ID GU190159; SV 1; linear; genomic RNA; STD; VRL; 5879 BP. XX AC GU190159; XX DT 16-DEC-2009 (Rel. 103, Created) DT 09-NOV-2012 (Rel. 114, Last updated, Version 4) XX DE Sugarcane yellow leaf virus isolate CHN-FJ1, complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5879 RX DOI; 10.1007/s11262-012-0774-1. RX PUBMED; 22752564. RA Gao S.J., Lin Y.H., Pan Y.B., Damaj M.B., Wang Q.N., Mirkov T.E., RA Chen R.K.; RT "Molecular characterization and phylogenetic analysis of Sugarcane yellow RT leaf virus isolates from China"; RL Virus Genes 45(2):340-349(2012). XX RN [2] RP 1-5879 RA Gao S.J., Wang Q.N., Chen R.K., Huang X.D., Guo J.L.; RT ; RL Submitted (11-NOV-2009) to the INSDC. RL Key Laboratory of Sugarcane Genetic Improvement, Ministry of Agriculture, RL Fuzhou, Fujian 350002, China XX DR MD5; d6fd8bdc03951be4d21db448b4ca8752. DR EuropePMC; PMC3784903; 24426276. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5879 FT /organism="Sugarcane yellow leaf virus" FT /host="sugarcane cv. FN96-0907" FT /isolate="CHN-FJ1" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Dec-2006" FT /db_xref="taxon:94290" FT 5'UTR 1..65 FT CDS 66..836 FT /codon_start=1 FT /product="ORF0 protein" FT /note="encodes an RNA silencing suppressor" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:D2K8S7" FT /protein_id="ACZ73833.1" FT /translation="MLFNEFSVEGIKFRAHESTSSVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVQNYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTIGRHIHIKRQYLKSV FT LLWLARNKLYYRVKRCRSKRFVLEQDNIGPELFRTQLLKYAGLDVFQDVARLQDLLERG FT YDTFRSVLGVHLLEHERFVSRILEQPVMEPDQAVRLCFHYHNALDHDDDDSGLETDFDN FT LSLGRPYINGLPPNEKIIFIHSNLVGRSTYSHDI" FT CDS 241..2193 FT /codon_start=1 FT /product="multifunctional protein" FT /note="ORF1" FT /db_xref="GOA:D2K8S8" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:D2K8S8" FT /protein_id="ACZ73834.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSISRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWSLIKLYVYAFTIITRLIMTMTILAWKPILT FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKSPPPDKPVENATAKEQTPAPTVEKAMVADQPTPDQGNEPSGADHLKTP FT ESTPLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLHQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGESPPVISQGSGNAANSPRYTIPQNRRAHNGGSASSQSTQIWRPKSP FT VSGGLPSAPKPKRQV" FT CDS <1734..3452 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2; produced by predicted -1 translational FT frameshift of ORF1" FT /db_xref="GOA:D2K8S9" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2K8S9" FT /protein_id="ACZ73835.1" FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD FT RPELHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWGESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPDMASEVAGFGWPSFGAQAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVNSLELDA FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG FT LSTDREAREFIESLSKTVGCSPAEVIHGWRNKIVPTDCSGFDWSVADWMLEDDIEVRNL FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK" FT CDS 3647..5677 FT /codon_start=1 FT /transl_except=(pos:4235..4237,aa:OTHER) FT /product="putative aphid transmission factor" FT /note="ORF5; produced by translational readthrough of TAG FT stop codon of ORF3" FT /db_xref="GOA:D2K8T0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D2K8T0" FT /protein_id="ACZ73838.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVDDAPPTPTPTPTPPAPTPAPTPKY FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFV FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYR FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTTAMSARLPIQVSAPSEVYTPEAPE FT QPTNEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE FT SPIYAPPPPPSLVPTHADTLRQADKVRRALMANASRSASPPPTNTEIPVLGATDTASLS FT GSLRGGSLRGNLGSRPSLPRVADSPPRSVSPARSETSTLQGGSLSGGSLRGGNLQALPE FT ATREQRREYERLKNSRGKTVAKAHAKEHGYKPPKSSSSLFG" FT CDS 3647..4237 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="ACZ73836.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3678..4130 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="ACZ73837.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" FT 3'UTR 5678..5879 XX SQ Sequence 5879 BP; 1579 A; 1534 C; 1414 G; 1352 T; 0 other; acaaaatata tcgggaggga aacccctgat atattggacc aagcctctga cttgtaaact 60 gctctatgct tttcaacgaa ttctctgttg agggaattaa attcagagca cacgagagca 120 cttcatccgt ctttcgtggg gaggtttcca ggtgtttgac ctactacaga gtcttcgcct 180 gcaagtgggt tgagttgacc taccaagatc cactcacacg ccatctagtt caaaactact 240 atggccccaa cactcccgtt tacaactggc tggagcacat acgccttatt gttgtcacta 300 tggtgcctat tctgctcctg ccagacacaa ccattggacg gcacatccat atcaagagac 360 agtacctcaa gtctgtcctt ttatggcttg cccgcaacaa actctactat agagttaaga 420 gatgccgttc caagcggttt gtactcgagc aagataacat cggccccgaa cttttccgaa 480 ctcagctact caagtatgct gggttggatg tttttcaaga tgtggctcga ttgcaagacc 540 ttctcgagag aggctacgac actttccgat cggttcttgg agtacacctt ctcgaacacg 600 aaaggtttgt tagtcgaatt cttgaacaac ctgttatgga gcctgatcaa gctgtacgtt 660 tatgctttca ctatcataac gcgcttgatc atgacgatga cgattctggc ctggaaaccg 720 attttgacaa tctgtctctt ggtcgtcctt acatcaatgg tctaccacct aatgagaaaa 780 ttattttcat tcattcaaat ttggtgggtc gtagcaccta ttctcatgat atataggacc 840 gtcacgtaca ttcacagaag gttgttcgct tcacgtgggg acgagaaaat ggtccaaggt 900 tttaaaagtt ttgccgtccc catgtcacca ccaggacact cagtgcttga gatagtacac 960 cccgatgatt ctcacatggg atatgcatcc tgtgttcgat tgaaaaacgg ggaagaggct 1020 ctcatgacat ccgttcactg cataagcgat tctttcaagg ttcgctcgtt caggaatggt 1080 atcaagatcc ctctaacgga attccaagta ctgttgcccg ccaatgcgat ggacattgtt 1140 cttcttcgag gcccacctga gtggaagtcc atccttggag ccaaagcagc ccacttcact 1200 ccagtcaacc agctcaacaa aggagctgtg tctttcttca tttttgacaa ggagtggatg 1260 atgcacaacg caaaagttac aggaactgat ggtttttatg ccacagttct tagtaacact 1320 gagaagggct acagtggcgc cccctactgg aatgggaaat ctatagtagg ggtgcataaa 1380 gggcacgtgt acggagacga ttccaagaat tacaatctta tgtcgccgat tccccctgtc 1440 aaggggttaa cggcgcctaa ttttgtgtat gagtctccgt ctctgcaagg agatgtcttt 1500 agcgacgccg acgtttcaga cattgctgat tacgccgagg aggtgtatga gaaaaccctt 1560 gcagagccta aagtgtggaa acctgccagc ggcaaatact ggtgggaaat ggctgaagaa 1620 gaggatgatt ttgtcgttga ggcaaagtca cctccccctg ataaacctgt tgagaacgct 1680 acagcaaaag agcagactcc agctccgact gtcgagaaag ctatggttgc tgatcagccg 1740 actccagacc agggaaacga gccaagtggc gccgaccact taaaaacacc ggaatccacc 1800 ccgctcaagc aagacgaatc tacaaaagag ttgctcaaca acatcgtctc gcagttgatt 1860 caaaagatcg acctgagctc cattgcaacg agggtggagg agaaactgct gcatcaggcc 1920 cagaacaaac agcagcagaa cggagggaag aagtcgccca gaaaacgcaa gacctcgaac 1980 acttcttcca agccgcatac aaatggggag agtccaccag tgatatccca gggttcagga 2040 aatgcggcaa actccccgcg ctataccatc ccccaaaacc gaagagcaca caatgggggg 2100 agcgcatcat ctcagagcac ccagatatgg cgtccgaagt cgccggtttc gggtggcctt 2160 ccttcggcgc ccaagccgaa gagacaagtc tgagactcca agcggcacgc tggcttaaac 2220 gagctgagtc agcggaaaag ccgacagaaa aacaacgcaa gctcgtcatt gatcgtgtgg 2280 tcaaggcata tgaaccgtgt agaactaatg ccccacacac cagctcctct ggcagcctca 2340 tctggtccga cttcttgaaa gatttcaagg aggctgtcaa ctcactagaa ctcgatgcag 2400 gaataggtct cccatacaag cttcttcaca aagacactca tcgtcagatg gttgaagacc 2460 ccaaattcct gccgctcctg acgcgattga cctggaaccg tttacagaag atgtcccagg 2520 ttgacttcca ggagatgact cctgaacaac tagtgagaga aggattgtgc gatccgattc 2580 gtttgttcgt caaaggagaa ccgcacaagc aggcaaaact tgatgaaggg cgctaccgcc 2640 tcatcatgtc agtctcgctg gtagatcaac tggtagcccg ggttttgttt caggcacaaa 2700 acaaaagaga gatagctttg tggagagcta tcccttcaaa gcccggtttc ggcttatcca 2760 cagacaggga agcacgcgaa ttcattgaat ccctgtccaa gacagtaggg tgttccccag 2820 cagaagtcat tcatggctgg aggaacaaga tcgtacccac cgactgttcc ggttttgact 2880 ggtcagtcgc cgactggatg ctcgaagacg acattgaagt gagaaatctt ctcacaatca 2940 acaacaacga gctaacccgc cgcctcaggg cgtgctggtt gaagtgcatc acaaactctg 3000 tgatttgcac atccggcggt gtcttgtacg cccaaactca tcctggagtg caaaaatctg 3060 gatcttacaa cacgagttca tccaattcca ggattcgagt aatggccgct tttcattgcg 3120 gcgcagattg ggcgatagcc atgggagacg atgcacttga gtctccaaac tccaacatca 3180 acgcgtatca aaagttgggg ttcaaagtcg aggttgcctc acagctagaa ttttgctcac 3240 acgtctttga gcaggaggac ctcgccaggc cgttgaacgt aaacaaaatg ctttatcgtt 3300 tgatcttcgg atacaatccg gcctgtggca acgcggaggt attgtgcaat tacctccaag 3360 ctgtggcttc tgttctcaac gagcttcgcc atgatccaca gctagttgct accctccatg 3420 agtggctggt ccctggcgcc gccacaaaat aaatacggag gggcatcccg agccaccaca 3480 taggttgcaa gagtggaacg ggaagtccta tagataagcc gcgcgattct ggattataaa 3540 cttctagcgg gagttctcat cggtgttctc atcgcaatcc ccctagtgat catagcggct 3600 tacctgatat tcctcaaaat cagtgcacac atccgagcga tagtgaatga atacgggcgc 3660 taaccgctca cgaaggaatg tcagaagacg cgctaaccgt cgtagacaga ctcggccagt 3720 ggtcgtggtc cgggctcccc caggacctag acgagtacga cgacgtagag cacgtgttgg 3780 aggaaacgct gtgcgaggac cgggaggaag aagcaaccgg gatgttctca ctttcacggt 3840 tgacgatctc aaagccaact caaccgggat cctcaaattc ggaccgaact tatctcagta 3900 cgcagcgttc aacaatggct tactcaaagc ctaccatgag tataaaatca caagtctcac 3960 tattcagtat aactcatgct cctccgacgc aactccaggt gcaatcgcac ttgaagtgga 4020 tacatcctgc tcccaaacaa caacaggctc caagattact agcttccccg tcaagaggaa 4080 cgccaagaaa gtcttcccgg cccccttcat cagggggaaa gatttcatga ctacgtcagc 4140 tgaccagttt tggttgctgt acaaagggaa tggagactcg agcctagcag gacaattcgt 4200 ctgccgattt gaatgccttt tccagaatcc caaataggta gacgacgctc ccccaacacc 4260 caccccaaca ccaaccccac ccgctccgac cccggcaccg actcccaagt attttggata 4320 ccaaggagtg ccgaacaaca tcgtgaaaac aagaggaaac tctgaatatc tagatgtggg 4380 tccgctcgaa aatgtgacca tgtatctttg gaaagacgaa tcgtggagca ttgagcaact 4440 gtcagccgga tatcgcgtta acaatcgaga acgtgccata ccctttgtcc tctttccagt 4500 ggataaaggc aagtactccg tgtttataca atgtgagggc tttaaggcag ttaaagccaa 4560 aggaggcacg aacgacggca agatgagcgg gtttctttgt gacaatgcaa atctcgcggg 4620 ttggcgagca tacgcatata gtgggtgtac aatctctaat tatagaacat cggactctaa 4680 tgttcctggt catccggaca tgaaagtcaa tggtggatct tttaccgacc aattggtcga 4740 gagagatttt tcttgttcat ttcaccttga ggtgcctcaa caaggctatt ttggcctaga 4800 ggccccaccc attgaaaaga gtgatcattt caattttgtg gtgtcttacg ctaacttcac 4860 tgataaaatc ctggaatggg gttcaatctc cgtagcgata gacgaggtga atgacggagc 4920 gtatagtaga tcaaaatggg ataagactac tgcaatgagt gctcgtttgc cgattcaggt 4980 gagcgccccc tccgaggttt acaccccgga agcacctgag caaccgacta acgaagggac 5040 ggagagtatg cctccagccc cgaacccggc actgggaccg gacaacccag caaccaaaga 5100 acccacgccc aaaatcgtgg ataatccgga cccaaaggta ctcaactggc ttaacaacca 5160 gcgagataaa cctgtggtgg aagaggtttt gcgtgaatct ccgatttatg ctcctccacc 5220 ccccccgtct ctagttccga ctcatgccga caccttaaga caggcggata aggtccggag 5280 agctctcatg gctaacgctt cacgttcagc ctcacctccc cctacgaata ccgaaattcc 5340 tgttcttggg gccactgaca ctgcttcttt aagtggatca ttacgcggtg gctccctcag 5400 aggtaatttg ggttctcgcc cctctcttcc gagggtcgct gacagccctc cccgttctgt 5460 aagtccggct cgttccgaga ccagcactct acagggcggt tctctgagcg gtggttcttt 5520 gagaggtggc aacctccagg ctttgcctga ggccacaaga gagcaaagga gggaatacga 5580 acgtctcaag aattcacgag ggaagacggt agcaaaagcc catgcaaaag aacatggtta 5640 caagccaccg aaatcttcct cctccttgtt tggttgagtg tcgagccact ataacgctcc 5700 ccgccccggg acacgggact ccaatcatga gtttaaactg agctctttcc acgagcctaa 5760 actggagaac tccgcaaagt tctaaaacta tgtagatggg ctagcgaccc agctcttcca 5820 ttgattttca ggatctttgg aagcccaagc taaaggggtg gaatacaggg aggcactgc 5879 //