ID   GU130096; SV 1; linear; genomic RNA; STD; VRL; 2399 BP.
XX
AC   GU130096;
XX
DT   02-NOV-2010 (Rel. 106, Created)
DT   02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate Al-2-06 RNA-dependent RNA polymerase (RdRp)
DE   gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene
DE   block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat
DE   protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2399
RA   Cordoba-Selles M.C.;
RT   "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT   causing necrosis in tomato";
RL   Unpublished.
XX
RN   [2]
RP   1-2399
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (24-OCT-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 7def0c7074d796f7904e4b8b8f91253f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2399
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Al-2-06"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:112229"
FT   gene            <1..449
FT                   /gene="RdRp"
FT   CDS             <1..449
FT                   /codon_start=3
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E3SX42"
FT                   /db_xref="UniProtKB/TrEMBL:E3SX42"
FT                   /protein_id="ADP00503.1"
FT                   /translation="ATRFHIDNTIKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTL
FT                   YPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQM
FT                   GDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            475..1179
FT                   /gene="TGBp1"
FT   CDS             475..1179
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q334F6"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q334F6"
FT                   /protein_id="ADP00504.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1160..1531
FT                   /gene="TGBp2"
FT   CDS             1160..1531
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ADP00505.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1383..1631
FT                   /gene="TGBp3"
FT   CDS             1383..1631
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ADP00506.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1677..2390
FT                   /gene="CP"
FT   CDS             1677..2390
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:E3SX01"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:E3SX01"
FT                   /protein_id="ADP00507.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAPSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2399 BP; 725 A; 578 C; 435 G; 661 T; 0 other;
     ctgccacaag attccatatt gacaatacta tcaagcaagt gtatgccggt gacgacatgg        60
     cattagatgg agttgtgagt gaaaagaaat cattcaggaa gttacaaaat ctactaaaac       120
     tcacttcaaa aacgctgtac ccaaaacagg ttaaagggga ttacgctgaa ttttgtggtt       180
     ggactttcac accagggggt ataattaaaa atccacttaa aatgcatgcc tcaattatgc       240
     tgcaagaagc cattggcaat ctgcacacag cagccagatc ttatgcaatt gacatgaagc       300
     attcatacca aatgggtgac caactgcatg actacctaac ccccgatgaa gctgaacaac       360
     atttcctagc tgtgagaaag cttcacaaac tccatcaagg cgaggccatg cgtcttggtg       420
     agaaaagtcc accaagatca acccattaag gggttaagtt ttccccagtt tgaaatggaa       480
     agatcaactt tgatcaattt acttctgtta cacaaatttg aacacaagat taacactgaa       540
     ggaatcattg ttgtgcacgg aattgctgga actgggaaaa ccacattgct taggacttta       600
     ttttctgcat accctagctt agttataggt tcacctaggc cttgttactt agataaagct       660
     aataaaattt cacaagtttg cctttcttgt tttccaaata ccttgtgtga cattgttgac       720
     gagtaccatc tcttagaaag ttttcctgaa ccaaaactag ccatttttgg tgacccctgt       780
     cagtgcactt acattgaaag gttgagaaca cccaactaca catccttcag aacacaccga       840
     tttggcaaat ccactgctgc tctactaaac aagttatttg atcttaacat tgagtcagtc       900
     aaagcacaag atgacacagt agaatacttt gatcctttcg cagtggaccc ctctgaacac       960
     atttctgctt cagaaaaaga agttttggaa tttgtaggtg atcaagttga gactacaagc      1020
     tctgaagaac tagctggtct cgagtttagt gaagttactt tctactgtac cacacttgct      1080
     ggtgctgttc aagaaaatcc tgccaaaacc ttcatttcac tcactagaca cacttcaaaa      1140
     ctcacaattg gtgaactaaa tgccaggtct gactcctaga gctgatctca ctgacacgta      1200
     taaaatcatt gctatagcct ttctactgtc agcttgcatt tacttccaaa acagtcatta      1260
     tcaaccagtt gcaggtgata atttgcacag actacccttt ggtggtcagt atcaagacgg      1320
     aactaagaag atttcttact ttccgcagca acaatcctac tttcactcag gaaacaagct      1380
     taatgtcctc atacttatct tcattcttac actgggtatt gtcctcacca ataaatttag      1440
     ttttagcatt agccgtaata ctcaccagca tcattgctac aacacacatt ctgcaaccca      1500
     aacaggtcaa tcagtgccag gtcatcattg atggtgcagc catagttata acaaattgtc      1560
     caaacacacc cgaagttctt aaagcaatca acttctcccc ttggaacggg ttaagttttc      1620
     ctcaattgtg aaatcatatt tgttatctag ttaaattcaa acaatttaac tcaactatgg      1680
     aaaaccaacc tacagcttct aacccatcag atgtaccacc aactgctgct caagctggtg      1740
     ccccgagccc agccgacttc tcaaatccta atacagctcc ttccctcagt gatttgaaga      1800
     agatcaaata cgtgtcaacc gtcacttcag ttgccacgcc tgctgaaatt gaggcccttg      1860
     gcaagatctt tactgccatg ggtttagcag ccaatgagac cggacctgcc atgtgggacc      1920
     tcgctcgtgc ttatgctgat gtgcaaagtt caaaatctgc acaacttata ggtgccacac      1980
     catccaaccc tgctttgtct agacgtgcac ttgctgcaca gtttgatcgt atcaatatca      2040
     cacccagaca attctgcatg tattttgcaa aaattgtttg gaacatactg ttagacagca      2100
     atgtgccacc tgccaactgg gcaaaattgg gctatcagga agataccaag tttgctgctt      2160
     ttgacttctt tgatggagtc acaaatccag ctagtctaca gcctgcagat ggcctaatca      2220
     ggcagcccaa tgaaaaagag cttgctgctc actcggttgc taaatatggt gcccttgccc      2280
     gccagaaaat atccactggt aactacatca ccacccttgg tgaagttaca cgtggtcaca      2340
     tgggcggcgc caacactatg tacgcaattg atgcacctcc tgaactttaa acactcgaa       2399
//