ID GU167974; SV 1; linear; genomic RNA; STD; VRL; 4620 BP. XX AC GU167974; XX DT 10-DEC-2009 (Rel. 103, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Cherry leaf roll virus segment RNA1 polyprotein gene, partial cds. XX KW . XX OS Cherry leaf roll virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-4620 RX DOI; 10.1094/PDIS-94-4-0477B. RX AGRICOLA; IND44357575. RA Marais A., Faure C., Candresse T., Hulle M.; RT "First Report of Nasturtium as a Natural Host of Cherry leaf roll virus on RT Amsterdam Island"; RL Plant Dis. 94(4):477-477(2010). XX RN [2] RP 1-4620 RA Marais A., Faure C., Hulle M., Candresse T.; RT ; RL Submitted (02-NOV-2009) to the INSDC. RL UMR GDPP, INRA, University Bordeaux 2, 71 Avenue E. Bourlaux, Villenave RL d'Ornon 33883, France XX DR MD5; 770dbd6bf7588f2dfc8120ee240648af. XX FH Key Location/Qualifiers FH FT source 1..4620 FT /organism="Cherry leaf roll virus" FT /segment="RNA1" FT /host="Tropaeolum majus" FT /mol_type="genomic RNA" FT /isolation_source="Kerguelen French sub-Antarctic island" FT /collection_date="Dec-2008" FT /db_xref="taxon:12615" FT CDS <1..3066 FT /codon_start=1 FT /product="polyprotein" FT /note="putative RNA polymerase" FT /db_xref="GOA:D2JZU2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D2JZU2" FT /protein_id="ACZ65483.1" FT /translation="VGLPCTYSAKFFCGGVGAGSAGAMMKMSVQSTIPSGSDVQSYASR FT NLRRVYRPTRLGLQSAMNPVETVSQAEQLMAWIDTPEGNLISCCRFKARSLAMTYHQAR FT AIAPGAKIFITYMTAAGTSSVPLEHIWDPQETALTPNLRRFNDTEVCVYTHPQLSPLPG FT PLESMFVEDMQAGPSLYHVEGRVMKLVRDSHEFLPDDFVGAPEEIVPHVWSGVVHLNTH FT ALTIDNYKWGGDYKINIPRSLVGSYPNAKEDCGGLLFAKIHNSYKVIGMHVSGEQLADG FT SYLSAAALFPRPSLFMSAQSGLRTLTVEAGKDTRGVSKVGYIRAEEIPRAPRKSSFVEV FT EAELKVPVPPGVPLKQIAILSNSDERLKGTQFEGYDPLRQATVKCEDPMFDLRSDILED FT VLEDVLETWFDCAPSLCLLSDDEMVNGNDEEVFLDAVVHSTSEGYPYILERGPGEKGKE FT RYLEQDPALPEGKLRVRPGTSVHRDLLALERSIHSTIPVLVGMEIPKDERLKESKILIP FT ATRTFTVLPMPYNLLLRKYFGRCVAFLQGNRHRLPCAVGVNPYSNEWTQIFDGLARVSP FT KALNGDYKGFDGKLNFQMYDAIARLLCRLHRDESTATARYNLILAMYARYSLCGSQVYE FT VRAGLPSGCAITVIMNSIFNEILIRYAYRVSVGPILRNRFNHFVKLIVYGDDNLIAVDP FT QLASGTFVGYEGGKMVVTDVFDGATIQRVLAQVNITITDGSDKSAKEWHFKPLESLDFL FT KRGFKRMADGRVLAPLDLSAIFSSLHVVRPDQGSTAAAVNINARVALRELWLHQDQNLF FT EMVREFYKRHNFVDLPTWRECRDFHQSQYSEWQPFKEYKFLELPLPEQENREFMENHAT FT KKSVCVVADQTIVVGPAWKPSNPEGFFIIDLLGPTCGRGGDATNIPTYGDGSGRLGTAT FT WVRDWRSAKKQPIVQLATHARKEGKIIAFRDAAPFLNGWNAAIAFCEGLGMDSNDLIAV FT YSRSGGLHRSLIERNFRAASFEPRRVAPGVFA" FT 3'UTR 3067..4620 XX SQ Sequence 4620 BP; 1072 A; 1081 C; 1220 G; 1247 T; 0 other; gtgggactgc catgcaccta ctccgccaaa tttttttgcg gtggcgtagg agccggctct 60 gcaggggcta tgatgaaaat gtctgtacag tcgacaattc catcagggtc cgatgtgcag 120 tcgtatgcat cacgcaatct gcgtcgtgtg tacaggccaa ctaggctggg tctgcaatct 180 gcgatgaatc ctgtggagac tgtttcgcag gcagagcagc tgatggcatg gatagatacc 240 cccgaaggga atctcatctc atgttgtcgt tttaaggccc ggtctctagc catgacatat 300 caccaggcta gggctattgc cccaggggca aaaattttta tcacatatat gactgcggct 360 ggcacgtcaa gtgtgccgct ggagcatata tgggatccac aagagaccgc cctcactccc 420 aatctacggc ggttcaatga tactgaggtt tgcgtatata cgcatcctca gttgtccccc 480 ctcccgggcc cccttgaatc catgttcgta gaggacatgc aagctggccc ctcgttgtac 540 cacgttgagg gaagagtcat gaaattggta cgagactctc acgagttttt gcctgacgat 600 tttgttggcg ctcctgagga gatcgtacca cacgtctggt cgggtgtggt acatttaaac 660 actcacgccc tcaccattga caactataag tgggggggtg attataaaat aaacatccct 720 aggtcgttgg tgggttcgta ccccaacgcc aaggaggatt gcggcggcct tttattcgcc 780 aaaatccata actcctacaa ggttataggg atgcacgttt ctggagagca gctagcggac 840 gggtcgtatc tgtctgctgc cgcccttttt ccgaggccga gcctatttat gtcggcgcaa 900 tcgggcctgc gcaccttgac ggttgaggct ggcaaggata cgcgtggtgt ttctaaggtc 960 ggctatatta gggccgaaga aataccacgc gctcctcgca agtcctcctt cgttgaggtg 1020 gaagcggagt tgaaggtccc agttcctcct ggtgtacctt tgaagcaaat agccatacta 1080 tccaactcag atgagcgcct caaaggtact cagtttgagg ggtatgaccc gctgagacag 1140 gcgactgtca aatgcgagga cccaatgttc gacctgaggt ctgacatatt ggaagatgtg 1200 ctagaggatg tactggagac ctggttcgac tgtgcaccct cactgtgcct tctttccgat 1260 gatgagatgg tcaatggcaa cgacgaagag gttttcctcg atgcagtcgt ccattccacc 1320 tcggagggat acccctatat cctcgagaga ggaccagggg agaaaggtaa ggaaaggtat 1380 cttgaacaag atcctgcctt gccggaaggt aagttgaggg tccgtcccgg aacctcagtg 1440 cacagggatt tgctcgccct tgaaaggagc atccactcca ccatcccagt tttagttggg 1500 atggagatac ctaaggatga gagactcaaa gagtctaaaa tccttattcc ggcgacccgt 1560 actttcacgg tgttgcccat gccctacaac ctcctactgc gtaaatattt tggtaggtgt 1620 gttgcttttt tgcagggcaa taggcatagg ttgccttgtg cagttggagt gaacccctac 1680 tctaacgagt ggacccaaat ttttgatggg ctagctcggg tgtcgcctaa ggcacttaat 1740 ggagattata aagggttcga tggcaagctg aactttcaaa tgtacgatgc tatagcgcgc 1800 cttttatgtc gcttgcatcg tgatgagagt acagctaccg ccaggtataa cctaatactc 1860 gccatgtatg cccgatactc cctgtgtgga agtcaggtgt acgaggtgcg agcaggtttg 1920 ccctccggct gtgcaattac cgttatcatg aactcgattt ttaatgagat cctgatacgg 1980 tatgcctata gagtttcggt tgggcctatt ctgcgcaata ggttcaacca ttttgttaag 2040 ttgattgtct atggggacga caatctaata gcagtggatc cccaacttgc ctccggaacc 2100 tttgttggtt atgaaggtgg caagatggta gtcaccgatg tttttgacgg tgctaccata 2160 cagagagttt tggcccaagt aaatattact ataaccgatg ggtcggacaa gagtgccaag 2220 gaatggcact tcaagccttt ggaatctctc gattttttga agagaggttt caaaaggatg 2280 gccgatggtc gcgttctagc accgctagat ttgagtgcca ttttttcctc gctgcatgtc 2340 gtgcgcccag accagggctc cacagccgca gctgtaaata taaatgctag ggtcgctttg 2400 cgcgagctct ggctgcacca ggaccaaaac ctttttgaaa tggtccgaga gttttataag 2460 cgccacaatt ttgtagattt acccacgtgg cgcgagtgca gggatttcca ccagtcccag 2520 tactctgaat ggcagccttt caaggagtac aaatttttgg agctgcccct ccctgaacaa 2580 gagaacaggg agtttatgga aaaccacgcc actaagaaaa gcgtgtgcgt ggtcgcggac 2640 caaaccatag ttgttggtcc cgcatggaag ccctccaacc cagagggttt ttttataatc 2700 gatctcttag gccctacttg tggacgtggt ggtgatgcca ccaacatacc cacgtatggt 2760 gatgggtcgg gcaggttggg tactgccact tgggtgcgcg actggcgttc tgcaaagaaa 2820 cagccaattg tccagttggc cacccatgcc agaaaggagg gcaagatcat agccttccgc 2880 gatgcagctc cattccttaa tggttggaat gcggcgatag ccttctgcga gggtctcggc 2940 atggattcca acgatcttat tgccgtgtac tcccgctctg ggggcttgca tcgctcgctc 3000 atagagcgaa attttagagc agctagcttt gagccacgca gagtggctcc gggcgtgttt 3060 gcctagcttg gtgccctaag cactcagcct cctagctgtc tctaggggcg cgccgttgcc 3120 gtaagcaacg ttcacgggga cgtcatcact tagctctacc tttgggttga agatgtgaac 3180 gaggaagttg agcaccctcg atcccctagt ctagctagct ccacgggaca acacgtggac 3240 gtgagatgat agtaaactat ccactcagtt tgacgcctga gttgagtagt agacacaaat 3300 ggaaaatgct ataaggttgg tgttcctgaa aaggggctcc tgtccgcttg cgtggttagc 3360 atattccttc tttgtgttgt attagtctga ctgctggaaa gacagctgac atggaagaca 3420 aagtcttatc cgatctgcca gagatgaaga tctaaaacca atatctcaac ctcgcccaag 3480 gaggttaact ttggacggtg gggatgccgg tcctatccct gtagtggctg tccttaaaat 3540 gatagtctac ccttatttgt tcggggaatc gaacatcata tctgcattta gtttagttca 3600 ttctgtttta gttgtagatt catacatacg cacatgggac gtgattaccc atgtagtacg 3660 cgaatgcttc cgcccttagt agcacctctc gcatggtgtc cacgagagct ctgctgtgcg 3720 aagttcttaa tttagctgtg tgtattcgga attacgggtg taaccccctc cagagctggc 3780 gtgtaggatg cctatgttgg tatcattgga tttccctttg atgtaccaga caggttcccc 3840 gaagccggcc cacactcctg gcgggagtag tggaggccat ctccgagtgc gcagagttta 3900 aaatcttttc gaacttaacg atagccgaag caagtagcta gcgttgcatt ggtcttgcgt 3960 ggttttcagc gcaaggcggt cttaatttat aggctctatc tagccttagc tgaaactagt 4020 agcttgatcc atgggtgtta agtccaggaa agcagtagta aatgatgcag tcccacccta 4080 ccccataact aattgggatg cgtggttgct gactttcacg aacctttcta atcggtaaca 4140 cacttgtgga gatagccaaa agttaggcat gatgagtggg cgtcctcttt tatgacgtca 4200 ttaaatggag tatcacaact tctggcgacc gtgtaacggc aacagtgtta aggtgacact 4260 ggtgggctga ctgcaatcag tcccatgcga ccggtcttag tagtatcaag aatgctgcag 4320 ccaagggctc catgagtttt agttaacgaa tatctactgc catccgtaat aatgtgtggt 4380 ggtcctctgt cttacttggt atatgagcca gatgtgctgg taacacgtct gtgactacga 4440 ttccaagccc aagaattcag ggggttatgt gggtaggtag cgttagctag ggggttgttt 4500 agcgatattt gttgccccgt tagtgtttca aaattcgctt attgtatgag tgtcggactc 4560 aagcagtgtt taggttttat ttctttgatt taaatgttta cttttaagtt tttccttttt 4620 //