLTKREIPICAGGWMYAPIELLSILGPSSNDQLIYYKIILGFFNIRDFNSLKKNV FT NSLGYIDLRINELFKRLMSGKITIADKKMICMGKSFKTSLMSEDCDSLSVGMKSQSMIT FT QIIKLPSFVSEGSLLKNSSFVDFCKLFPNLKKNTDILDALKPNNIDERNLGEVNESRFL FT SQIQFEELSRHMSSHPESFLIAPMNDKDYILTNLYTYSSVSKRNQMSNQSTEKLALDRI FT LRSKAKTFLDPNSKEMVSYKENMSLKMKEIMNAAGNDFKIINTISELMVRDMNFEMVVS FT LIENTVANASIPKANYNFRWFITEKVPSMIEGSPGLIVMSAVYGMDYLIELGPQKLPLT FT ETSISILHDIFGNRKTFDDVKECIQNNNHQYKTEEFQSADVLKRYVLSINYMIQSQNKL FT LSINTCFSRKNFPFYSKYNLGKTFITNTLAIWSTIYSRLTNINFCTNLNFVIDRSSRLI FT ISLQRDMNLEKLIDCCAYISDRLQSLFPDMTIESIRQVLCRLNFNGVDLMKKMKSEISE FT VKRAINNIKTSTHVTLSFRPQMITMSKHAAWLYNFGYINEKEFKFVIDQIRQSEVHYIK FT TDEQDIRGYYVSGHTYKIGIKTQYNYGQLAMSNQDISIHLHSPYEYQREDDGKIWNVHV FT KSAYKLLQKLLIDKQSAIKTFLNVRSDLMPNQFCIHESSNKTLLILINDTTKPIMLERI FT KFKGDIKYIPSSEFAWNMMSNQSKYKLRTAETGECYTELYKLIESDNLMDTILMNLKKS FT LEYGNEMENLIEQSISGIDDEETIDYIKDSVDQIHKLAIEGLETCKTSEEFENYLERVE FT FQTTVNFHKELLEQIVEDKYRATDRINSAVEKLTQWTNSLSTFKDVCIMLKFSMINDSK FT GIKTYKANGADFHSLSASEVMTSQGFDLFEILEAIKACEACHTSNSVLNLIAFKDVKNK FT TFIPGFKRIKPNTVHFDYEMKLNNEVMNKFYEYKTISLQDIKVSDRVKEVLENHGFSIT FT GQNLKLAEADLELNPVEIIDDSSTYDQIARQMRLTKKKSSYLIPANTLLLGELMKFLML FT CIKGEEHDIMKLLRSHFAMRPVRENRLLCVQDAIMTCRISGFIQRHFHDDRKEISFLVV FT PDGLENFISLATPKYTIQEPFGAEALIKKALLETYDSWKYKILKRIRNYIGADCGFLTE FT KCLYFNITHEEISGMIFNAVSKIDLEAIYLKPKKRNKRLKLHDVFNKFLGSSSDSLTRE FT " FT 5'UTR complement(8882..8912) XX SQ Sequence 8912 BP; 2627 A; 1594 C; 1343 G; 3348 T; 0 other; agagcaatcg agcaacaaat taaagtattc taaactcagt ctcattatta gttagaaata 60 ctatttctga ctctattgtc tggtttagaa ttcataacta gacagcaacc tgatataata 120 tgaactattt ttatcctttt taaaagaata gtgcatttgt tgatttcatg ctctttccct 180 gctttcgaac ttatattatg tattctattg tttatccttt tagtctcgcc catgaattgt 240 ctacatttta ttctcgggtt agagaatcag agcttgatcc taaaaactta ttgaaaacat 300 catgcaattt taatcttttg tttctttttt taggcttcag gtagattgcc tccaagtcga 360 ttttgcttac agcattgaat atcataccac taatttcttc atgggttatg ttgaaataca 420 aacatttttc ggtaaggaat ccacaatcag cacctatgta attccttatc ctttttaata 480 ttttgtattt ccaggaatca taggtctcca gcagagcttt tttaattaag gcttctgccc 540 cgaatggctc ctgtatagta tatttgggag ttgctaaaga tataaagttt tctaagccat 600 ctggtaccac caaaaaagat atttcttttc tatcatcatg aaaatgcctt tgaatgaatc 660 cacttatcct acatgtcatg atagcatcct gaacacaaag caatctgttt tctctcactg 720 gtctcattgc aaaatggctt ctcaatagtt tcattatatc gtgttcttct cctttgatgc 780 acaacatcaa aaatttcatt aactctccca atagcagagt gtttgctggg atgaggtaag 840 agcttttttt ctttgtcaac ctcatttgtc ttgcaatctg atcataagta gatgaatcat 900 caatgatttc tacaggattc aactctagat ctgcttctgc caattttaaa ttttggccag 960 ttatactgaa tccatggttc tctaaaactt ccttaactct gtctgaaacc tttatgtcct 1020 gcagagaaat tgtcttgtat tcataaaatt tattcatcac ttcattgttt aacttcatct 1080 cataatcaaa atggactgtg ttaggtttga tccttttgaa tccaggtatg aaggttttgt 1140 tttttacatc tttgaaagct attaaattca gaacagagtt gctggtatga caggcttcac 1200 atgcttttat agcttcaaga atctcaaaca agtcaaatcc ttgtgatgtc atcacttcac 1260 ttgctgagag agaatggaag tcagctccat ttgctttata tgttttaatt cctttagaat 1320 cattgatcat tgaaaatttg agcatgatgc aaacatcttt gaatgttgat aaactatttg 1380 tccattgtgt tagtttctct acagcagaat ttattctatc tgtggctcta tatttatcct 1440 ctacaatctg ctctaacaac tctttgtgga aattaaccgt tgtttgaaat tcaactcttt 1500 caagatagtt ttcgaactcc tctgaagttt tgcatgtttc taaaccctct atagctagtt 1560 tatggatttg atcaacagaa tctttaatat agtctatagt ttcttcatca tctattcctg 1620 aaattgattg ctctatcaag ttttccatct catttccata ttccaaactc tttttgagat 1680 tcattaaaat agtatccatt aaattatcgc tctctattag tttatataat tctgtatagc 1740 attctcctgt ttcagctgtt cttagtttat atttagattg gttgctcatc atgttccatg 1800 caaactctga agacggtatg tattttatat cacctttaaa tttaatcctt tcgagcatta 1860 ttggttttgt tgtatcatta atcaagatca gtagtgtttt gtttgagctt tcatgaatgc 1920 aaaactgatt gggcattaaa tcagatctta cattgagaaa tgttttaata gcactctgtt 1980 tgtctatcaa caatttttgt agcagcttgt atgcagattt tacatgaaca ttccaaattt 2040 tcccatcatc ttccctttga tattcataag gtgaatgtaa atgaattgaa atatcctggt 2100 ttgacatagc taattgccca taattgtact gagtctttat cccgatcttg tatgtatggc 2160 ctgaaacata gtatccccta atatcttgct catccgtctt tatgtaatgg acttcactct 2220 gccttatttg gtcaattaca aacttgaact ctttttcatt aatatatcca aaattgtata 2280 accacgctgc atgtttactc atggtaatca tttgcggtct gaatgacaaa gtcacatgag 2340 tcgatgtttt tatgttgttt atagctctct taacttcaga aatttctgac ttcattttct 2400 tcattagatc aactccattg aaattcaatc tgcataatac ttgtcttata gattctatag 2460 tcatatctgg gaataggctc tgcagtctgt cagaaatata agcacagcaa tcaatcaatt 2520 tttccaaatt catatctctt tgcagtgata tgataagtct tgaactccta tcaataacaa 2580 aattcaagtt agtgcaaaaa ttgatatttg tcagtctgct atatatagta ctccagatag 2640 ctaatgtgtt agttatgaat gttttaccca gattgtattt agaataaaaa ggaaaattct 2700 ttctggaaaa gcaagtgttt atagagagga gtttattttg tgattggatc atataattga 2760 tactcaagac atatctcttt aatacatcag cactctgaaa ttcttctgtt ttatattgat 2820 gattattatt ttgaatgcat tctttaacat catcaaatgt cttcctattc ccaaagatat 2880 catgcaatat agaaatggat gtttctgtca gaggaagctt ttgaggccct aattcaatca 2940 aataatccat tccataaaca gctgacatta caattaatcc cggtgagcct tcaatcatgc 3000 taggaacttt ttctgtaata aaccatctga aattatagtt tgctttagga atcgaagcat 3060 tagcaacagt attttctatt agagagacca ccatttcaaa attcatgtct cttaccatga 3120 gttcagatat tgtgtttata attttgaaat cattcccagc tgcattcatt atctctttca 3180 tcttcaaaga catattctct ttgtatgaga ccatttcttt ggagttagga tcaagaaatg 3240 ttttagcttt agatcttaag attctgtcta gagctagctt ctcagtagat tggtttgaca 3300 tttgattcct tttacttaca ctgctgtatg tgtaaagatt tgtcaatatg taatctttgt 3360 cattcatagg tgcaatcaag aatgattctg ggtgagagga catatgtctg cttagctctt 3420 cgaattgaat ttgagataag aacctggatt catttacttc cccaagattt ctttcatcta 3480 tattgttggg ctttaatgca tccaatatgt cagtgttttt cttcaaattg ggaaataatt 3540 tgcagaaatc tacaaagcta gagttcttca atagggagcc ttcactgaca aagctaggca 3600 gttttataat ctgcgttatc atggactggg atttcattcc tacacttaag ctatcacaat 3660 cttcagacat taaactggtc ttaaaagatt tacccataca tatcattttc ttatctgcaa 3720 tagttatttt tccagacatc agccttttaa acaattcatt tattctcaga tctatatagc 3780 ctagagagtt gacattcttt ttaaggctat tgaaatctct aatgttgaaa aaacctagaa 3840 ttattttata atagattagt tgatcatttg aagaaggacc aaggatagac aaaagctcta 3900 taggagcata catccagccg ccagcacaaa taggaatttc tctttttgtt agagggaaat 3960 caatctcttt gacaatggta cttatatcat tttcttcgcc tggtagcatt gagtatatgc 4020 tcaatgattg aacttggatt gctgcataag caaatggaat tagttcattt gggcaacctt 4080 tccttagaag catggtgata tggattgaaa gagacattaa gtcatcaaaa tagctattat 4140 gggaactttc agtgctgcaa ttagccaaat gtctgcagta aagaggaatg acagcgccgt 4200 taattatcct ttcagatatg aattctacct cagattctga agcatagctt tttttaggat 4260 tcagtgttat gcaataactc ttaaaatgtg attgtatagt tctgaatagc agttctgata 4320 aacttgaaca attgaagctt accaacaatt ctttaatgtc tcctctaacc accatggaag 4380 ttgcattatc atcggagtgc accatccatc tgatagtgaa atcataatct ttcattcttt 4440 tcatagattt ctcataaccc atcatagcac aagaatgata tacagatgac aagtagttca 4500 agttcccttg aagccagttc attgatactg ggaacgtgtt tgtctctagg ttatctgtca 4560 agacagatag tgcagttcca taagatccat attctgtttg tcctcttttt aaactgagaa 4620 atacatcagt aggaatgcaa actctcttaa gctttacata catcattatg cactcacaca 4680 ttagatttat ctctcctgtt gttaggatag gattcattat aacagccaat atgtacttat 4740 atgttaagtc tgatgctgac cattttgatt gatctgctga caaaaatgcc attttgcatt 4800 ctaggttttt ttgcaatgct gtattgtaat ttgttatagt atcatatgac aatgaagcaa 4860 gatttttaat tttgtaatct cctgatatcg atattgcttc agaaggatct gcttgggcaa 4920 catgtttgta tgtgtgctca ataaaataca gcatcatctt tgtcttcatg ctcataaggt 4980 aaatctctct atccattttt gttctttgca ttttctcaaa tactgaaaca aggaaatctg 5040 tgtttcctgc attagttcta gacttcatta aaataaactc aagtaattgt ataaatgtta 5100 ccctgttacc ttttaatcct ctacctagtt tttctagagc ctctagatca atttctgtta 5160 tcttattgaa ctctttaatc aggtcatata actcttcact aacctttttt gacttcaaaa 5220 cagttgttgt cttaaaataa ccatatctga ctttcatgaa tgtttctaca gttaaaggat 5280 gactcttgta atagaatttg tcttgatttg ttttcattaa aactttattg ctgcctgaca 5340 tcatgttgga gaaaaagtgg aaatattttg attcatctaa gtcttcaact tccatgaagt 5400 tggctaaaga ttccttgtct tcttcaaagc attttaaaac tcctttaagt atgtaaaggt 5460 cagatccctt gatatcatct ggtgttttcc caaatactga tttaagagct gccacaattt 5520 ctgtactctt tataatgtca gcttttgaac acttcttaga ggatgttaat gtttttattt 5580 tgtatggagc cgataagaaa tcttctttat cttctatatt tgatctacaa gcacccacat 5640 tgcttatgtt cttcttgtaa taatcaaata gagtttttac attaagaacc ccattgatgg 5700 aaaatggacc tgaatcattg aacatttctt tcttaggttt tatctcttcg tctagcttaa 5760 aacacatttt ctccctaaat ttaagttccc attcagcagg aacacttaaa agagttgtga 5820 gattatgcac atgtgtgtga agtgattttg gcatcatgta gattgccaaa tagacattat 5880 tatagagaca ttctatggac tttaacgtag accctgtaat agggcaaaca atatccaaat 5940 ctgatattcc acctgacatg tcattttctt gatctattgt cagaggtttt atactgttgc 6000 tcaaatttat tccttccatt ttcaagagaa ggtcttttat tcctgataca aaaaagcaat 6060 caataacatt tgttatgtct gggtcgaatt tttctgctat atattccttt atatttgaat 6120 agtcagacaa tggcaaaaat cctgcatatc tcatgaaatc aaatattccc attctactga 6180 gcttagtaac tgttcctata attacagaag aaaacaagat tttctgaaga tatttgattt 6240 tattttctgg gcaagtaaat acatcaatag aaggttggtt taaccacttc ttaatttctg 6300 tgctcaacag tgaatattgt gaaaaaaaaa ttggaacttt gctgggtgcc ttaaataaac 6360 taagaagtct cacttggttt aatctttgcg gtttcattat gttgacaaag taattcccgg 6420 acttgaaaga agcaactaat tcttttgtgt atagagaaac gaaatatggc tgtatatctt 6480 tttcaactct atgcaaagtt atatatggaa cacctgattt ccctgtgttt ataccatctc 6540 ctttgaatgc aagacatatc atgcttgtat ttgcacatgt taaaattttg aaatcagtct 6600 ttttcataaa tcgatctgct accatcaaac cctttgcaag ttgcatcata tcttcactat 6660 atgtgtatat agataattct ttagacactt catggatatt cttagcaatt gtcatctctg 6720 actctatcaa attgccttta gcaaataatg atgctggatt agagcaatat tcattatgaa 6780 ctgtgtttat cttaccattc ttgtttttcc tctcatccat tccatgtaga acatacatag 6840 cttctatcat cgactcacaa aagtatttga catcaggatt atcatgtctg atgagtttct 6900 tgttgtgtgt aacacttttt aagctcattt ggtaaggtat attagctttt gatatatcat 6960 attctccact aggactctct gatatgtcat cctctttttg agctttaaac tcttggattt 7020 tgcttttaag ttcgtttttt atgtccaact tcttcttctt tcccatatcc acatacatca 7080 aacttaaacc cttgaagaaa tgttttcttg catcactaga agttgaggga gacaatgtaa 7140 attcattgcc atttctggtc ttgacagaac ctacttctct ccatgtttgt gaagcgtcag 7200 ttctcttgac ttggatgcta ccatctttaa tatccacaac atcttctaaa gcagcttttg 7260 aatgtcctgt ggtatcaaca ctcagatcaa ccaaacaggt tcttactaga ttgaaaagag 7320 tcatagaaaa atgagtatcc attttgctac ctccatatga tctgtgatga attaacttag 7380 gttgatctga aaatgaatct ctgaaggatt gtaggataga attattatag ttaagctcat 7440 ccattttcaa tacgactgtc atcggtgacc aacaaattga gaaattagtt tttgtttctt 7500 gaagatcatt agtaaaacag cctgggtatt ctttctgata ttcttctgca tttatattaa 7560 aggcagtctc tatgctgtct atttctactt ctttagcttt cctggccaaa acatctgatt 7620 ttattttaac aaaatgatct tcatacaact tttcaaatga gtcctcattc ttgtctaggt 7680 attcttttag cttgtcttct gtttcgatag gaacaacatc catcatttca caatgtgctt 7740 tatatccctc aaatctatct ttcaaatgta aatcactcat agtctctttg aagtaaatat 7800 aactttcaaa caaaaagtgt acaatcattt ctttctttat tttattattt ggcatggcat 7860 taatcaaatc aattatgtcc tgactgattt gattgtttga tagatttgtt ttcctgtact 7920 catatgacca gtgactaaaa aagacttctg atgatctatt catgtattca cctacttttg 7980 acagaaggga attcttgaat gcttgtgttt cagcataaaa tcttcggaaa caatctgtgc 8040 ccaaacctat caattgtcct aaagaattga cagatataag tttagctgca agggctgcct 8100 tccttctatc attgaaagtc ttatagggag aatttctgaa ctcctggatg accctactcg 8160 ttgtagcagt tattgacata tttccactag gattcagtac aactatggtt ataaatatag 8220 gatgtctttc tagaaaaggt tggccttcca cagtgacatc tttaaatgtc ttccaaacac 8280 tagtgtaata attttcagat gttttagttt ctgacattgt gtctacagag actttccaat 8340 catatatcat caaacatgct ctttcacctg atgtttcctt gtaaattgta tagttatctg 8400 gtgtcaaatg ttggaagact aacttgtctt ttaatccatc aatgtcagat attttattca 8460 tgatcgatgt agaagtatta cagaattcta tataagacat tagacagtct tttaagaaga 8520 catctgacct ttgtttggga gcaaaatgca attttcttcc agcaagcaca ccaaaaagat 8580 catgtctcat cagttcaagt tctttatatt tatctaagaa taaaaagatt tctgtttcca 8640 tttctttttg atcaatagat gaagaacttt ggtggtatct agacttcatg tcttcaattt 8700 tatctaaaat ataattcatt gacattattg aattcaaacc agagtcaatg acacctttac 8760 cttcagggta acttctctcc acaatattcg acattgacat gatttcatct tttatccttt 8820 gtagatacac agtaatttcc cctgatgtat ctaggaaact gtttatagtt tggatgttca 8880 ttactgatat tttattgttg cacgattgct ct 8912 //