ID   GU181403; SV 2; linear; genomic RNA; STD; VRL; 1611 BP.
XX
AC   GU181403;
XX
DT   06-DEC-2009 (Rel. 103, Created)
DT   11-OCT-2012 (Rel. 114, Last updated, Version 3)
XX
DE   Prune dwarf virus isolate PDV-PA78 movement protein and coat protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Prune dwarf virus
OC   Viruses; Riboviria; Bromoviridae; Ilarvirus.
XX
RN   [1]
RP   1-1611
RA   Mroczkowska K., Paduch-Cichal E., Sala-Rejczak K.;
RT   "Molecular variability of CP gene among PDV isolates";
RL   Unpublished.
XX
RN   [2]
RP   1-1611
RA   Mroczkowska K., Paduch-Cichal E., Sala-Rejczak K.;
RT   ;
RL   Submitted (04-NOV-2009) to the INSDC.
RL   Department of Plant Pathology, Warsaw University of Life Science,
RL   Nowoursynowska 159, Warsaw 02-776, Poland
XX
RN   [3]
RC   Sequence update by submitter
RP   1-1611
RA   Mroczkowska K., Paduch-Cichal E., Sala-Rejczak K.;
RT   ;
RL   Submitted (03-OCT-2012) to the INSDC.
RL   Department of Plant Pathology, Warsaw University of Life Science,
RL   Nowoursynowska 159, Warsaw 02-776, Poland
XX
DR   MD5; ca8f89ba1fa1f8285caa97d9cc03d005.
XX
CC   On Oct 3, 2012 this sequence version replaced gi:270036714.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1611
FT                   /organism="Prune dwarf virus"
FT                   /segment="RNA3"
FT                   /host="Prunus avium F12/1"
FT                   /isolate="PDV-PA78"
FT                   /mol_type="genomic RNA"
FT                   /country="Poland"
FT                   /collection_date="21-Jan-2009"
FT                   /PCR_primers="fwd_seq: gtgtagaaagaagagaagtccgacaag,
FT                   rev_seq: atctagaagcagcatttccaactacga"
FT                   /db_xref="taxon:33760"
FT   CDS             1..882
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:K0IHS7"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:K0IHS7"
FT                   /protein_id="AFU49019.1"
FT                   /translation="MAFSGVSRTITGQTSEANASSAFEVSAEDWNKILSEVDDFYSQTM
FT                   MKNLPTKKCFSLQLKNGIPIQPMKLQSKESRSALARLSAKAKGHVYVHHSIIYLLYIPT
FT                   ILETTSGVLTLKLFNVNTGESIDIDTDSPLNEAAIFVARWPRAVHADDGDGICLLASAV
FT                   SVDAKHASIVGTVYPFWDDSLHKKKPYEKMYPTLRFPIEKSEALAAVDDVKILQTFTKS
FT                   RLVIGSSGKVDINPRLIEIKSDESKKALTVDFKNIAVPVKGKSSLDSFKEAESVPLKGE
FT                   KSDKEAFGVTIG"
FT   CDS             955..1611
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:D2K6I2"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:D2K6I2"
FT                   /protein_id="ACZ58165.1"
FT                   /translation="MSGKATKSGKPTTRSQSFALARKNNNTTPPAGFVKKQFPGGSSKS
FT                   ISEWMLHGPNVPVKSFSGMISRTENLTVNSTASGVYYTMKVRELFRDFAADTKVYGIVF
FT                   RYCLDVSNGVYGLIKGFDVNAPVAPNPLQRRKFTAKQASGVQILAPTGMTVGDIPDDLW
FT                   FVIKYDNAFQPDVPVWFCTQYLQHSMPKRVEVPDSVLYAERDTALMDAMDKIVSG"
XX
SQ   Sequence 1611 BP; 460 A; 319 C; 354 G; 478 T; 0 other;
     atggctttct ctggagtatc caggaccatt accggacaga cgtccgaagc caatgccagt        60
     tcggcatttg aagtttccgc tgaagattgg aataaaatac tcagcgaagt ggatgatttt       120
     tattcccaaa ctatgatgaa gaatcttcca actaagaaat gtttttcttt acagttgaag       180
     aatggtattc caattcaacc catgaagttg caatccaaag aatcccgaag tgctttagca       240
     agattatccg ctaaagcaaa aggtcatgta tacgtgcatc atagtataat ttacttgttg       300
     tacattccga ccattctgga aacaactagt ggggtattaa cattgaaact cttcaatgta       360
     aatactggtg aatctattga tatagatacg gattcaccgt tgaatgaagc ggctattttt       420
     gtagcaagat ggccaagagc agttcatgct gatgacggag atggtatatg tttactagca       480
     tcagctgtaa gtgtggacgc taaacatgcg tcaattgttg gaactgttta ccccttttgg       540
     gatgactcat tgcataagaa gaaaccatat gagaaaatgt acccaacttt gagattcccg       600
     attgagaaat cggaagccct tgctgctgtg gatgatgtaa agatactcca aacatttact       660
     aaatcacgtt tggtaattgg gagtagtgga aaggttgata ttaatcccag acttattgaa       720
     attaagtctg atgagtcaaa gaaggcttta acagtagatt ttaagaatat tgctgtaccc       780
     gtaaaaggta aatcttccct tgatagtttc aaggaagccg agtctgttcc tctcaaagga       840
     gagaagtccg acaaggaagc ttttggtgta acgattggtt aacttacttt gtaagttaat       900
     agctcgtttt tgtttaccaa tttcttccat ttctcgtttg tttatactct cataatgtct       960
     gggaaagcca ctaaatctgg aaagcctact acccgatcac aaagcttcgc tttagctcgg      1020
     aagaataata atactacccc tcctgctggt tttgttaaga aacaattccc aggcggaagc      1080
     tcgaagtcta tttccgagtg gatgcttcac ggaccgaatg tacccgtgaa aagtttttcc      1140
     ggtatgatat ctcgtaccga gaacttgaca gtcaattcga ctgcttccgg tgtatattac      1200
     accatgaaag tccgcgaact tttcagggac tttgctgctg ataccaaggt gtacggaatt      1260
     gtcttccgtt actgccttga tgtttctaat ggtgtctacg gactcattaa aggtttcgat      1320
     gtgaatgcgc ctgtggcgcc taatccccta caacgtagga agttcacagc gaaacaagcc      1380
     agtggggtgc aaattcttgc ccctactggt atgaccgtcg gggatatacc agatgatctc      1440
     tggtttgtca taaaatatga caatgctttt cagcccgacg ttccggtgtg gttttgtact      1500
     cagtacctcc aacactcgat gcctaagaga gttgaggtcc ctgattcagt gctatacgct      1560
     gaacgggaca ctgcccttat ggatgcgatg gataaaatag tcagtggatg a               1611
//