ID   GU130092; SV 1; linear; genomic RNA; STD; VRL; 2388 BP.
XX
AC   GU130092;
XX
DT   02-NOV-2010 (Rel. 106, Created)
DT   02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate CI-1-08 RNA-dependent RNA polymerase (RdRp)
DE   gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene
DE   block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat
DE   protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2388
RA   Cordoba-Selles M.C.;
RT   "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT   causing necrosis in tomato";
RL   Unpublished.
XX
RN   [2]
RP   1-2388
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (24-OCT-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 95b4d0c1288a0fd5f097ae88bd1c3e7a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2388
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="CI-1-08"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:112229"
FT   gene            <1..440
FT                   /gene="RdRp"
FT   CDS             <1..440
FT                   /codon_start=3
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E3SX22"
FT                   /db_xref="UniProtKB/TrEMBL:E3SX22"
FT                   /protein_id="ADP00483.1"
FT                   /translation="FHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPK
FT                   QVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQ
FT                   LHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            466..1170
FT                   /gene="TGBp1"
FT   CDS             466..1170
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:E3SX23"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:E3SX23"
FT                   /protein_id="ADP00484.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKVNKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKTQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1151..1522
FT                   /gene="TGBp2"
FT   CDS             1151..1522
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ADP00485.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1374..1622
FT                   /gene="TGBp3"
FT   CDS             1374..1622
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ADP00486.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1668..2381
FT                   /gene="CP"
FT   CDS             1668..2381
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:E3SX26"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:E3SX26"
FT                   /protein_id="ADP00487.1"
FT                   /translation="MENQPAASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2388 BP; 721 A; 569 C; 436 G; 662 T; 0 other;
     gattccatat tgacaatact gttaagcaag tgtatgccgg tgacgacatg gcattggatg        60
     gagttgtgag tgaaaagaaa tcattcagga agttacaaaa tctactaaaa ctcacttcaa       120
     aaacgctgta cccaaaacag gttaaagggg attacgctga attttgtggt tggactttca       180
     caccaggagg tataattaaa aatccactta aaatgcatgc ctcaattatg ctgcaagaag       240
     ccattggcaa tctgcacaca gcagccagat cttatgcaat tgacatgaag cattcatacc       300
     aaatgggtga ccaactgcat gactacctaa cccctgatga agctgaacaa catttcctag       360
     ctgtgagaaa gcttcacaaa ctccatcaag gcgaggccat gcgtcttggt gagaaaagtc       420
     caccaagatc aacccattaa ggggttaagt tttccccagt ttgaaatgga aagatcaact       480
     ttgatcaatt tacttctgtt acacaaattt gaacacaaga ttaacactga aggaatcatt       540
     gttgtgcacg gaattgctgg aactgggaaa accacattgc ttaggacttt attttctgca       600
     taccctagct tagttatagg ttcacctagg ccttgttact tagataaagt caataaaatt       660
     tcacaagttt gcctttcttg ttttccaaat accttgtgtg acattgttga cgagtaccat       720
     ctcttagaaa gttttcctga accaaaacta gccatttttg gtgacccctg tcagtgcact       780
     tacattgaaa ggttgagaac acccaactac acatccttca gaacacaccg atttggcaaa       840
     tccactgctg ctctactaaa caagttattt gatcttaaca ttgagtcagt caaaacacaa       900
     gacgacacag tagaatactt tgatcctttc gcagtggacc cctctgaaca catttctgct       960
     tcagaaaaag aagttttgga atttgtaggt gatcaagttg agactacaag ctctgaagaa      1020
     ctagctggtc tcgagtttag tgaagttact ttctactgta ccacacttgc tggtgctgtt      1080
     caagaaaatc ctgccaaaac cttcatttca ctcactagac acacttcaaa gctcacaatt      1140
     ggtgaactaa atgccaggtc tgactcctag agctgatctt actgacacgt ataaaatcat      1200
     tgctatagcc tttctactgt cagcttgcat ttacttccaa aacagtcatt atcaaccagt      1260
     tgcaggtgat aatttgcaca gactaccctt tggtggtcag tatcaagacg gaactaagaa      1320
     gatttcttac tttccgcagc aacaatccta ctttcactca ggaaacaagc ttaatgtcct      1380
     catacttatc ttcattctta cactgggtat tgtcctcacc aataaattta gttttagcat      1440
     tagccgtaat actcaccagc atcattgcta caacacacat tctgcaaccc aaacaggtca      1500
     atcagtgcca ggtcatcatt gatggtgcag ccatagttat aacaaattgt ccaaacacac      1560
     cagaagttct taaagcaatc aacttctccc cttggaacgg gttaagtttt cctcaattgt      1620
     gaaatcatat ttgttatcta gttaaattca aacaatttaa ctcaactatg gaaaaccaac      1680
     ctgcagcttc taacccatca gatgtaccac caactgctgc tcaagctggt gcccagagcc      1740
     cagccgactt ctcaaatcct aatacagctc cttccctaag tgatttgaag aagatcaaat      1800
     acgtgtcaac cgtcacttca gttgccacgc ctgctgaaat tgaggccctt ggcaagatct      1860
     ttactgccat gggtttagca gccaatgaga ccggacctgc catgtgggac ctcgctcgtg      1920
     cttatgctga tgtgcaaagt tcaaaatctg cacaacttat aggtgccaca ccatccaacc      1980
     ctgctttgtc tagacgtgca cttgctgcac agtttgatcg tatcaatatc acacccagac      2040
     aattctgcat gtattttgca aaaattgttt ggaacatact gttagacagc aatgtgccac      2100
     ctgccaactg ggcaaaattg ggctatcagg aagataccaa gtttgctgct tttgacttct      2160
     ttgatggagt cacaaatcca gctagtctac agcctgcaga tggcctaatc aggcagccca      2220
     atgaaaaaga gcttgctgct cactcggttg ctaaatatgg tgcccttgcc cgccagaaaa      2280
     tatccactgg taactacatc accacccttg gtgaagttac acgtggtcac atgggcggcg      2340
     ccaacactat gtacgcaatt gatgcacctc ctgaacttta acactcga                   2388
//