ID GU182406; SV 1; linear; genomic RNA; STD; VRL; 8035 BP. XX AC GU182406; XX DT 16-AUG-2010 (Rel. 105, Created) DT 21-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Turdivirus 1 strain 00356, complete genome. XX KW . XX OS Passerivirus A1 OC Viruses; Riboviria; Picornavirales; Picornaviridae; Passerivirus. XX RN [1] RP 1-8035 RX DOI; 10.1099/vir.0.021717-0. RX PUBMED; 20554801. RA Woo P.C., Lau S.K., Huang Y., Lam C.S., Poon R.W., Tsoi H.W., Lee P., RA Tse H., Chan A.S., Luk G., Chan K.H., Yuen K.Y.; RT "Comparative analysis of six genome sequences of three novel RT picornaviruses, turdiviruses 1, 2 and 3, in dead wild birds, and proposal RT of two novel genera, Orthoturdivirus and Paraturdivirus, in the family RT Picornaviridae"; RL J. Gen. Virol. 91(Pt 10):2433-2448(2010). XX RN [2] RP 1-8035 RA Woo P.C., Lau S.K., Huang Y., Lam C.S., Poon R.W., Tsoi H.W., Lee P., RA Tse H., Luk G., Dyrting K.C., Chan K.H., Yuen K.Y.; RT ; RL Submitted (07-NOV-2009) to the INSDC. RL Department of Microbiology, The University of Hong Kong, University RL Pathology Building, Queen Mary Hospital, Hong Kong, P.R.China XX DR MD5; fb232b9cc288c3a998d8478b4bceb45e. DR EuropePMC; PMC3165794; 21697464. DR EuropePMC; PMC3255865; 22031936. DR EuropePMC; PMC3541788; 22875254. DR EuropePMC; PMC4403396; 25631076. DR EuropePMC; PMC4635496; 26018961. XX FH Key Location/Qualifiers FH FT source 1..8035 FT /organism="Passerivirus A1" FT /host="Pale Thrush" FT /strain="00356" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /collection_date="11-Jan-2007" FT /db_xref="taxon:871699" FT CDS 416..7702 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:D9YV24" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:D9YV24" FT /protein_id="ADL38957.1" FT /translation="MAHRSRPFPADPKTETQILNHLHFAITTLHRDPNYTPPCTTRLPV FT RIHKAAWAFHAFGYRCTLVGFEPSTPWTLKEVKQVLPETLFQEECHAFPLPSPTIQGFT FT YLTPDPIFADVLRRVRSGDFTVFQSDNAKVSGVDDDYTLIYSFGPHTARYTIPRSRPWL FT TSMEFVPSKQGQTITNIYGDGNWVTSSTGANGWSPSVNTNLADGTITSTNTGSPAPQNP FT NGPSNSSRPNKPRMSTLGRVNDQLAQERIRTLRAGSIGMDIPSQAPITQPLDIPPRADV FT SYLGEPFRPGPQVDRFWEVSHAKWNLSDTGLLTWDTSALQSTLAAPCTKHANFGSGTHL FT NFPYSILNSQPGTAISNAFSTHSYWRGDALIQVTVNSSPQASGVLLVAAIPEGVDVLTP FT QSATHYPFTLLNLATTNCCALLLPFLSPNPVDPCGLHFQWNVVALPITPLRVPAGTPSF FT LDVSCMMAPQDSEFFAMKTPAQQGVKVRETSATGNAYVTSCSAGTSIPALPYIPSNPPT FT TYVPGRTTNYMGLANQPGLMALVDIGMDSPVGTKLLCQKIDPISLTTPISGTLTPLGQT FT LTHFSQWRGTLDIDLVFSGSQQNTGRILVSTTPPVAGCPATMEAAMRNTCYIWDLTTSA FT SISITIPYFSSTPWKTLSRSTSLSLSVNQLAGWLGLYVYSPLSCPAFNPDQATIAVFIR FT GGADFEARIPSGLATATIQGDEEVPASSNDGLNTLELRPSSDGPESMSVAAYYSSFSPI FT SLYSTPSSQRNPSIPITSYPYALPLDPTHLIAGGTSNYVCPSLSTLLFREFTYLSADLE FT IDIVFTPGGDSDLPRDVDVYVIPPGCTIPANPNPVTLSGFPSAGWREMTEDRAHVTLSV FT PFSAENPVIASRYLGFPSYESSQSLATSLYSFGTLLITSPYFQNPLGTAYAEISLRFVN FT LQAFLPRPLSFNTLPDTQTYTAPAYVAARRQAGGILRTSPEPCFVIRNQRLTYVHWALR FT SGNKQVSIQRSGLGGLTPVIGYEDLEGEVYAEVPPHIFALAEAQVGSEYPYSATNNCTT FT WVETLTNLSLPNTGNSLALGLGAIGVGAAAALAVKTAEAKKQGLSEVSRNANATAESLQ FT RAAHIAHDAVSKAEKIASSVSLPSSTDALRAAAADMKVAANLIAGSIKDAGDIVDRVSP FT VIDSLASTADNAVQGFLKILAKLIGYIMILFGSPTPLSVAGLLVVIASDFAPAVVQYFK FT NVGNPLAALYYWIARKLGLESVTAKDAVDAAPTLSQLSSEPTPVQTPPQPTRQGVKEYN FT DGVNALKNTEWLIKKIFEYIKDLLEWLGVRAKSEPSAQLAQSHDTIMALFQDSISATSA FT PSLDLPAARSNLAKAQSLLPLATAAKSNTHSHILTQSIKNYTNAIASQEALLAPPRPEP FT YVLYLYGKPGSGKSVFAQALARTLAYHLCGDPESVYAPSSSDCAYYDGYAQQCVHYIDD FT VGQDPEGKDWKDFAQLVSTSPFIVPMASLEKKGMLYNSKVIILTSNFSEPNPRASRIPQ FT ALQRRLKCMIEIEPLSCPTQSNLHTLSSLPNQFNPETALRVDGPATRYFANDCPMLRFE FT AFRLTSNHGFKHADDIVRHVLDKVKNSGGISNALAALIPGVKPLARQQAGDEVPISKAP FT TCFTNPSYIPGSTEDLSWDPTDIQSSVPTPEVVAVKSNDIGLLKKIWKYKKPLIATATF FT LSILASVTVLFTSLYTTFRSRSQPQGAYAGMPLVREGTVYHGAYSGLPLSSAPASTRPK FT ASPRPLRQGLQECDIALSRNVVTVTSYDETSGKMLQLNGLALFDRWVATVTHIKLDRPM FT TVDINGCSYPVTRHVVHGEIAAVYAPKMPQVRDIRRFIRAPRMHHVGTVIANSTSGPVF FT MLANNVKHGDTPYPDLTGLTQVYTYDTPSYDGLCGAPLILHHPASPTVVGIHEAGVAGV FT SGVAIPLLPLLEKIPLPTQQSVITPLPMPGPGVHIPRRSRLRPSPAMGAFPVEKIPAAL FT SSHDKRLPEGVDVDTVAFSKQNRGDLDKPWPTLPVAVDLYFSQCDFPKLRMLSMDEAIN FT GTPLLDGLDMKQSAGYPWSLTTNRRSLFTQDPETGKYKPVPELEEAVLACLENPDYFYT FT TMLKDELRPTEKALAGKTRLIEAAPIHAIIAGRMLLGGLFEHMHARPGQYGSAVGCDPD FT YHWTPFFHSFDRFAEVWALDYSCFDSTLPSCAFDLIAAKLSQIITPLPGIAEDAIVKYI FT RSISVSKHVFGDRAYLMTGGNPSGCVGTSILNSMINNSVLISAFLTHPQFNPAEMRILT FT YGDDVLYATTPTIHPSFVKSFFDQNTTLIVTPATKAGDFPDHSTIWDVTFLKRWFVPDE FT ERPWYIHPVIEPATYEQSVMWTRGGDFQDVVTSLSFLAHHAGPTNYDAWATKVREQAAR FT KGLLPNILPYSYLHHRWLQLVVS" FT mat_peptide 416..934 FT /product="L" FT mat_peptide 935..1858 FT /product="VP0" FT mat_peptide 1859..2554 FT /product="VP3" FT mat_peptide 2555..3298 FT /product="VP1" FT mat_peptide 3299..3685 FT /product="2A" FT mat_peptide 3686..4249 FT /product="2B" FT mat_peptide 4250..5296 FT /product="2C" FT mat_peptide 5297..5581 FT /product="3A" FT mat_peptide 5582..5707 FT /product="3B" FT mat_peptide 5708..6274 FT /product="3C" FT mat_peptide 6275..7699 FT /product="3D" XX SQ Sequence 8035 BP; 1592 A; 2987 C; 1667 G; 1789 T; 0 other; tcctcaccca tgcttttcct acccccacca cgcccgcatg tttactgctt tccttgatgc 60 tgcccgtgac tacttccatg acctccccaa cccaaacctc aaacgcctta agctatcatg 120 ggctctctat caccaatccc cttccttccc acccagaacc cccccctccc tcccctacaa 180 cgtgtatgag caagacgagt ttgacaagct cgccgaagcc atgctcaccc actctccctt 240 ccccacatcc cattacctct tccaccccct cccgtccaac gcccgcacca tcgtcgagcg 300 tgaggctgac tgggatggct gtgatctaga aaagaaatgg ctcgacctcg tcatagagga 360 cgatgccaag ttccttctgg agaacggctc tctcccgttt ggctccaccc ttgccatggc 420 gcaccgctcc cgcccctttc ctgctgaccc caaaaccgaa acccaaatcc taaaccatct 480 ccactttgct atcaccactc tccaccgtga ccccaactac acccccccct gcacaacccg 540 cctccccgtc cgcattcaca aagctgcctg ggccttccac gcgttcggct accgctgcac 600 gctggttggt tttgaaccct ccactccgtg gactctcaaa gaagtgaaac aggttctacc 660 tgagacactt ttccaggaag aatgccatgc tttccccctc ccaagcccca ccatccaagg 720 cttcacctac ctcactcccg accctatctt cgctgatgtc ctacgccgcg tccgaagtgg 780 ggacttcaca gtcttccaat cggacaacgc taaggtttcc ggcgtcgatg atgactacac 840 cctcatctac tcctttggcc cccacaccgc ccgctacacc atcccccgct cccgtccctg 900 gctcacctcc atggaatttg tcccttccaa acaggggcag accatcacca acatctatgg 960 agatgggaac tgggtaacct cctccacagg agcgaatggc tggtcgccgt cggtcaacac 1020 caacctggct gacggaacca tcacatccac taacactgga tcgccagccc cccagaatcc 1080 caatgggcct tccaactcct cccgccccaa caaaccccgt atgtccaccc ttggtcgtgt 1140 caacgatcag ctcgcccaag agcgcatccg cactcttcgg gccggctcca ttggcatgga 1200 catcccctcc caagccccca tcacccaacc cctagacatc cctccccgcg ccgacgtctc 1260 ctacctcggc gagccgttca gacctggccc ccaggtcgac cgcttctggg aggtttcaca 1320 cgccaagtgg aatctctcag acaccggctt gctgacgtgg gacacgtccg ccctccagtc 1380 caccctagcc gccccctgca ccaaacatgc taactttggc tctggaaccc acctcaactt 1440 cccttactcc atcctcaatt cccaacctgg cactgctatc tccaacgctt tcagcaccca 1500 ttcctattgg cgcggagacg ccctcattca ggttaccgtc aacagttcac cacaagccag 1560 tggtgtgctg cttgttgctg caatacctga aggcgtcgat gtgttgaccc ctcaatccgc 1620 aacccactac cccttcaccc tgctgaacct cgctaccacc aattgctgtg cccttctcct 1680 tcccttcctg tcccctaatc ccgtggaccc ctgcggcctc cactttcagt ggaacgtcgt 1740 agccctcccc atcacccccc ttcgcgtccc tgccggaacc ccctctttcc tggacgtctc 1800 gtgcatgatg gctcctcagg actctgagtt ctttgcgatg aagacccctg cccaacaagg 1860 tgtcaaagtc cgcgaaacct cagctactgg gaacgcctat gtcacgagct gctccgccgg 1920 cacctccatc cccgctctcc cctacattcc ttccaacccc cccaccacct acgtccctgg 1980 cagaaccacg aactatatgg gcctggcaaa ccagccaggt ctaatggctc ttgtggatat 2040 tggcatggac tcccctgtgg gaaccaagct actctgtcag aaaattgacc ccatctctct 2100 caccaccccg atctctggga ccctaacccc cctaggccaa acccttaccc acttctccca 2160 atggcgagga accctggata ttgatctggt cttctccgga tcacagcaga acactggccg 2220 catcctggtg tccaccacac ctccagtggc tggatgcccc gcgaccatgg aagctgctat 2280 gcgcaacacc tgctacatct gggacctcac cacctccgcc tccatctcca tcaccatccc 2340 ctacttttcc tccaccccat ggaaaaccct ctcccgctcc acttccctat ccctctcggt 2400 caaccagctg gctggttggc tggggctcta tgtctactcc cccctttcct gccctgcttt 2460 caaccctgat caggcaacca ttgccgtgtt catccgcggt ggtgccgatt tcgaggccag 2520 aattccgtct ggtctcgcga ccgccaccat ccagggtgat gaggaggtcc ccgcctcctc 2580 aaacgacggt ctgaacacct tggagctcag accttcaagt gacggacccg agtccatgtc 2640 agtggctgcc tactactcat ccttctctcc aatctctctc tactctaccc cttcctccca 2700 acgcaatcca tccattccca tcacgtccta cccctacgcc cttcccctgg accccaccca 2760 cctcatagca ggaggcacct ccaattatgt gtgcccttcc ctctctactc tcctcttccg 2820 cgaatttacg tacttgtctg ctgatctgga aatcgacatc gtcttcactc caggaggcga 2880 tagcgatctt cccagagatg ttgatgtgta tgtgattccc cctggctgca ccatccccgc 2940 caaccccaac cctgtcaccc tctccggctt cccctccgct ggctggaggg aaatgacgga 3000 ggatcgtgct cacgtcaccc tctccgttcc cttctctgct gaaaatcccg tgattgcctc 3060 ccgctatcta ggtttcccct cttacgaatc atcccaatcc cttgccactt ccctctactc 3120 ctttggcacc cttctaatca cctctcccta tttccaaaac cccttaggta ctgcatatgc 3180 tgaaatctcc ctccgctttg tcaacctaca ggccttcctc ccccgccccc tttccttcaa 3240 caccctccct gatacccaaa cctacactgc cccagcctat gttgccgcaa ggcgacaggc 3300 tggtgggatc ctgcgcactt cacctgaacc gtgcttcgtt atccgcaacc agcggctaac 3360 gtatgtacac tgggccctcc gctccggaaa caagcaggtc tcaatccaga gatctggctt 3420 gggcgggctt acgcccgtca tcggctatga ggacctagaa ggtgaggtct acgcagaggt 3480 cccccctcac atcttcgccc tggctgaagc gcaagttgga agcgagtacc cctactccgc 3540 aaccaacaac tgcaccacct gggtggagac cctgaccaac ctctccctcc ccaacaccgg 3600 caattcgctt gccctcggat tgggcgccat cggcgtggga gccgctgctg ccttagccgt 3660 gaaaacagct gaggctaaga aacaaggctt gtctgaggtt tcgcgtaatg cgaacgccac 3720 agccgagtct ttgcagcgag ccgctcacat cgcccatgac gccgtctcca aggccgagaa 3780 aattgcttcc tctgtctccc tcccctcctc cactgatgct ctccgggctg ccgccgcaga 3840 catgaaagtg gccgcgaact tgatcgccgg gtcgattaag gacgccgggg atatcgttga 3900 ccgcgtgtcg cctgtgattg actcactggc ttcaaccgcg gacaatgctg tccaaggctt 3960 cctgaaaatc ctggccaagc tgatcggcta tataatgatc ctgttcggta gccccacccc 4020 tctctccgtt gccggtctcc ttgtcgtgat cgcctccgac tttgctcctg ccgtagtcca 4080 gtatttcaag aacgtcggga atccactcgc cgctctctac tactggattg cacgcaagct 4140 aggtctggaa agcgtgaccg ccaaggacgc cgtcgatgct gccccaaccc tctcccagct 4200 ttcctctgaa cccacccccg tccaaacccc accccagccc acccgacaag gcgtgaagga 4260 gtacaacgac ggagtgaacg ctctcaagaa tactgaatgg ctaatcaaaa agatctttga 4320 atacatcaag gacctgcttg aatggctcgg tgttcgcgct aagagtgaac cctccgccca 4380 actggcccag agtcacgaca ccatcatggc tctgttccag gactccatct ccgccacctc 4440 ggccccctcc ctggaccttc ctgctgcccg ttccaacctc gccaaagccc aatccctgct 4500 tcccctggcc accgcagcaa aatccaacac ccactcccac atcctcaccc aatcaatcaa 4560 gaattacact aatgcaattg cctctcaaga agccctcctg gccccaccac gccccgaacc 4620 ctatgtcctc tacctctatg gcaagcctgg ctccggtaag tctgtgttcg cacaggctct 4680 ggcccgcaca ctggcctatc acctctgtgg tgatcccgag tctgtctacg ccccctcctc 4740 gagcgactgc gcctactatg atggatacgc gcagcaatgc gtgcattaca tcgatgatgt 4800 aggccaagac cccgagggga aggactggaa agactttgcc cagcttgtct ccacctcccc 4860 tttcatcgtc cctatggctt ctcttgagaa gaaaggaatg ctttataatt caaaagtgat 4920 cattctcacc tccaacttct ctgagcccaa ccctcgcgct tcccgcatcc cccaagccct 4980 gcaacgccgc ttgaaatgca tgattgaaat tgaacccctc tcctgcccca cccaatccaa 5040 cctccacacc ctctcctccc tccccaacca attcaaccca gaaaccgccc tccgtgttga 5100 tggccccgca actcgttact ttgccaacga ctgccccatg ctccggttcg aagcgtttcg 5160 cctgacgtca aaccatggct tcaagcacgc tgacgacatc gtgaggcacg tccttgacaa 5220 ggtgaagaat tccgggggca ttagcaatgc cctggccgcg ctgatcccgg gcgtcaagcc 5280 gcttgcacgc cagcaagctg gtgacgaagt ccccatcagc aaggccccca cctgcttcac 5340 caacccttct tacattcccg gatctactga agatctgagt tgggacccga ccgacatcca 5400 gtcatcggtt cccactcccg aagttgtcgc cgtcaaaagc aacgacatcg gacttctgaa 5460 gaagatctgg aagtataaga agcccctcat tgctactgct accttcctct ccatcctcgc 5520 ctcggttact gtcctcttca cctccctcta caccaccttc cgctcccgct cccagcccca 5580 gggcgcctac gcaggcatgc ccctcgttcg cgaggggact gtctaccatg gcgcttactc 5640 cggtctcccc ctttcttccg cccccgcctc cactcgcccc aaggcctcgc cgcgccctct 5700 ccgacagggg ttgcaggaat gtgacatcgc gctctcgcgc aatgttgtga ctgtgacttc 5760 ctacgacgag actagtggta agatgctcca actcaacggg ctcgccctct ttgatcggtg 5820 ggtcgcaacc gtgactcaca tcaagctgga ccgcccaatg actgtggaca tcaatggctg 5880 ctcctaccct gtcacccgcc atgtggtgca tggtgagatc gctgccgtct atgctccaaa 5940 gatgccccag gtgcgtgaca tccgtcgctt tatccgggct ccaaggatgc atcatgtcgg 6000 taccgtgatt gccaactcca cctctggccc tgtgttcatg ttggccaaca acgtgaagca 6060 cggtgacaca ccctaccctg accttaccgg tctcactcag gtctacacgt atgacactcc 6120 gtcgtatgat ggcctgtgtg gggcacccct tatcctccac caccccgctt cccccacagt 6180 ggtgggtatc cacgaagctg gcgtcgctgg cgtcagtgga gtggctatcc cgctgctgcc 6240 cctccttgaa aagatccctc tccccaccca gcaatccgta atcactcccc tccccatgcc 6300 tggccccggc gtccacatcc cccgccgctc ccgcctccgc ccctccccgg ccatgggtgc 6360 ctttcctgtt gagaaaatcc ctgctgctct gtcaagtcat gacaagcgtc tgcctgaggg 6420 agtcgacgtt gacaccgtcg cattctcgaa gcagaacagg ggtgacctcg acaagccctg 6480 gcccaccctc cccgttgctg ttgatcttta cttttcccag tgtgatttcc ccaagctacg 6540 catgctgtcg atggacgagg ctatcaacgg aactccactc cttgacggtc tcgatatgaa 6600 gcagtctgct ggctacccct ggtccctcac caccaaccgc cgttccctct tcacgcaaga 6660 ccctgagact ggaaagtaca agcctgtccc ggaacttgag gaagccgtcc tggcgtgcct 6720 cgagaacccg gactacttct acacgaccat gttgaaggat gagctgagac caacggaaaa 6780 ggctctggct ggcaaaactc gtctgatcga ggctgcgccc atccatgcga tcatcgctgg 6840 acgcatgctg ctcggaggtc tcttcgaaca catgcacgcg cgccctggcc agtacgggtc 6900 tgctgtcggc tgtgatcccg actaccattg gactccgttc ttccactcct ttgaccggtt 6960 tgcagaagtt tgggctctgg actactcctg tttcgactct actctcccct cctgcgcttt 7020 cgacctaatc gctgctaaac tctctcaaat catcactcct ctccccggca ttgccgagga 7080 tgccatcgtg aagtacatcc ggtccattag cgtgtccaag cacgtttttg gcgatcgggc 7140 gtatctgatg accggtggca acccctctgg ctgtgttgga acctcaatcc tcaactccat 7200 gattaataac tctgtcctga tctctgcttt cctcacccac ccccagttca accctgcgga 7260 gatgcgcatc ctcacctacg gtgacgacgt gctctacgcc accaccccca ccatccaccc 7320 ttccttcgtc aaatccttct tcgatcagaa caccacccta atcgtgaccc ctgccactaa 7380 ggccggtgac ttcccggatc actccacgat ctgggacgtt accttcctga agcgctggtt 7440 cgtccccgac gaagagcgcc cgtggtacat ccaccccgtg attgaacccg ccacttacga 7500 gcagtctgtc atgtggacca gagggggaga tttccaagat gtggtaacct ccctctcttt 7560 ccttgcgcat catgctggac ccaccaacta tgatgcctgg gcgaccaagg tccgcgagca 7620 ggccgctcgc aaggggctcc tccccaacat cctcccctac tcctatctcc accaccgctg 7680 gctccagctg gtggtctctt aagtctgtgc cttccaagcg tgttggaagt aaagccacgc 7740 cggctcgccc ccgtcatagg gcaacccccg agtaccggtg gtctcgggtc tgctgctaaa 7800 cccagtgggc tcgttgccgt cccccattgc cggatctcca tactcgggta cacctccaag 7860 cattttctgt gatataaaga cctggaaaat tggcttttcc tccaggaccc taagcagaaa 7920 gtgcccccgt gctctttttc aattggcaaa ctcataggtt ggcccgcctc tctctgggcc 7980 ctcccttccc tgtgtcttga aatttggaaa atttcttgca aaaaaaaaaa aaaaa 8035 //