ID GU182409; SV 1; linear; genomic RNA; STD; VRL; 7640 BP. XX AC GU182409; XX DT 16-AUG-2010 (Rel. 105, Created) DT 21-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Turdivirus 2 strain 007167, complete genome. XX KW . XX OS Oscivirus A1 OC Viruses; Riboviria; Picornavirales; Picornaviridae; Oscivirus. XX RN [1] RP 1-7640 RX DOI; 10.1099/vir.0.021717-0. RX PUBMED; 20554801. RA Woo P.C., Lau S.K., Huang Y., Lam C.S., Poon R.W., Tsoi H.W., Lee P., RA Tse H., Chan A.S., Luk G., Chan K.H., Yuen K.Y.; RT "Comparative analysis of six genome sequences of three novel RT picornaviruses, turdiviruses 1, 2 and 3, in dead wild birds, and proposal RT of two novel genera, Orthoturdivirus and Paraturdivirus, in the family RT Picornaviridae"; RL J. Gen. Virol. 91(Pt 10):2433-2448(2010). XX RN [2] RP 1-7640 RA Woo P.C., Lau S.K., Huang Y., Lam C.S., Poon R.W., Tsoi H.W., Lee P., RA Tse H., Luk G., Dyrting K.C., Chan K.H., Yuen K.Y.; RT ; RL Submitted (07-NOV-2009) to the INSDC. RL Department of Microbiology, The University of Hong Kong, University RL Pathology Building, Queen Mary Hospital, Hong Kong, P.R.China XX DR MD5; 2624ce6600b86037be10c74fa725e971. DR EuropePMC; PMC3264332; 22114340. DR RFAM; RF00164; s2m. XX FH Key Location/Qualifiers FH FT source 1..7640 FT /organism="Oscivirus A1" FT /host="Oriental Magpie Robin" FT /strain="007167" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /collection_date="06-Sep-2007" FT /db_xref="taxon:871700" FT CDS 638..7405 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:D9YV27" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:D9YV27" FT /protein_id="ADL38960.1" FT /translation="MARACANTTPVRGWFSAPYFPIPSYAKMKNWFGFIEVTPRVDLAS FT SIKLACGQGASYSIVVGDGNNLETNQGANGLTATVPVNSTFSGEVVARSSRGSNPSPPA FT LNHKEKKPKEGRSTAWDFVKKLLPDPTNEVSLLDVDRISTISAAGTAIAVQQDIPPVFA FT YEGKFEYPELTGEEISTIDLLADRYFQIDSFTWGPALELFKPLSGSNSVKYTAPEAEIA FT VWSFPESLLKATSKLAFTKAFHTNAYYRCGWEFLLEVNGTVFHQGAIAMTAIPECASPG FT AFMSGIGRTLIYPHAILNLRTSNQARLIVPYASANRFDPTTGAEFSEDTPGMTVKSYHQ FT QWVLVIWVMAPLQILQGETQLIVNLLARPLEAQFMAPHYSYGQPFMVRNLVAPEGLATA FT QPGQEFNAVNWSPIVPEPKWLAGEYTHMSQIAQVPSCIGILRWSGGSAAGTGTIIYRAP FT ITTSNLVEMDTWLSFAMQFYTHWRGSILLNLTFCGSRQQSGKLLVSFLPLSTAGNLTLE FT ELMSGTYTVWDVGLNSTLSFVVPFCSQTAWKAIGSASGLEFSQALGVLYIAVYNPLVTP FT YGATTAPILVSWSAGSDFQLRQPAVPRLLAQSDDQITNLETGIATEFLPAQIPMGNLDQ FT SELSDLFAIYRPFWTGDDFSQSVITANTDEGDTYWMVSLDPTDWATSSLFSQLVKSFTY FT VNGNLHIKITVQSKSEVANFTLAVAYIPPGGPMGPDLKQALNFPLVQIDISNYTIKEIP FT INIPQSCVTEAIPTSYSGFADLTRGTWGRLSGSGWGTLVVAALPRGGKSLRMAWWMDAR FT ITQARVYMPRVIGRVGGLQSEKKSPFSLTTRSAGPLWKANQVVSKVVEFSDTPELLGQV FT RPGAAPTHLWREVWLYEGPLSFALSDGCEHIVVTNKVSPGDLDGLVRTQKVPLVKFLQL FT RSLIGVTLVTSRAEFLDMLLNIDGCSHQTQLGVLDFPPTGQCVGQGIIENTRIAAESVS FT YASMNLERALTQERLDKISEISKSFMLASENVHMAVDGVNAALSHLVPVISSCDEVKPL FT HGLAQSLVTWVVRIIGILVLLVSNFNLSTLTGVFLILSADFITKVTFEAFKDNPFQFIG FT KWISEKLDLGVDVDIEPILYVKEEEDPGEGPSGQAFKPKDFNDWANFFKNIDWAVTRLV FT VLIEKLIKQIQAAKANPEIGISWYHDDIINLYSDSIKSLSLEDVDKTQLSMNLGEVRRL FT LSMSLKAGNTGYQTLLKQALSNYTQAQNSLQRTIFAVRPEPVVVYIYGGPGSGKSVLAG FT LLARAISKALSGRADDIYAPSSFGTDHFDGYHQQTVHLIDDLGQAVDGSDWANFCNMVS FT SAPWAPPMAKLEEKGMYYTSKVIIVTANFNLPNYASAREPKALERRLHFKMFMGGSLNV FT DFACAPDGIPMRYFKSGCPLLRNSNGAIKESGSVLPCKFTDMDDVVDLVLTEVKKRSLG FT LTMFDDLVGQAASPEAQPSPPGFFRSVKNTFSVLVGRNPEACTLEEVQKLKKRANWLKA FT VFTGLGIIGALFAMWKAIKPSDSPAEPEADPEDSLEKIPESQGPYNTIPHMYRRPEKPS FT SRLKMEKAKYQGVPPILRKVQDSVKWTTFFSDSVPIGACSSWNVVDRFHLTVNHVWEKA FT TNFKIGNVMYSKEKISFTRIGEAVLFYLPNVPQGKNLLKFVKARTIRGVRAGFLAGNMD FT GVPNVVRVWEMTTFRGIETQDGIFNEHCLGYRCASYSGLCGAPLILEDPADYRIAGIHF FT AGYAGYSGFATHFNKQELVEAMAKISIPQSQIVEAGTLEKPVHIPRNSVLKPSPAAGAY FT PTVLEPAVLRRSDGRLLDGVVLDEAIFSKHDKGDTTEPWKNLPQAFSVYFNQFQNKEIR FT TLTLHEAINGTPLLDGIDMIHSPGYPYITQGVSRRSLFTWNPDGHWDPTPELAAEVERA FT LENPQEFIYTTFLKDELRKVEKVENGLTRVIEAAPLPVILAGRMLLGGLFEEMQSQPGK FT YGSAVGCDPDIDWTKFFWKFERFEHVYDMDYKAFDSTVPTAAFDLLSYHLERLIGDSRI FT SKYISSIASSRHVYGNKIYLMLGGMPSGCVGTSILNTICNNCFVLSALLEHKDFDINQY FT YIVAYGDDVVYATNPPISPTFIKNFYDRYTPLVVTPADKSDKFNEDSTIFDVTFLKRSF FT VPDPAKPWLIHPLIDPVVYEQSCMWVRDGDWQDTLDSLCQLAFHSGPKTYARWVETVRA FT KAHSRGVLPRFYPFDYLQKRWELKLES" FT mat_peptide 638..796 FT /product="L" FT mat_peptide 797..1786 FT /product="VP0" FT mat_peptide 1787..2458 FT /product="VP3" FT mat_peptide 2459..3196 FT /product="VP1" FT mat_peptide 3197..3562 FT /product="2A" FT mat_peptide 3563..4060 FT /product="2B" FT mat_peptide 4061..5050 FT /product="2C" FT mat_peptide 5051..5323 FT /product="3A" FT mat_peptide 5324..5407 FT /product="3B" FT mat_peptide 5408..5992 FT /product="3C" FT mat_peptide 5993..7402 FT /product="3D" XX SQ Sequence 7640 BP; 1828 A; 1779 C; 1780 G; 2253 T; 0 other; cctcggtccc tctttccgtc gccgcccacg acgttaaatg cggtgctgtg gtgcttaggt 60 gccacaccac tgcggtttgg gttccccttt cccctatata tgtttgtctg tttatttcaa 120 attcttgagg attggcacct ccttatgcca aatctaaatc gtggaggatc ccaggctttc 180 tggtctcaaa cagaactcca cgtccaggtc ataggaactg gttagtaggc tatttgagta 240 gtccgtttgt tagtaatgcc ttgtgaacag ggtggctccc gtttactgct ggtattcccg 300 gtgcaggttg ccgtggtggt gacaccatcc tgcattgtgt gtgaaccagt accgcaagga 360 tagcaaggta tgaacactta tgggtgaaat aataagtgac taatccactt tcatggccgg 420 aaggtcatgt ggcaatcatg ccacccaggt accctcttag gaggatctga gggtgggcta 480 agcagaccct gccatgtggc tgaaattttc tattatttta ttccataaca tttatagcta 540 tataggtgtt ttgtgtgttg tgctctcctt ttccgagtta tttccagtac tagttcgcag 600 ctagaagttt aactcttcga tatcggctac attggaaatg gctcgtgctt gtgcaaacac 660 tacccctgtt aggggatggt tctctgcccc ttatttccct attccctcct atgctaaaat 720 gaaaaattgg tttgggttca tagaagtgac tccccgagta gatttagcca gttctattaa 780 gttagcttgt ggacagggtg cttcttattc aattgttgtt ggtgatggga acaatttgga 840 aacaaatcag ggtgcaaatg gcttaactgc aacagtgcca gtaaattcaa ccttttctgg 900 ggaggttgtg gctcggagtt cacggggctc taatccctct cctcctgctc tgaatcacaa 960 ggagaagaaa cccaaagaag gtcgcagtac ggcctgggat tttgtgaaaa agctcctccc 1020 tgatcccaca aatgaggtct cacttctgga tgtagacaga atttcaacca tttctgcagc 1080 tggtacggcc atagcagtgc aacaggacat tcctcctgta tttgcctatg agggcaaatt 1140 tgagtatcct gaattgactg gcgaggagat ttctaccatc gatctcctag ccgatcgcta 1200 tttccagatt gactccttca cgtggggtcc agcattagag ctttttaaac ctctctctgg 1260 ttcaaactcg gtcaaataca ctgctcctga ggccgaaatt gctgtctggt ctttcccgga 1320 aagtctccta aaagccactt ctaagctggc ctttacgaag gcattccaca ccaatgctta 1380 ctatcggtgt ggctgggagt tcttactaga agttaatggc actgtcttcc atcaaggtgc 1440 tatagcaatg actgccatcc cagaatgtgc atcccctggc gccttcatgt ctggaatagg 1500 cagaacttta atttatcctc atgctattct taatctgagg acttcaaacc aggcccgcct 1560 gatagttccc tatgcttcag ctaaccgctt tgaccctaca actggtgcag aattttctga 1620 agacacccct ggaatgactg tcaaatccta ccatcaacaa tgggttcttg tgatctgggt 1680 catggccccc ttgcaaatat tgcaaggaga aacacagctg attgtgaatc tactggcccg 1740 cccgctggaa gcccagttta tggcaccaca ttactcatac ggacagcctt tcatggtccg 1800 taatttggtt gccccagaag gattggccac agcccaaccc ggtcaagaat tcaatgctgt 1860 taactggtcc ccaattgtcc ctgagccaaa gtggcttgct ggtgaataca cccatatgtc 1920 ccagattgcc caagtcccga gctgcatagg catcctgcgt tggagtggag gatctgctgc 1980 tggcactggc acaattattt atagagcccc tatcactact tctaacttgg tggagatgga 2040 tacctggctt tcttttgcta tgcagtttta cacacactgg agagggtcca ttcttttaaa 2100 cctgaccttc tgtggctccc ggcaacagag tggcaagttg ttagtatcct ttttacccct 2160 ctcaactgct ggaaacctaa ccctggagga attgatgtct ggcacctaca cagtgtggga 2220 cgtcggactc aattctaccc tgagtttcgt cgtgccattt tgcagccaga ctgcctggaa 2280 agctattggc tcagcttcag gcttagagtt ttcccaagca ctaggtgtat tgtatatagc 2340 tgtgtataac cctctggtaa ccccatatgg agcaaccact gctccgatcc tggtttcctg 2400 gtctgctggt tctgactttc agctacgaca accagcggtc ccccgcctcc tggcgcagtc 2460 tgatgaccag atcacaaatc tggaaactgg aattgcgaca gaatttctcc cagcccaaat 2520 tcctatgggc aatcttgatc aatctgaact atctgattta tttgctatct acaggccctt 2580 ctggactggt gacgacttct ctcaatctgt catcaccgcg aacaccgacg agggagatac 2640 ctactggatg gtgtccctgg atccaactga ctgggcgacc agctccctct tctctcagct 2700 ggtcaagtct ttcacttatg tgaatggtaa tctgcacatc aagattacgg tccagtcaaa 2760 gtcggaagtg gccaatttca cccttgctgt cgcttacata ccccctggag gccctatggg 2820 tccagacttg aagcaggccc taaacttccc tctcgttcag attgatattt ccaattatac 2880 tatcaaagaa atccccataa atattcctca atcctgtgtg actgaagcaa tcccgaccag 2940 ttattctggt tttgctgatc tcactcgtgg gacctggggt cgcctttctg gctccgggtg 3000 gggtaccctg gtggtggctg ctttaccccg tggtggcaaa tccctgagga tggcctggtg 3060 gatggacgcg cgcattacgc aagctcgcgt ttacatgccc cgagttattg gtcgcgtggg 3120 cggcctacag agcgagaaaa agtcaccctt ctcgctgaca actcgatccg ccgggccttt 3180 gtggaaggca aatcaagtgg tctctaaagt tgtagagttt tctgacaccc ctgaactcct 3240 tggacaggta cgtccaggcg ccgctcccac acatttgtgg agagaggtgt ggctatatga 3300 agggcccctt tcttttgcct tatctgatgg ttgtgaacac attgttgtca caaataaagt 3360 ttcccctggt gatctggatg gcttggtcag aacccagaaa gttcccctgg tgaagttcct 3420 gcagttacgc tctcttattg gtgtgacctt ggtgacctcc cgtgctgagt tcctggatat 3480 gctattgaat attgatggtt gctcccatca aacacagtta ggagtccttg attttccacc 3540 aaccgggcag tgtgttggtc agggtatcat tgagaacacg agaattgcag ctgagtcggt 3600 cagttatgct tcaatgaacc ttgagagagc gttgacccag gaacggttag ataagatttc 3660 tgagattagt aagagcttta tgctggctag tgaaaatgtg catatggctg tggatggtgt 3720 gaatgctgct ttatcccact tagtacctgt catttctagc tgtgatgagg tcaagccact 3780 tcatggtttg gcacaatcat tagtaacctg ggttgttagg attataggga ttttagtgct 3840 tttagtgtcc aactttaacc tgtccacttt aacaggagtg tttttaattt tgagtgcaga 3900 ttttatcact aaagtgactt ttgaagcctt caaggacaat cccttccaat tcattggcaa 3960 gtggatcagt gagaaacttg acctgggagt tgacgtagac atcgagccga ttctctacgt 4020 caaggaagaa gaagacccag gggaagggcc tagtgggcag gccttcaagc caaaggattt 4080 taatgattgg gccaattttt tcaaaaatat tgattgggct gtaaccagat tggtagtttt 4140 aattgagaaa ttaattaaac aaattcaggc tgcaaaagca aatccagaaa ttggcatttc 4200 ctggtatcat gatgatataa taaatctgta ctctgattcc ataaagtctc tgtccctgga 4260 agatgttgac aagacccagt tgtccatgaa cctgggagag gttcgtcgcc ttctttcaat 4320 gtcactgaaa gctggtaata ctgggtacca gacccttctg aaacaggccc tcagtaatta 4380 cacccaagca caaaattctt tgcagcgcac tatttttgct gtacgcccag aacccgttgt 4440 tgtttacatc tatggtggcc cgggatctgg caaatctgtc ttagctggcc tcttagcgcg 4500 ggccatttcc aaagctcttt ccggccgcgc tgatgacatc tatgccccct cctcctttgg 4560 tacggaccat tttgatggtt accaccagca aactgtgcac ctgattgatg accttgggca 4620 agcagttgat ggttctgatt gggcaaactt ttgtaacatg gtttcctctg ctccatgggc 4680 tccacctatg gccaagcttg aagagaaagg tatgtattat accagcaagg tgatcattgt 4740 tactgcaaat ttcaatcttc caaactatgc ttctgctcgc gaacccaagg ccctggagcg 4800 ccggcttcat tttaagatgt ttatgggtgg ttccctcaat gtggactttg cctgtgcccc 4860 tgacggcatt ccaatgcgct atttcaaatc tggctgtccc ttgctgcgca attctaatgg 4920 tgcaataaaa gaatcaggtt ctgtgcttcc ctgcaaattt actgacatgg atgatgtagt 4980 agatttagtg ttgacagagg tgaagaaaag gtccctgggt ctgacaatgt ttgatgattt 5040 ggtaggtcag gccgcctccc cagaagctca accttcccca cctggatttt tccgtagtgt 5100 caaaaataca ttttctgttc ttgtgggccg taatccagag gcctgcaccc ttgaagaagt 5160 gcagaaattg aaaaagagag ccaattggct gaaggctgtc tttactggac ttggcataat 5220 tggggcttta tttgctatgt ggaaagccat aaaaccctct gattccccag ctgaacctga 5280 ggctgacccg gaagactccc ttgagaaaat tcctgaatcc cagggccctt ataacaccat 5340 tccccacatg taccgccgtc cagagaaacc ctcttcccgc ttgaagatgg agaaggctaa 5400 atatcagggt gttcccccaa tactcagaaa ggtccaagat tcagttaagt ggaccacttt 5460 ctttagtgat tcagttccca ttggtgcctg tagctcctgg aacgtggtag accgttttca 5520 cctgactgtt aaccacgtct gggaaaaagc aacaaatttc aaaattggca atgttatgta 5580 ttcaaaggag aaaatttcat ttacccgcat tggtgaggct gtgcttttct atcttccaaa 5640 cgtcccccaa gggaagaacc tcctgaagtt tgtgaaagcc cgcactattc gtggtgttag 5700 ggctggattc cttgctggaa acatggatgg tgttcctaac gtcgtccgtg tgtgggagat 5760 gaccaccttc cgggggatcg aaacccagga tggtattttc aatgagcatt gcctgggcta 5820 tcgctgtgct tcttactctg gtctttgtgg tgcccccctg attctggaag acccggctga 5880 ttaccgcatt gccgggattc attttgctgg ttatgctggc tattcaggat ttgccaccca 5940 cttcaacaaa caggagcttg tagaggctat ggctaaaatt tcaatccccc agagtcaaat 6000 tgtggaggct ggaactttag agaaacctgt gcatattccc cgcaattctg ttctgaaacc 6060 ttccccagct gctggtgctt atcccactgt tctggaacct gctgtgttac gcaggagtga 6120 tggacggttg ttagatggtg tagtgttgga tgaagctata ttttctaagc atgataaagg 6180 tgatacaact gaaccctgga agaacttacc ccaagctttt tctgtgtatt tcaatcaatt 6240 tcagaataag gagattagga ctttgaccct gcatgaggca ataaacggaa cccccctgct 6300 ggatggaata gacatgattc attccccagg ttacccttat attacccagg gtgtgtcccg 6360 cagatccctt tttacttgga atcccgatgg acattgggat cccacccctg agcttgctgc 6420 tgaagttgag agagctttgg agaatcccca agagtttatt tacaccactt ttcttaaaga 6480 tgaattgagg aaggtcgaaa aggttgagaa tggattgacc cgtgttattg aggctgcccc 6540 ccttccagtg attttggctg ggcgcatgct cctcggtggc ctttttgagg agatgcagtc 6600 gcaacctggt aagtatggct ctgctgttgg atgtgaccct gacattgatt ggaccaagtt 6660 tttctggaag tttgagaggt ttgagcatgt gtatgatatg gattacaagg cttttgattc 6720 cacagttccc actgctgctt ttgacctcct gtcctaccac cttgagcggc tgattggaga 6780 ctcccgcatt agtaagtata tttctagcat tgcttcctcc cgccatgtgt atggaaacaa 6840 gatttacctg atgctaggtg gcatgccatc tggctgtgta ggcacttcaa tcctgaatac 6900 aatttgtaat aattgttttg tgctttctgc ccttttagag cataaggatt ttgacataaa 6960 tcagtattat attgtagctt atggtgatga tgtggtttat gctactaacc cccctatttc 7020 tccaactttt attaagaatt tttatgatag gtatacccct ttggttgtta ctcctgctga 7080 taagtcagac aagtttaatg aagattccac catttttgat gttacctttc taaaaagatc 7140 ctttgtacct gacccagcta aaccctggct tatacaccct ttgattgacc ctgtagttta 7200 tgagcagtcc tgcatgtggg tgagggatgg tgattggcag gatacactag attccctgtg 7260 ccaattggca ttccactctg ggcccaaaac atatgcccgg tgggtggaaa cagtgcgtgc 7320 caaggcacac tcccgcggtg tactaccccg cttttacccc tttgattatt tgcagaagag 7380 gtgggagtta aaattagagt cttagatatg tagtagtagt agaatattta gttaagttta 7440 gtgttagtat tttgtttatt tactttgttt aagatttagg tagtatttaa gatttaggtt 7500 aagttaagtt taatttggaa attttgcttt gcttaatttg gaaattaaaa cagacccgag 7560 gccacgccga gtaggatcga gggtacaggt ctgttccaaa gatttgctga atgcactgat 7620 tggcaaaaaa aaaaaaaaaa 7640 //