ID   GU181399; SV 2; linear; genomic RNA; STD; VRL; 1610 BP.
XX
AC   GU181399;
XX
DT   06-DEC-2009 (Rel. 103, Created)
DT   11-OCT-2012 (Rel. 114, Last updated, Version 3)
XX
DE   Prune dwarf virus isolate PDV-SOF17P17 movement protein and coat protein
DE   genes, complete cds.
XX
KW   .
XX
OS   Prune dwarf virus
OC   Viruses; Riboviria; Bromoviridae; Ilarvirus.
XX
RN   [1]
RP   1-1610
RA   Mroczkowska K., Paduch-Cichal E., Sala-Rejczak K.;
RT   "Molecular variability of CP gene among PDV isolates";
RL   Unpublished.
XX
RN   [2]
RP   1-1610
RA   Mroczkowska K., Paduch-Cichal E., Sala-Rejczak K.;
RT   ;
RL   Submitted (03-NOV-2009) to the INSDC.
RL   Department of Plant Pathology, Warsaw University of Life Science,
RL   Nowoursynowska 159, Warsaw 02-776, Poland
XX
RN   [3]
RC   Sequence update by submitter
RP   1-1610
RA   Mroczkowska K., Paduch-Cichal E., Sala-Rejczak K.;
RT   ;
RL   Submitted (03-OCT-2012) to the INSDC.
RL   Department of Plant Pathology, Warsaw University of Life Science,
RL   Nowoursynowska 159, Warsaw 02-776, Poland
XX
DR   MD5; 4a00f6e2eac6b913b3debac362f56d6d.
XX
CC   On Oct 3, 2012 this sequence version replaced gi:270036706.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1610
FT                   /organism="Prune dwarf virus"
FT                   /segment="RNA3"
FT                   /host="sour cherry cv. Big Core"
FT                   /isolate="PDV-SOF17P17"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="24-Jun-2009"
FT                   /PCR_primers="fwd_name: pdvf01, fwd_seq:
FT                   gtgtagaaagaagagaagtccgacaag, rev_name: pdvr02, rev_seq:
FT                   atctagaagcagcatttccaactacga"
FT                   /db_xref="taxon:33760"
FT   CDS             1..882
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:K0I786"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:K0I786"
FT                   /protein_id="AFU49018.1"
FT                   /translation="MAFSGVSRTITGQTSEANASSAFEVSAEDWNKILSEVDDFYSQTM
FT                   MKNLPTKRCFSLQLKNGVPIQPMKLQSKESRSALARLSAKAKGHVYVHHSIIYLLYIPT
FT                   ILETTSGVLTLKLFNVNTGESIDIDTDSPLNEAAIFVTRWPRAVHADDGDGICLLASAV
FT                   SVDAKHASIVGTVYPFWDDSLHKKKSYEKMYPTLRFPIEKSEALAAVDDVKILQTFAKS
FT                   RLVIGSSGKVDINPRLIEIKSDESKKALTVDFKNIAVPVKGKSSLDSFKEAESVPLKEE
FT                   KSDKEAFGVTIG"
FT   CDS             954..1610
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:D2K6H8"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:D2K6H8"
FT                   /protein_id="ACZ58161.1"
FT                   /translation="MSGKATKSGKPTTRSQSFALARKNNNTTPPAGFVKRQFPGGSSKS
FT                   ISEWMLHGPNLPVKGFSGMISRTENLTVNSTASGVYYTMKIRELFKDFSADTKVYGIVF
FT                   RYCLDVSNGVYGLIKGFDVNAPVAPNPLQRRKFTAKQASGVQILAPTGVTVGDIPDDLW
FT                   FVIKYDNAFQPNVPVWFCTQYLQHSMPKRVEIPDSVLYAERDTALMDAMDKIVSG"
XX
SQ   Sequence 1610 BP; 458 A; 331 C; 353 G; 468 T; 0 other;
     atggctttct ctggtgtttc caggaccatt accggacaga cgtccgaagc caatgccagt        60
     tcggcatttg aagtttccgc tgaagattgg aacaaaatac tcagcgaagt ggatgacttt       120
     tattcccaaa ccatgatgaa gaatcttcca actaagagat gtttttcttt acagttgaag       180
     aatggtgtcc caattcaacc catgaagttg caatccaaag aatctcgaag tgctttagca       240
     agattatccg ctaaagcaaa aggtcatgta tatgtgcatc acagtataat ttacttgttg       300
     tacattccga ccattctgga gacaactagt ggggtattaa cattgaaact tttcaatgtg       360
     aataccggtg aatctattga tatagacact gattcaccgt tgaatgaagc ggctattttt       420
     gtaacaagat ggccaagagc agttcatgct gatgacggag atggtatatg tttactagca       480
     tcagccgtaa gtgtagacgc taaacatgcg tcaatagttg gaactgttta ccccttttgg       540
     gatgactcat tgcataagaa gaaatcatat gagaaaatgt acccaacttt gagattcccg       600
     attgagaaat cggaagccct tgctgctgta gatgatgtaa agatactcca aacattcgcc       660
     aaatcacgtt tggtaattgg gagtagtgga aaggttgata tcaatcccag acttattgaa       720
     attaagtctg atgagtcaaa gaaggcttta acagtggatt ttaagaatat tgctgtaccc       780
     gtaaagggta aatcttccct tgatagtttc aaggaagccg agtctgttcc tcttaaagaa       840
     gagaagtccg acaaggaagc ttttggtgta acgattggtt aactcacttt gtgagtcaat       900
     agctcgtttt gtttaccatt ttcttccaat tctcgtctgt tcatactctc ataatgtctg       960
     ggaaagccac taaatctgga aagcctacta cccgatcaca aagctttgct ttagctcgga      1020
     agaataataa cactaccccc cctgctggtt tcgtcaagag acaattcccg ggtggaagct      1080
     cgaagtctat ttccgagtgg atgcttcacg ggccaaattt gcccgtaaaa ggtttttccg      1140
     gtatgatatc tcgtaccgag aatctgacag tcaattcgac cgcttccggt gtttactaca      1200
     ccatgaaaat ccgagagctt ttcaaggatt tttctgctga taccaaggta tacggaattg      1260
     tcttccgtta ctgccttgat gtttctaatg gtgtctacgg actcattaaa ggtttcgatg      1320
     tgaatgcgcc agtggcgcct aatcccctac aacgtaggaa gttcacagcg aaacaagcca      1380
     gtggggtgca aattcttgct cctactggtg tgaccgttgg ggatatacca gatgatctct      1440
     ggttcgtcat aaaatatgac aatgcttttc agcccaacgt tccggtgtgg ttctgtactc      1500
     agtaccttca acactcgatg cctaagagag tcgaaattcc cgattcagtg ttatacgctg      1560
     aacgggatac cgctctcatg gacgcaatgg ataaaatagt cagtggatga                 1610
//