ID GU167940; SV 1; linear; genomic RNA; STD; VRL; 5866 BP. XX AC GU167940; XX DT 03-OCT-2010 (Rel. 106, Created) DT 22-NOV-2010 (Rel. 106, Last updated, Version 3) XX DE Cotton leafroll dwarf virus isolate ARG, complete sequence. XX KW . XX OS Cotton leafroll dwarf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5866 RX DOI; 10.1007/s00705-010-0764-3. RX PUBMED; 20677026. RA Distefano A.J., Bonacic Kresic I., Hopp H.E.; RT "The complete genome sequence of a virus associated with cotton blue RT disease, cotton leafroll dwarf virus, confirms that it is a new member of RT the genus Polerovirus"; RL Arch. Virol. 155(11):1849-1854(2010). XX RN [2] RP 1-5866 RA Distefano A.J., Bonacic Kresic I., Hopp H.E.; RT ; RL Submitted (01-NOV-2009) to the INSDC. RL Plant Biotechnology, Instituto de Biotecnologia-INTA, Los Reseros y Las RL Cabanas s/n, Buenos Aires 1686, Argentina XX DR MD5; 71410f011391431ddc9ec07598380451. DR EuropePMC; PMC4007622; 24607237. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5866 FT /organism="Cotton leafroll dwarf virus" FT /host="Gossypium hirsutum (cotton)" FT /isolate="ARG" FT /mol_type="genomic RNA" FT /country="Argentina" FT /collection_date="May-2006" FT /note="CLRDV" FT /db_xref="taxon:312295" FT gene 71..856 FT /gene="ORF0" FT CDS 71..856 FT /codon_start=1 FT /gene="ORF0" FT /product="PO protein" FT /note="putative silencing suppressor" FT /db_xref="GOA:E2DRQ2" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:E2DRQ2" FT /protein_id="ADN83833.1" FT /translation="MLNLIICRISSAALIRHASASVSNNQVDFLFFLTQLPEYLTFCNS FT PELNPFHDGFNESFLLRSLLFLLPFIIRGISSSRFALPRGIRADFMALSRATKYMPTVT FT DFKGNYLVALHLPSRRATGRATRERFAIRSLVENNRLEFEYLCTRGYEYFKRFAQTLAG FT EVRECPQERWTVRPSCMGLRALAIRLMDLVPGDEPLSNRSGHRLSVLVHNLYGDGASLS FT FWRIARFPDSSYYHFDDEGGVGLLYQSQIQQLLCEGESS" FT gene 225..3442 FT /gene="ORF1-ORF2" FT CDS join(225..1706,1706..3442) FT /codon_start=1 FT /ribosomal_slippage FT /gene="ORF1-ORF2" FT /product="RNA-dependent RNA polymerase P1-P2 protein" FT /note="fusion protein; low abundance product derived from FT -1 ribosomal frameshift" FT /db_xref="GOA:E2DRQ3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E2DRQ3" FT /protein_id="ADN83834.1" FT /translation="MMALMSLFSFVLFFFSFHLSSGEFLPLDSLFPVGFEQTLWPSQEP FT PSICPRLPISKATISLPCICPPAEPLAERPAKDLLFALWSKTTGSSLSISALADTNTLK FT DSLKLWREKLESAPKSAGRFALHVWAFALWQFVSWTWYLVTNHFLTVAVIVFLYLCTTC FT MVTALRFLFGGLLGFLIRHITILTMKAVWGCYTKAKSSSSYVKEKAVEGFLHFTVPQKP FT PRSSVLLVQHPDGSHVGYATCILLYNGEYGLLTAEHVWNTPGAKVVSTKGDRNKIPFSE FT FRRILSVDGGDLVILRGPPSWNSLLSTKAVPFTTQSRLEKGKTTLYSFDGEWKAINGEV FT VGTEGKFAAHLSNTSGGYSGTPLFHGKCVVGVHVGGSKLNNWNLAATIPTVSGLTSPNY FT AFETTAPQGRVFDEAAIENYESLVRLTESLVNFQPKSGKKWADYSEEEDFFVEASETLP FT LQQPVPSAPPLSPRFYPQVDASLVAAPMVPESASGNRTRRSRPPKQGKSICHPRRAAER FT WSIRNGSAGGRAGKQNFNQLDREGGSQTSGIQNAHSRDPSSTTQAAAAASEAIKDFRNY FT FHAFYNWQVPASAQEVPGFQACGALPQFYYAKQKGKSPWGEQLCAEFPQLEEETRGFGW FT PQFGPQAELKSLQLQAARWLERAQSAQIPSKEQRERVIQKTVEAYASCRTNRPAATARD FT VLSWPDFLEDLKEAVHSLELDAGVGVPYVGYGLPTHRGWVEDPKLLPVLSRLVFDRLQK FT MSEASFESMTAEELVRAGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVL FT FQAQNKREIALWRAIPSKPGFGLSTDGQTQEFLNLLANQMSTTAEDVVARWREYLVPTD FT CSGFDWSVADWMLHDEMEVRNRLTVQNNGLTRRLRACWLRCISNSVLCLSDGTLLAQRV FT AGVQKSGSYNTSSSNSRIRVMSAYHCGASWAMAMGDDALESVDTDLSVYKQLGFKVEVS FT GELEFCSHIFLSPTLAIPVNRAKMLYKLIHGYNPGSGNLEVISNYLNACFSVLNELRSD FT PDFVALLYSWLVTPVLPQKNDTED" FT gene 225..2156 FT /gene="ORF1" FT CDS 225..2156 FT /codon_start=1 FT /gene="ORF1" FT /product="P1 protein" FT /db_xref="GOA:E2DRQ4" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:E2DRQ4" FT /protein_id="ADN83835.1" FT /translation="MMALMSLFSFVLFFFSFHLSSGEFLPLDSLFPVGFEQTLWPSQEP FT PSICPRLPISKATISLPCICPPAEPLAERPAKDLLFALWSKTTGSSLSISALADTNTLK FT DSLKLWREKLESAPKSAGRFALHVWAFALWQFVSWTWYLVTNHFLTVAVIVFLYLCTTC FT MVTALRFLFGGLLGFLIRHITILTMKAVWGCYTKAKSSSSYVKEKAVEGFLHFTVPQKP FT PRSSVLLVQHPDGSHVGYATCILLYNGEYGLLTAEHVWNTPGAKVVSTKGDRNKIPFSE FT FRRILSVDGGDLVILRGPPSWNSLLSTKAVPFTTQSRLEKGKTTLYSFDGEWKAINGEV FT VGTEGKFAAHLSNTSGGYSGTPLFHGKCVVGVHVGGSKLNNWNLAATIPTVSGLTSPNY FT AFETTAPQGRVFDEAAIENYESLVRLTESLVNFQPKSGKKWADYSEEEDFFVEASETLP FT LQQPVPSAPPLSPRFYPQVDASLVAAPMVPESASGNEPGGADRPNKASPSATPVEQQNG FT GPSVMDRLVAELVNKISTSSIEREVAKQVASKMPILETPPLQPKQQRRRRKQSKTSETT FT STPSTTGKYQPPHKRSQASKPVAPSPSSTTPNKRANRPGGSSSAQNSLNWRKKPEASGG FT LNSAPKRS" FT gene 3630..5717 FT /gene="ORF5" FT CDS 3630..5717 FT /codon_start=1 FT /transl_except=(pos:4233..4235,aa:OTHER) FT /gene="ORF5" FT /product="P5 protein" FT /note="CP readthrough protein; putative aphid transmission FT protein; ORF3 and ORF5; translated from subgenomic RNA as a FT low abundance protein P3/P5 by an in-frame readtrough of FT the ORF3 stop codon" FT /db_xref="GOA:E2DRQ5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:E2DRQ5" FT /protein_id="ADN83838.1" FT /translation="MNTVVGRRTINGRRRPRRRNRRRQNQPVVVVQAPRNTQRRRRRRR FT GGRNRTGGRIPGGPGASSETFVFSKDSLSGSSSGSITFGPSLSDCPAFSNGILKAYHEY FT KISMVLLEFISEASSTSSGSISYEVDPHCKLSTLSSTINKFGITKNGRKQFAASFINGQ FT EWHDTSEDQFRILYKGNGSSSIAGSFKVTIRCQFHNPKXVDDGPPPPGPSPPPSPSPPP FT PVPSRFWGYEGNPQCKILTAENNRNIDSRPLNFVSMYKWEDEKWDKVNLQAGYSRNDRR FT CMETYFVIPASRGKFHVYLEADGEFVVKHIGGDRDGNWLGNIAYDVSQRGWNIGDYKGC FT RISNYQSNAVFVAGHPDAEMDGKHFDAARAVEVDWFASFELTCDDEDGAWRIYPPPIQK FT DSSYNYTVSYGDYTEKYCEWGAVSVSVDEDNSTGTKSRIKPHKGVMMWSHPEKENSEGE FT SESETDQGKDLKTPDATTLVDFDSDDNSSSKSAESIPDNTDLNPWNAVVSSKSDRPFKQ FT EDDRVSTSSRLSGNLRRPGSGNPQLRSPLGREKAPEPSESDLDAARIKGLPPPREQPPG FT FKPTRSISTFNPEPDLVEAWRPGTGPGYSKEDVAAATILAHGSIADGRSMLDKRDQEVL FT RSRSSWGTGGFLKKMKTSSSDKAEKLAKLSTAERREYELIKNSSGKTQAALFLEQKVMD FT R" FT gene 3630..4235 FT /gene="ORF3" FT CDS 3630..4235 FT /codon_start=1 FT /gene="ORF3" FT /product="P3 coat protein" FT /db_xref="GOA:E2DRQ6" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:E2DRQ6" FT /protein_id="ADN83836.1" FT /translation="MNTVVGRRTINGRRRPRRRNRRRQNQPVVVVQAPRNTQRRRRRRR FT GGRNRTGGRIPGGPGASSETFVFSKDSLSGSSSGSITFGPSLSDCPAFSNGILKAYHEY FT KISMVLLEFISEASSTSSGSISYEVDPHCKLSTLSSTINKFGITKNGRKQFAASFINGQ FT EWHDTSEDQFRILYKGNGSSSIAGSFKVTIRCQFHNPK" FT gene 3661..4185 FT /gene="ORF4" FT CDS 3661..4185 FT /codon_start=1 FT /gene="ORF4" FT /product="P4 protein" FT /note="putative movement protein; translated by a leaky FT scanning from subgenomic RNA" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:E2DRQ7" FT /protein_id="ADN83837.1" FT /translation="MEEDDHVGATGVGKISQWLWSKPLGTHNAEDDEDEEVVIGQEDAF FT LEDQELQARHLFSQKTVSREVPQDQSRSGRLYQIARHSAMEYSRPTMNIRSQWSYWSSS FT PRPLQHPPVPSLTKWIHTVNCQPYPPRLTNSESPRMGGSNLRRLSSMDRNGMTPPRTNS FT ESYTKAMVPRR" XX SQ Sequence 5866 BP; 1498 A; 1486 C; 1452 G; 1430 T; 0 other; acaaaagaac gatagagggg ttatttaaca cttgagacat aactcgcttt gcttgagaat 60 tgtctcgtgt atgttgaatt tgatcatctg cagaatttct tccgcagctc tcattcgaca 120 cgcctctgct tcggtgagta acaatcaggt tgatttcttg ttctttctca cgcaacttcc 180 agagtacctg accttttgca actctcccga acttaacccc ttccatgatg gctttaatga 240 gtcttttctc cttcgttctc ttctttttct ccttccattt atcatcaggg gaatttcttc 300 ctctagattc gctcttcccc gtgggattcg agcagacttt atggccctct caagagccac 360 caagtatatg cccacggtta ccgatttcaa aggcaactat ctcgttgcct tgcatctgcc 420 ctcccgccga gccactggcc gagcgacccg cgaaagattt gctattcgct ctttggtcga 480 aaacaacagg ctcgagtttg agtatctctg cactcgcgga tacgaatact ttaaaagatt 540 cgctcaaact ctggcgggag aagttagaga gtgcccccaa gagcgctgga cggttcgccc 600 ttcatgtatg ggccttcgcg ctctggcaat tcgtctcatg gacctggtac ctggtgacga 660 accactttct aaccgtagcg gtcatcgtct ttctgtactt gtgcacaact tgtatggtga 720 cggcgcttcg ctttcttttt ggcggattgc taggtttcct gattcgtcat attaccattt 780 tgacgatgaa ggcggtgtgg ggctgctata ccaaagccaa atccagcagc tcctatgtga 840 aggagaaagc agttgagggg tttctgcatt ttactgtacc acaaaaaccc ccccgctcca 900 gtgtgttgct cgtgcaacat cccgacggct cccatgtagg ttatgccacc tgcatcttgt 960 tatataacgg tgagtatggt ctcctcaccg cggagcacgt atggaatact cctggagcca 1020 aagtcgtgtc taccaaaggt gaccgcaaca agattccctt ctctgaattc cgacggattt 1080 tatcagttga tggaggagat cttgtcatcc tgagagggcc ccctagttgg aacagccttc 1140 tctcgaccaa agcggttcct ttcaccaccc aatcccgtct tgagaaaggg aaaaccaccc 1200 tttattcttt tgatggtgag tggaaggcta tcaatggaga ggtggtaggc acagaaggca 1260 agtttgctgc acacctgagc aacacttcag gtggatacag tgggacccct cttttccatg 1320 ggaaatgcgt ggtcggagtc cacgttggtg gttctaagtt aaataactgg aacttggctg 1380 ctaccatccc cactgtgtca gggttaacat cgcccaatta cgcttttgag acgaccgcgc 1440 cacaaggccg ggtctttgat gaggctgcca ttgaaaatta cgagtcactg gtcaggttga 1500 ctgagagtct cgtaaacttt cagcctaaaa gcggaaagaa atgggcagat tactccgagg 1560 aggaagactt cttcgttgaa gcctccgaaa cccttcctct ccaacaaccc gtgccctcag 1620 ctccacctct ttccccgagg ttttatcctc aggtggatgc atctcttgtg gctgcgccga 1680 tggttcctga gtcggcgtcg ggaaacgaac caggcggagc cgaccgccca aacaaggcaa 1740 gtccatctgc cacccccgtc gagcagcaga acggtggtcc atccgtaatg gatcggctgg 1800 tggccgagct ggtaaacaaa atttcaacca gctcgatcga gagggaggta gccaaacaag 1860 tggcatccaa aatgcccatt ctagagaccc ctcctctaca acccaagcag cagcggcggc 1920 gtcggaagca atcaaagact tccgaaacta cttccacgcc ttctacaact ggcaagtacc 1980 agcctccgca caagaggtcc caggcttcca agcctgtggc gccctccccc agttctacta 2040 cgccaaacaa aagggcaaat cgccctgggg ggagcagctc tgcgcagaat tccctcaact 2100 ggaggaagaa accagaggct tcgggtggcc tcaattcggc ccccaagcgg agctgaagag 2160 cttgcagctg caagctgcta ggtggctgga acgcgcccag tccgcacaaa taccctccaa 2220 ggaacagagg gagcgtgtaa ttcaaaagac cgtggaagcg tacgcgtcgt gtcgtacgaa 2280 tcggcccgcg gcaaccgcta gggatgttct tagctggccg gattttcttg aagatcttaa 2340 agaggccgtg cactccctgg agctcgatgc cggtgtaggt gtaccctacg ttggatatgg 2400 tctccctact catcgtgggt gggttgaaga ccccaagctt ttgccagtcc tttctcggct 2460 agtctttgac cgattacaga agatgtcaga ggctagtttt gagtccatga ctgctgaaga 2520 gcttgtccgg gctgggctct gtgacccgat cagattattc gtgaaagggg agccgcacaa 2580 acaagctaag cttgatgaag gtcgctaccg cctcatcatg tctgtatccc tagtggatca 2640 attggtggcc cgggttttgt tccaagcgca aaacaaacgg gagattgctc tctggcgtgc 2700 aatccccagt aaacccggtt ttggactgtc tactgatgga cagacccagg agttccttaa 2760 tctcctggcg aaccagatga gtaccaccgc tgaagatgta gttgctaggt ggcgggaata 2820 cctggttccc actgattgct ccggtttcga ctggagtgta gccgactgga tgcttcacga 2880 tgagatggag gtccggaacc gcctcacggt acagaacaac ggactgacga ggcgccttcg 2940 agcctgctgg ctcaggtgca tatctaactc agttctgtgc ctttcagacg gaacgctgct 3000 ggcccaacga gtggctggag tgcaaaagag cggtagttac aacaccagct cctccaacag 3060 cagaatccgc gttatgagtg cttaccactg tggagcctca tgggcgatgg ccatgggcga 3120 tgatgccctt gaatcagtgg acacggacct atccgtgtat aaacaattag gttttaaagt 3180 cgaggtgtca ggagaactgg agttctgttc tcatatcttt ctttccccta ccctcgccat 3240 cccggtgaat agagccaaaa tgctctacaa gcttatacat ggttacaacc cgggatcagg 3300 aaatctggag gtcatctcca actacctgaa cgcctgtttc agcgttttaa acgagttgcg 3360 ttcagatcca gatttcgtag ctctcctcta ttcgtggctc gtcactccag tcttgccaca 3420 aaagaacgat acagaggatt gagcaaacct gagctagctc ttaatcttgt tgcattagag 3480 agaagcttaa agtcaagatc acagcctaac actggactac aaattcctat caggatttac 3540 agcaggtttt ctggtagcag taccaatatc aacgttaggc ttatatttaa tctacctaaa 3600 ggtttctgcc cacgtgcgac aaatagttaa tgaatacggt cgtgggtaga agaacgatca 3660 atggaagaag acgaccacgt aggcgcaaca ggcgtcggca aaatcagcca gtggttgtgg 3720 tccaagcccc tcggaacaca caacgcagaa gacgacgaag acgaggaggt cgtaatagga 3780 caggaggacg cattcctgga ggaccaggag cttcaagcga gacatttgtt ttctcaaaag 3840 acagtctctc gggaagttcc tcaggatcaa tcacgttcgg gccgtcttta tcagattgcc 3900 cggcattcag caatggaata ctcaaggcct accatgaata taagatctca atggtcttat 3960 tggagttcat ctccgaggcc tcttcaacat cctccggttc catctcttac gaagtggatc 4020 cacactgtaa attgtcaacc ctatcctcca cgattaacaa attcggaatc accaagaatg 4080 ggaggaagca atttgcggcg tctttcatca atggacagga atggcatgac acctccgagg 4140 accaattcag aatcttatac aaaggcaatg gttcctcgtc gatagctggc tcttttaagg 4200 tcacaattcg gtgccaattc cacaatccaa aataggtaga cgatggtccc cccccgccgg 4260 gtccgtctcc ccctccttct ccttcccccc ctcctccagt tccttctcgg ttctggggtt 4320 atgagggaaa tccacaatgc aagatactca cggctgaaaa caacagaaat atcgatagta 4380 ggccgttgaa tttcgtatca atgtataagt gggaagatga gaaatgggat aaagtcaatc 4440 ttcaggccgg ttactctcgc aatgatcgac gttgtatgga aacatacttc gtgatcccag 4500 cttctcgagg aaaatttcat gtttatcttg aagctgatgg cgagttcgtt gtcaaacaca 4560 ttggcggcga ccgcgatggt aactggctgg gcaatatcgc ttatgacgtt tcccagagag 4620 gttggaatat tggagattac aaaggttgca gaattagcaa ctaccagtca aacgcggttt 4680 ttgtggctgg acacccggac gcggaaatgg atggcaagca ctttgatgct gcacgcgcag 4740 tggaagtgga ttggtttgcc tcttttgagc ttacatgtga tgatgaagat ggagcttggc 4800 gaatctaccc tccccccata caaaaagata gctcgtataa ttacactgta tcctacggcg 4860 attatactga gaaatattgc gagtggggag ctgtctcggt ctctgtagac gaagacaatt 4920 ccacagggac caaatcaaga attaaaccac ataagggggt aatgatgtgg tcacacccgg 4980 agaaggaaaa ctctgaaggc gaaagcgaat ctgaaaccga tcaaggaaaa gatcttaaaa 5040 ccccagacgc cacaacttta gtcgatttcg actctgatga caattcctct tccaaatcgg 5100 cagaaagcat tccggataac acagacttga atccttggaa tgcagttgtg tcttccaagt 5160 cagatagacc atttaaacaa gaagacgatc gagtttctac aagctctcgt ttatcaggta 5220 atctgaggcg tcctggatct ggaaatcctc aactgcgctc tccacttgga agggagaaag 5280 cgccagaacc atcggaatct gaccttgacg ctgcaaggat taagggactt cctcctccac 5340 gggagcaacc cccgggtttt aaaccaacac gatcaatttc aacgtttaac ccggaaccag 5400 atttagttga ggcttggagg ccaggaacag gtcctggata ttccaaggag gatgttgctg 5460 ctgcaactat tctcgcgcat ggttctatag ctgatgggag gtcgatgcta gacaaacgtg 5520 atcaggaagt tctaagaagc cgttccagtt ggggaactgg cggattctta aagaaaatga 5580 agacatcttc ctctgacaaa gctgaaaagc tcgcgaaact gtcaaccgcc gagaggcgtg 5640 aatatgaact aataaagaac agctcgggga aaacccaagc tgcattgttt cttgagcaaa 5700 aggtgatgga taggtaagtg attaagctta tcctcgtgga tcaccccgtc gagcctgtga 5760 cgttaaacag gaacgaatcc ggaaggatag gcaacgaacc tttaatccta ttgccaggca 5820 atagccctga gacagggagg ggggactctc cctggggttt cggtgt 5866 //