ID GU182411; SV 1; linear; genomic RNA; STD; VRL; 7671 BP. XX AC GU182411; XX DT 16-AUG-2010 (Rel. 105, Created) DT 21-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Turdivirus 3 strain 00742, complete genome. XX KW . XX OS Oscivirus A2 OC Viruses; Riboviria; Picornavirales; Picornaviridae; Oscivirus. XX RN [1] RP 1-7671 RX DOI; 10.1099/vir.0.021717-0. RX PUBMED; 20554801. RA Woo P.C., Lau S.K., Huang Y., Lam C.S., Poon R.W., Tsoi H.W., Lee P., RA Tse H., Chan A.S., Luk G., Chan K.H., Yuen K.Y.; RT "Comparative analysis of six genome sequences of three novel RT picornaviruses, turdiviruses 1, 2 and 3, in dead wild birds, and proposal RT of two novel genera, Orthoturdivirus and Paraturdivirus, in the family RT Picornaviridae"; RL J. Gen. Virol. 91(Pt 10):2433-2448(2010). XX RN [2] RP 1-7671 RA Woo P.C., Lau S.K., Huang Y., Lam C.S., Poon R.W., Tsoi H.W., Lee P., RA Tse H., Luk G., Dyrting K.C., Chan K.H., Yuen K.Y.; RT ; RL Submitted (07-NOV-2009) to the INSDC. RL Department of Microbiology, The University of Hong Kong, University RL Pathology Building, Queen Mary Hospital, Hong Kong, P.R.China XX DR MD5; bdbfe1fa5d999cb730be1eccc7b0b0d8. DR EuropePMC; PMC3264332; 22114340. DR RFAM; RF00164; s2m. XX FH Key Location/Qualifiers FH FT source 1..7671 FT /organism="Oscivirus A2" FT /host="Grey-backed Thrush" FT /strain="00742" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /collection_date="17-Jan-2007" FT /db_xref="taxon:871701" FT CDS 644..7420 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:D9YV29" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:D9YV29" FT /protein_id="ADL38962.1" FT /translation="MDSPRYTPEYHIFARRNAVKRTKINCSLPSNTKPFSGWYTKPAVP FT IASYRKTLNPLDPHLATGQGASYSVVIGDGNSLETNQGANGLTATVPVNSTFSGEVTAR FT APRNPPALPQPPPAHKEKKPKTTDGKKPWDFIKKLLPDPQNEVSLLQVDRISTVSAAGT FT AVAVQSDLPPVLAYEGKFEYPPLTGEEISTIDLLADRYFQLDSFQWGVATNQFYPLSGI FT NSVKYAAPDNTYSVWSLPESLIKATGKLAFTKAFQTNAYYRCGWEILMEVNGTFFHQGA FT IAVVAIPEAQTTAAFTGSLGRTLAYPHAILNIRTSNQARLLLPYASANRFYPTTGAVFK FT SDSALPGLGTLSYHQQWVLVVWVISPLQVLSNESNLTVNLLVRPLQAEFMGPHYAYGQP FT FVVREVVGSSGFANTQPMQEFNAINWSPVIPEPDWLAGEYRQMSQVAQIPTIDRLIRWY FT GGSSNPAGTILYQVPITTATLVENDSWLSFAMQFYTQWRGTVMAHLTFCGSRQQTGKLL FT VAFLPLGTESKLTLEELMSGTYTIWDIGLNSTLSFVIPFCSSTSWKSIGASSGLEFSQA FT LGMLYIAVYNPLVTPYGAPNAPVVLSWSGGVDFQLRQPTAPRLFGQGDDQITNIETAVP FT TEPLPAQMLLGNLDQSDLETLFAIYRPFWTGENFSQSRIVVDEDNPSNLVWYISLDPTD FT WAETSLFSQLVKSFTYIAGNLHVKLTVYNMSLYNPFTFSATYIPPGGNIMSSLPMSQNM FT PLVQIDMDGSCMREIPINIPQSCATEVIPTAYAGYSDLSRKTWGRLSGSGWGTLMVSIQ FT QRVIGSNKIRASWWMDARITNARAYMPRIVKAVSKASDEKRPFSLTVRSAGPLWTPSQV FT STSTVDYSDATGQGKLGDTPVHVWRKCWLWEGITSFAISDGNTHIVVDTTVHLGDLDGL FT TRIQQVPLVKFLQLHSLVGVTLVTTRAEFLDMLLDNEGYSAPTQIGVLDYPPSAQCTGQ FT GIIENTRIAAESVSYASMNLERVLTQEKLDRISEISKSFMLASENVHQAVEGINTALNA FT ITPILSTSPLIEVTEGLAGKIISWVIKFIGFIVIIASNFSLPTLLGVFMLISSDYITKI FT SFDLFKNSPFQCVCDWFCEKLGIEKKISVDPEIFHDPLEGPSGQGFKPKDFNDWANFFR FT NIDWAATRVIALITKLIEQIREARKEPEIGIFWYHDDIINLYSDSIKSLTLEDVDKTQL FT SINLNETRRLLSMALKAGNVGYQTLLKQALSNYTQSQASLQKTLFTTRPEPVVLYIYGG FT PGSGKSVLAGLLARAISKALTGKVDDIYAPSSFGTEHFDGYHQQTVHMIDDLGQAVDGS FT DWANFCNMVSTAPWAPPMAKLEEKGMFYTSKVVVVTANFNLPNYASAREPKALERRLHY FT KLFLGGQLNVDFACAPDGTPMRHFKSGCPLLRNSSGLLKDSGSILPCKFKDADDLVDLV FT VAEVRRRTGLLSMWDDLVGQGTDDSPTKPGFFRSVANTFAVAVGKNPPVESMEEVVRLH FT KRAAWLRAVFAGLGVVAGLLTMWGIMRSGNSGDQEPESEGPAVSQGPYSSIPHHFRKPT FT KPQERLKMDKAKYQGVPPIMRKVQDSVKWISFFSDGVPAGSCSAWNVVDRFFITVFHMW FT NRATSFKIGNVMYVKDDVKMTRIGEAVLFYLPNVPQGKNLLRFVKARSIKGVKAGFLAG FT NMDGVPNMVRVWELTTFRGIETQDGIFNEHCLGYRCASYAGLCGAPLVLEDPADYRIAG FT VHFAGYAGFSGFAVHFMKQEILDAMARISIPQSKLHDLGTLENPVHIPRKTVLKPSPAA FT GAYETTLQPAILSQRDGRLEAGLILDETIFEKHDKGDVTEPWKNLQEAFAIYFNQFQNK FT EIRTLSLHEAINGTPLLDGIDMNQSPGYPYITQGRSRRSLFTWNEEGFWEPTDELKLEV FT EKALENPSDFYYTTFLKDELRKNEKVHAGSTRVIEAAPLPVILAGRMLLGGLFEEMQSQ FT PGLYGSAVGCDPEVDWTRFFWEFERFPNVYDLDYKAFDSTVPTAAFKLLAVHLETLIGD FT SRVGKYIMSISSSKHIYTSKIYLMQGGMPSGCVGTSILNTICNNCFLLSALLEHPDFDL FT DSYYVIAYGDDVVYATNPPISPSFVKKFYDEHTPLKVTPADKGSTFNENSTIFDVTFLK FT RSFVPDPDKPWLIHPLIDPNVYEQSCMWVRDGEWQDTIDSLCQLAVHSGPKTYQTWVDT FT VRAKAKTRGVTPRFYPFEYLHRKWEHKLED" FT mat_peptide 644..835 FT /product="L" FT mat_peptide 836..1837 FT /product="VP0" FT mat_peptide 1838..2509 FT /product="VP3" FT mat_peptide 2510..3253 FT /product="VP1" FT mat_peptide 3254..3610 FT /product="2A" FT mat_peptide 3611..4096 FT /product="2B" FT mat_peptide 4097..5086 FT /product="2C" FT mat_peptide 5087..5338 FT /product="3A" FT mat_peptide 5339..5422 FT /product="3B" FT mat_peptide 5423..6007 FT /product="3C" FT mat_peptide 6008..7417 FT /product="3D" XX SQ Sequence 7671 BP; 1944 A; 1749 C; 1824 G; 2154 T; 0 other; gaaagggggc ccggcggggc aatacccgtc ggtccctctt tccgtccaag ccgcggacgt 60 taaattgtgg cacggttgtg cttaggcgca accctgctac taatggcggt atccctgccc 120 ttagtatgca tgtttgtatg aatggaatct gtagtgatgc cccgctttgg ggtctcagaa 180 acacactaca gtgacggcta gagttcctct actccggcta ccttagtagc gagcattgga 240 agtatattgt gaacagggtt ccacgcccga taaaggctga tattcccgct catggagtgg 300 acctaggtaa ctagggccat gagtgtgtgt gaatcagcac ccgcaaggga taacagtata 360 tggaaggtgc tcgtgaaacg gcaagtggag ttagcagcag ctctcagcct caaggtcagc 420 ttctagacat gtgccgcagg taccccgcaa gggatctgag cggtagctaa ttagtccctg 480 gaagttggct gactttcttc ttatttcttt cttattgtga attgtgtgca ttggcattct 540 ttagagtttg ggagttgtct tctattggat ttatatctta ctctgtatca cactcaatca 600 cggctctttg gtcagttaag aaaaccattt atagagtaat aaaatggact ctcctagata 660 tactcctgag taccacatct ttgctcgcag aaacgctgtt aagcggacta agattaattg 720 cagcttgcca tctaatacca aaccattttc cggctggtat acaaaacctg ctgtacctat 780 tgcatcttac cgcaaaaccc tcaacccctt ggatccccat ctcgctactg gccagggggc 840 gtcttattcg gtggtcattg gagatggtaa ctcgcttgag actaaccagg gtgcaaatgg 900 gcttactgcg acagttccgg tcaactcaac cttttcgggt gaggttactg ctagggctcc 960 tcgcaatcct ccagccctgc cccaaccgcc gccggcccat aaggagaaga aaccgaagac 1020 tactgatggg aagaagcctt gggactttat taagaaacta ctccctgacc cacagaatga 1080 ggtctctttg ctccaggttg atagaatttc tactgtctcc gctgctggta ctgctgttgc 1140 tgtgcaatct gatctaccac ctgtgcttgc ttatgaggga aaatttgagt acccaccact 1200 gactggtgaa gaaatttcta ctatagattt gctggcagat aggtattttc aattagattc 1260 tttccagtgg ggagtggcaa ccaaccagtt ctacccatta tcaggcatta attctgtcaa 1320 gtatgctgct cctgacaaca cctattccgt gtggtctctc ccagaaagct tgattaaagc 1380 aactggcaaa ttagccttta caaaggcctt tcaaaccaac gcctactaca ggtgtggctg 1440 ggaaatattg atggaagtca atggtacctt ctttcatcag ggggctatag ctgtggttgc 1500 aatcccagag gctcagacga ctgctgcgtt cactggcagt ctaggccgca cccttgcgta 1560 tccgcatgct atccttaaca ttagaacttc gaatcaagcc agattgctct tgccatatgc 1620 ttctgctaat cgcttctacc cgactactgg tgctgttttt aagagtgatt cagcgcttcc 1680 tgggcttggc accctctctt accatcagca atgggtgcta gttgtgtggg ttatttcacc 1740 actacaagtg ctgtcaaatg aatccaatct tactgtgaac ttgctggtcc gtcctctcca 1800 agctgaattt atgggtcccc actatgctta tggacaaccc tttgtcgtta gggaggttgt 1860 gggttcttct gggtttgcta atactcaacc tatgcaggag tttaatgcga taaattggtc 1920 tccagtcatt ccagagccag attggctggc tggtgaatac aggcagatgt cccaggtggc 1980 acaaatccct acaattgatc gcttgatccg gtggtatggt ggctcttcaa accctgctgg 2040 aacaattctc taccaagtac ccataactac tgcaactctg gtggaaaatg attcctggct 2100 ttcctttgca atgcagttct atacacaatg gaggggcacg gtgatggcac acctcacctt 2160 ctgtggatcc cgtcagcaga ctggcaaact tctggtagcc ttcctgccat tggggacaga 2220 gagtaagtta acacttgagg aactgatgtc tggtacttac accatttggg acatcggctt 2280 aaactcaact ctgtccttcg tgattccttt ctgcagctca acttcttgga aatccattgg 2340 tgcttcttca ggccttgaat tctcacaggc gcttggtatg ctgtatatag ctgtctacaa 2400 ccctctggta acaccatatg gggcacccaa tgctccagtg gttttgtcct ggtcgggcgg 2460 ggtagacttc cagctccggc agcccaccgc tccgcgcctc ttcggacagg gggatgacca 2520 gatcaccaat attgagacag cagtgcccac agaaccattg cctgctcaaa tgctcctggg 2580 aaaccttgac cagtctgacc tggaaactct ctttgccatt tatcggcctt tctggacagg 2640 agaaaatttc tcccagagta gaatagttgt agatgaagat aaccctagta atctagtatg 2700 gtacatttca cttgatccaa ctgattgggc agagaccagt ttattttctc aactggtcaa 2760 atcatttact tacattgctg ggaatctaca tgttaaatta actgtgtata atatgtctct 2820 ctataatcct ttcactttct ctgccactta catcccacct ggaggaaaca taatgtcctc 2880 cctccccatg tctcaaaata tgcccttagt acaaattgac atggatggca gctgcatgag 2940 ggagattcca atcaacatcc cacaatcctg tgcaactgag gtaattccta ctgcttatgc 3000 tggttattct gacctttctc gcaagacctg ggggcgcctt tcaggttcag ggtggggtac 3060 tcttatggtt agtatccagc aaagagtgat tggctcaaac aagataagag ccagttggtg 3120 gatggatgcc cgcattacaa atgcacgggc atatatgcct aggatagtga aagctgtcag 3180 caaggcttct gatgaaaaga gacccttctc tctcacagtc cgtagtgcag gaccactgtg 3240 gacacccagc caagtttcaa ccagcacagt agactattca gatgccactg gccagggaaa 3300 acttggtgat accccggtac atgtgtggag aaagtgctgg ctttgggagg gaatcacttc 3360 ttttgctatc tctgatggga acacacacat tgtggtggac accacagtgc acttgggtga 3420 cctggatggt ctgacgagga tacagcaggt tccccttgtg aaattcttgc agttgcactc 3480 tcttgtaggg gtgacccttg ttacaacaag agctgagttc ctggatatgt tattagataa 3540 tgaaggctac tccgccccaa cacagatagg agtccttgat taccctccca gtgcccagtg 3600 cacggggcag gggatcattg agaataccag aattgcagct gagtctgtta gttatgcttc 3660 catgaacctg gagagagtgc tgacacaaga gaagctggac cgcatttctg aaatttctaa 3720 atctttcatg ttggccagcg agaatgtcca ccaggcagtc gagggaatca acaccgccct 3780 caacgcaatt actcccatct tatccacctc cccgctgatt gaagtcactg aaggacttgc 3840 tgggaaaatc atctcctggg tgattaaatt tatagggttt atagtgatta ttgcctccaa 3900 tttttcccta cctaccctgc ttggagtttt catgttaata agttctgact acataacaaa 3960 gatttcattt gatctcttca agaattcccc attccagtgt gtgtgtgatt ggttttgtga 4020 aaaactgggc attgagaaaa agattagtgt tgatcccgag attttccacg atccgttgga 4080 ggggccctcg ggccagggtt tcaagccaaa agattttaat gactgggcca atttcttccg 4140 caacatcgat tgggcagcca ctcgagtcat agcactcata actaaattga ttgagcaaat 4200 ccgagaggct cgaaaagaac cagagattgg catattctgg tatcatgatg atatcataaa 4260 tttgtactct gactctatca agtcactgac tcttgaagat gttgacaaga cccagttgtc 4320 aattaacctg aatgaaaccc gcaggctcct gtctatggcc ctaaaagctg gcaatgtggg 4380 ctatcaaact ctgctgaagc aagctttgtc taattataca caatcacaag cctctttgca 4440 gaaaaccctc ttcaccactc gtcctgaacc cgtagttttg tatatctatg gtggtcctgg 4500 ctctggcaaa tctgtactgg ctggcttgct ggctcgcgca atttcaaaag cactgactgg 4560 gaaggttgat gatatctatg caccctcatc atttggaact gagcactttg atggctacca 4620 ccaacagaca gtccatatga ttgatgacct tggtcaggct gtggatgggt cagactgggc 4680 aaacttttgc aacatggtgt ctactgcacc gtgggcaccc ccaatggcaa agctggagga 4740 gaaaggtatg ttctatacta gtaaggtggt agttgtcaca gcaaatttca acctgcctaa 4800 ttatgcttct gccagagagc caaaagcact tgagagaaga ctgcactaca aactcttcct 4860 tggaggtcaa ttgaatgtag attttgcttg cgctcctgat ggcacaccta tgagacattt 4920 caaatctgga tgtccccttc tgaggaactc gtcaggattg ctgaaagatt ctggatctat 4980 tctgccctgt aagttcaagg atgctgatga tttagttgat ttggtggtgg ctgaggtgcg 5040 aaggcgcacc ggtttgcttt caatgtggga tgacctagtt ggtcaaggga cagatgactc 5100 cccaaccaaa cccggctttt tccgctcagt agctaatact tttgctgttg ctgtgggtaa 5160 gaaccccccg gtagaaagta tggaagaggt tgtaaggctt cacaaaaggg ctgcctggct 5220 gcgtgctgtt ttcgctgggc ttggtgtagt ggctggattg ttaactatgt ggggaatcat 5280 gaggagtggc aattctggtg atcaggaacc agaatctgaa gggccagcgg tctcccaggg 5340 accgtacagt tccatacctc atcactttag gaaaccaaca aaaccacaag agaggctgaa 5400 gatggataag gcaaagtacc agggagtccc tccaattatg agaaaagtgc aggattcagt 5460 gaagtggatt tctttctttt ctgatggtgt tccagcaggt tcttgtagtg cctggaatgt 5520 agtagatagg tttttcataa ctgtctttca catgtggaat agggctactt cttttaaaat 5580 tgggaatgtt atgtatgtta aggatgatgt gaagatgacc cgcattggtg aagctgttct 5640 cttttacttg cctaatgtgc cacaagggaa aaatctcctc aggttcgtca aggctcgctc 5700 aatcaaagga gtcaaggccg gctttctggc tggcaacatg gatggtgtac caaacatggt 5760 gcgagtgtgg gagttgacca catttcgtgg aattgagacc caggatggaa tcttcaacga 5820 gcactgcttg ggctatcgct gtgcctccta tgcaggattg tgtggagctc ctttggtcct 5880 ggaagatcct gctgactata gaattgctgg agttcatttt gctgggtatg ctggcttttc 5940 tggtttcgca gttcacttca tgaagcagga aatcctagat gcgatggctc gcatctctat 6000 tccacaatca aaattacatg atttaggcac cctggagaac cctgtccaca tcccccgcaa 6060 aacagtgctg aaaccttccc cagctgctgg tgcttatgaa accactctgc agcccgctat 6120 tctaagtcag agggacgggc gattggaagc tggactcatt ttggatgaaa ccatcttcga 6180 aaaacatgac aagggagatg ttacagagcc ctggaaaaat ctgcaggaag cttttgctat 6240 ttacttcaat caatttcaga ataaagagat taggaccctc tctctccatg aggcaattaa 6300 tgggactccc ctgttagatg ggattgatat gaaccagtct ccaggctatc catatataac 6360 acaggggcgg tcgaggcggt ccctgttcac ctggaatgag gaaggatttt gggagcccac 6420 ggatgagctg aagcttgaag ttgagaaggc gctggagaat ccatctgact tttactacac 6480 cactttccta aaagatgagc tgaggaaaaa tgagaaggta catgctggat ctacaagggt 6540 gattgaggcc gcccctttgc cagtcatact ggccgggcga atgctccttg gaggactttt 6600 cgaggagatg cagagccagc cgggtcttta tggttcggca gttggctgtg atccagaagt 6660 tgattggacc cgtttcttct gggagtttga aagatttcca aatgtgtatg acttagacta 6720 taaggctttt gattccacag tacctacagc tgcttttaaa ttgctggcgg tccatctaga 6780 gaccctaatt ggagactcca gggtaggtaa gtatataatg tctatttcta gcagtaaaca 6840 catttacacc agcaaaattt atcttatgca aggtggtatg ccatctgggt gcgtggggac 6900 ttctatcttg aacactattt gcaacaattg ctttttgctc tctgcattac ttgaacatcc 6960 tgattttgat ttggattctt attatgtgat agcatatggt gatgatgtgg tctatgcaac 7020 caacccccca attagcccaa gctttgtgaa gaaattctat gatgagcata ctcccctgaa 7080 agtcacaccc gctgacaagg gttcaacctt taatgaaaac tccacaatat ttgatgtgac 7140 ttttctaaaa agatcttttg ttccagaccc agacaaaccc tggttgatcc accccctcat 7200 cgatccgaac gtgtatgagc aatcatgcat gtgggtgcgc gatggagagt ggcaggatac 7260 aattgattca ttgtgccagt tggcagtcca ttcaggcccc aagacttatc aaacctgggt 7320 ggacacagtg cgtgccaagg ccaaaaccag gggggtcaca ccccgctttt acccatttga 7380 atatttacat aggaagtggg aacataagct agaggattag agtcataatg ttagtatatt 7440 ttattttagt gttagttatt gatttatttg ttaagttagt tttagtgtta atgttttagt 7500 tactaagtta ggctctaggt tagaaatatt gttagttgtt gtaagtttaa tataaaattt 7560 gcttgctaca atttggaact agtgctcccg cggccacgcc gagtaggatc gagggtacag 7620 gagcacccaa aagttttgct atttgcactg attggcaaaa aaaaaaaaaa a 7671 //