Dbfetch
ID GU180095; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC GU180095; XX DT 09-DEC-2009 (Rel. 103, Created) DT 16-MAY-2010 (Rel. 104, Last updated, Version 2) XX DE Tomato leaf curl New Delhi virus isolate ToLCNDV-OM segment A, complete DE sequence. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RX DOI; 10.1007/s10658-010-9586-0. RX AGRICOLA; IND44363462. RA Chang H.-H., Ku H.-M., Tsai W.-S., Chien R.-C., Jan F.-J.; RT "Identification and characterization of a mechanical transmissible RT begomovirus causing leaf curl on oriental melon"; RL Eur. J. Plant Pathol. 127(2):219-228(2010). XX RN [2] RP 1-2739 RA Jan F.-J.; RT ; RL Submitted (05-NOV-2009) to the INSDC. RL Department of Plant Pathology, National Chung Hsing University, 250 RL Kuo-Kuang Road, Taichung 402, Taiwan XX DR MD5; 4d965d19f25f2dd55795a9a0bbd44db3. DR EuropePMC; PMC3125359; 21676270. DR EuropePMC; PMC5510628; 28770240. DR EuropePMC; PMC6460037; 30975814. XX CC GenBank Accession Numbers GU180095-GU180096 represent the complete CC genome of Tomato leaf curl New Delhi virus. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="A" FT /host="Cucumis melo var. makuwa cv. Silver Light (oriental FT melon)" FT /isolate="ToLCNDV-OM" FT /mol_type="genomic DNA" FT /country="Taiwan" FT /collection_date="May-2007" FT /db_xref="taxon:223347" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:D2K694" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D2K694" FT /protein_id="ACZ63312.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKTYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNARIEGTPTTQLRQPLWNSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="AV1" FT /db_xref="GOA:D2K695" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D2K695" FT /protein_id="ACZ63311.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGTRAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT IGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPTGTPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /db_xref="GOA:D2K696" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D2K696" FT /protein_id="ACZ63315.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFRILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFQIWTGLRPPIGIFLRVFKTQVLKYLDSLGVIGI FT YNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY" FT gene complement(1192..1596) FT /gene="AC2" FT CDS complement(1192..1596) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /db_xref="GOA:D2K697" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D2K697" FT /protein_id="ACZ63314.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLQCGCTYYISIN FT CHDHGFTHRGVHHCGSSREWRVYLGNSKSPVFQNFETRQQAVPNTARHNQDSDTVQPQP FT AESPGTSQVFSNFPNLDGLTPSDWDFLASL" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /db_xref="GOA:D2K698" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D2K698" FT /protein_id="ACZ63313.1" FT /translation="MAPPRRFRIDAKNYFLTYPKCSLTKEETLSQLQTLETPTAKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAKAINTGNKEDALKVIKELAPKDYVLQFH FT NLISNLDRIFQPPSEVYASPFSISSFDRVPPQLVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGRHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKDYLDEEKNAALKQWAMKNAVFITLEEPL FT YSGRENIAPTEEEEEHSQEAS" FT gene complement(2251..2427) FT /gene="AC4" FT CDS complement(2251..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D2K699" FT /protein_id="ACZ63316.1" FT /translation="MGLHISMFSSNSKGNSSARITDSSTWFPQVGQHISIRTFRELNQR FT QMSKHTSTKTETF" XX SQ Sequence 2739 BP; 746 A; 609 C; 616 G; 768 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcgacga atgaaatgga cgctacattg 60 cttatatagt gcggggggac caataaatag acttgctcac gaagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaattcccag aaagcgttca tggtctgagg tgcatgctag 180 ctgtaaaata tcttcaagag atcgagaaga cctattcccc agacacagtc ggatacgatc 240 ttgtcagaga tctcatactt gtccttcgag cgaagaacta tggcgaagcg accagcagat 300 atcatcattt caacgcccgc atcgaaggta cgccgacgac tcaacttcga cagcccctat 360 ggaactcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaggt gcagtctttt gaatctaggc acgacgtgtc gcatattggg 540 aaggtcatgt gtgtcagtga cgttacacga ggaactggac tcacacatcg catagggaag 600 cgattctgtg tgaaatccgt ctacattctc ggcaagatat ggatggatga aaacatcaag 660 acaaaaaatc atactaacag tgtcatgttt tttttggttc gtgaccgtcg tcctacagga 720 acaccccaag atttcgggga agtttttaac atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga ccgttatcaa gtcttacgga agtggcatgc gactgtgacg 840 ggaggaacct acgcatctag ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcatta 960 atgttgtata tggcctgtac gcacgcatca aatcctgtgt atgctacttt gaaaatccgg 1020 atctatttct atgattcggt aacaaattaa taaatatcca gctttatatc atatgaagtc 1080 catacatcaa tcgtttgttc caatacatta tccaatacat gataaactgc ccttattaca 1140 ttataaattc ctatgacacc caaactatcc aggtacttaa ggacctgggt tttaaagact 1200 cgcaagaaaa tcccaatcgg agggcgtaag cccgtccaga tttggaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact gtatctgaat cttgattatg 1320 tcgtgctgtg ttaggaacgg cctgctgtcg tgtttcaaaa ttctgaaata caggggattt 1380 cgaatttccc aggtatacac gccactctct gctcgatccg cagtgatgta ctcccctgtg 1440 cgtgaatccg tgatcatggc agttgattga tatataatac gtgcacccac actgcagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctgtggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattttt cattgcccac tgcttcagtg 1620 ctgcattttt ttcttcgtcc agatagtcct tataactgct atttggacct ttattgcaga 1680 ggaagatagt gggaattcct cctttaatca tgacaggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgc ggatcaacat 1800 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga tctagatgtc 1860 cacacaagta attgtgtcgg cctaagcacc gagcccacat tgttttgccc gttctactat 1920 ccccctctat gactatgctt atgggcctaa aaggccgcgc agcggcacac acaacattgg 1980 acgacaccca atcgacgagt tgcggaggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 acgcataaac ctcagaagga ggttggaaaa tgcgatctaa attgctaatt aaattatgaa 2100 actgcagaac gtaatctttt ggtgctaatt cctttatcac tttcaacgca tcttctttat 2160 tccccgtatt aatcgcctta gcatatgcat cgttggccgt ctgctgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccgtctttg tcgatgtatg 2280 ctttgacatc tgacgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggaaac caagtcgaag aatctgttat tcttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgtgga gacccatcct cgtgaagctc ccgacagatt ttgatgaatt 2460 tcttcgcagt cggggtttct agggtttgca attgggaaag tgtctcttct ttagttagag 2520 aacactttgg atatgtaagg aaataatttt tggcatctat tctgaaacga cgtggcggag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaacttc ctctatgtaa ttggcgtctg 2640 gcgtcccata tataggtagg acgctaaatg gcagaattgt aatttctgaa aggaaattac 2700 tttaattcaa aaccctcata gcggccattc gttaatatt 2739 //