Dbfetch
ID GU178820; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC GU178820; XX DT 02-JUL-2010 (Rel. 105, Created) DT 02-JUL-2010 (Rel. 105, Last updated, Version 1) XX DE Tomato yellow leaf curl virus - Israel strain Australia:Bundaberg3:2006 DE segment DNA A, complete sequence. XX KW . XX OS Tomato yellow leaf curl virus - Il OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W., RA Thomas J.E.; RT "Tomato yellow leaf curl virus in australia: distribution, detection and RT discovery of naturally occurring defective DNA molecules"; RL Unpublished. XX RN [2] RP 1-2781 RA Van Brunschot S.L., Campbell P.R., Persley D.M., Geering A.D.W., RA Thomas J.E.; RT ; RL Submitted (05-NOV-2009) to the INSDC. RL Horticulture and Forestry Science, Queensland Primary Industries and RL Fisheries, Indooroopilly Research Centre, 80 Meiers Road, Brisbane, RL Queensland 4068, Australia XX DR MD5; e3a375275e12a8498a523e3e7b228e69. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus - Il" FT /segment="DNA A" FT /host="Solanum lycopersicum cv. Petula" FT /strain="Australia:Bundaberg3:2006" FT /isolate="BRIP51989" FT /mol_type="genomic DNA" FT /country="Australia:Bundaberg, Queensland" FT /collected_by="J. E. Thomas" FT /collection_date="01-Dec-2006" FT /identified_by="J. E. Thomas" FT /note="TYLCV-IL[AU:Bun3:06]" FT /db_xref="taxon:66366" FT gene 148..498 FT /gene="V1" FT CDS 148..498 FT /codon_start=1 FT /gene="V1" FT /product="capsid protein" FT /note="CP" FT /db_xref="GOA:O92601" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:O92601" FT /protein_id="ADI56634.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT gene 308..1084 FT /gene="V2" FT CDS 308..1084 FT /codon_start=1 FT /gene="V2" FT /product="movement protein" FT /note="MP" FT /db_xref="GOA:D8WKX1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D8WKX1" FT /protein_id="ADI56633.1" FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="C3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /note="Ren" FT /db_xref="GOA:D8WKX2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D8WKX2" FT /protein_id="ADI56635.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPFYFKITEHRQRPFLMNHDI FT ISIQIRFNHNIRKALGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISIKN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1226..1633) FT /gene="C2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activator protein" FT /note="TrAP" FT /db_xref="GOA:D8WKX9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D8WKX9" FT /protein_id="ADI56636.1" FT /translation="MQSSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSLLFQDNRTQTEAISNEPRHHFHSDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="C1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="C1" FT /product="replication initiation protein" FT /db_xref="GOA:D8WKW2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D8WKW2" FT /protein_id="ADI56637.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDSRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELDEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT gene complement(2171..2464) FT /gene="C4" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D8WKY1" FT /protein_id="ADI56638.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRVQ FT QMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 760 A; 529 C; 607 G; 885 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtccccacg agggttccac agatgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtagtctgtc ttgcaatatg tgggatccac ttctaaatga atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgcct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cggaagccca gaatatacag 480 aatgtatcga agccctgatg ttcctcgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttggtt cgtgatagaa ggccctatgg aaacagccca atggattttg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aactgtgaag aatgatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttagaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatacaat acatgatcaa ctgctctgat tacattttta attgaaatta caccaagact 1200 atctaaatac ttaagaactt gatatctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccaatg ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctctg 1380 tctgtgttct gttatcttga aataaaaggg attgtttatc tcccagataa aaacgccatt 1440 ctctgcttga ggagcagtga tgagttcccc tgtgcgtgaa tccatgattg ttgcagttga 1500 tgtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaagattg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa ataatgcggg tctacgtcat caatgacgtt gtaccacaca 1860 tcattactgt acacttttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtctccatg gccgcgcagc ggaagatacg acgttctcgg cgacccactc gtcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ctaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttctctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcctcggca 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgctatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgaactctta 2340 gctgcctgaa tgttcggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac 2400 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggagttctct gcaaactttg atgtattttt tatttgttgg ggtttctagg 2520 ttttttaatt gggaaagtgc ttcctcttta gagagagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaattgg tgtccctcag 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2700 ggtaattttg taaaagtaca ttgcaattca aaattcaaaa ttcaaaaatc aaatcaataa 2760 agcggccatc cgtataatat t 2781 //