Dbfetch
ID GU130091; SV 1; linear; genomic RNA; STD; VRL; 2420 BP. XX AC GU130091; XX DT 02-NOV-2010 (Rel. 106, Created) DT 02-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Pepino mosaic virus isolate Mu-07 RNA-dependent RNA polymerase (RdRp) gene, DE partial cds; and triple gene block protein 1 (TGBp1), triple gene block DE protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein DE (CP) genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-2420 RA Cordoba-Selles M.C.; RT "Characterization of distinct Spanish isolates of Pepino mosaic virus RT causing necrosis in tomato"; RL Unpublished. XX RN [2] RP 1-2420 RA Cordoba-Selles M.C.; RT ; RL Submitted (24-OCT-2009) to the INSDC. RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain XX DR MD5; 429d22ecc56e6ff7f6c7b882d834f5ed. XX FH Key Location/Qualifiers FH FT source 1..2420 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="Mu-07" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="2007" FT /db_xref="taxon:112229" FT gene <1..470 FT /gene="RdRp" FT CDS <1..470 FT /codon_start=3 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="ORF1" FT /db_xref="GOA:E3SX17" FT /db_xref="UniProtKB/TrEMBL:E3SX17" FT /protein_id="ADP00478.1" FT /translation="ECSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLL FT KLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAID FT MKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT gene 496..1200 FT /gene="TGBp1" FT CDS 496..1200 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /note="ORF2" FT /db_xref="GOA:Q334F6" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q334F6" FT /protein_id="ADP00479.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 1181..1552 FT /gene="TGBp2" FT CDS 1181..1552 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /note="ORF3" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ADP00480.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 1404..1652 FT /gene="TGBp3" FT CDS 1404..1652 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /note="ORF4" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="ADP00481.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 1698..2411 FT /gene="CP" FT CDS 1698..2411 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:Q2UVL7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q2UVL7" FT /protein_id="ADP00482.1" FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 2420 BP; 727 A; 581 C; 444 G; 668 T; 0 other; ctgagtgttc gattgcatac actgccacaa gattccatat tgacaatact gttaagcaag 60 tgtatgccgg tgacgacatg gcattagatg gagttgtgag tgaaaagaaa tcattcagga 120 agttacaaaa tctactaaaa ctcacttcaa aaacgctgta cccaaaacag gttaaagggg 180 attacgctga attttgtggt tggactttca caccaggggg tataattaaa aatccactta 240 aaatgcatgc ctcaattatg ctgcaagagg ccattggcaa tctgcacaca gcagccagat 300 cttatgcaat tgacatgaag cattcatacc aaatgggtga ccaactgcat gactacctaa 360 cccccgatga agctgaacaa catttcctag ctgtgagaaa gcttcacaaa ctccatcaag 420 gcgaggccat gcgtcttggt gagaaaagtc caccaagatc aacccattaa ggggttaagt 480 tttccccagt ttgaaatgga aagatcaact ttgatcaatt tacttctgtt acacaaattt 540 gaacacaaga ttaacactga aggaatcatt gttgtgcacg gaattgctgg aactgggaaa 600 accacattgc ttaggacttt attttctgca taccctagct tagttatagg ttcacctagg 660 ccttgttact tagataaagc taataaaatt tcacaagttt gcctttcttg ttttccaaat 720 accttgtgtg acattgttga cgagtaccat ctcttagaaa gttttcctga accaaaacta 780 gccatttttg gtgacccctg tcagtgcact tacattgaaa ggttgagaac acccaactac 840 acatccttca gaacacaccg atttggcaaa tccactgctg ctctactaaa caagttattt 900 gatcttaaca ttgagtcagt caaagcacaa gacgacacag tggaatactt tgatcctttc 960 gcagtggacc cctctgaaca catttctgca tcagaaaaag aagttttgga atttgtaggt 1020 gatcaagttg agactacaag ctctgaagaa ctagctggtc tcgagtttag tgaagttact 1080 ttctactgta ccacacttgc tggtgctgtt caagaaaatc ctgccaaaac cttcatttca 1140 ctcactagac acacttcaaa gctcacaatt ggtgaactaa atgccaggtc tgactcctag 1200 agctgatctt actgacacgt ataaaatcat tgctatagcc tttctactgt cagcttgcat 1260 ttacttccaa aacagtcatt atcaaccagt tgcaggtgat aacttgcaca gactaccctt 1320 tggtggtcag tatcaagacg gaactaagaa gatttcttac tttccgcagc aacaatccta 1380 ctttcactca ggaaacaagc ttaatgtcct catacttatc ttcattctta cactgggtat 1440 tgtcctcacc aataaattta gttttagcat tagccgtaat actcaccagc atcattgcta 1500 caacacacat tctgcaaccc aaacaggtca atcagtgcca ggtcatcatt gacggtgcag 1560 ccatagttat aacaaattgt ccaaacacac ccgaagttct taaagcaatc aacttctccc 1620 cttggaacgg gttaagtttt cctcaattgt gaaatcatat ttgttattta gttaaattca 1680 aacattttaa ctcaactatg gaaaaccaac ctacagcttc taacccatca gatgtaccac 1740 caactgctgc tcaagctggt gcccagagcc cagccgactt ctcaaatcct aatacagctc 1800 cttccctaag tgatttgaag aagatcaaat acgtgtcaac tgtcacttca gttgccacgc 1860 ctgctgaaat tgaggccctt ggcaagatct ttactgccat gggtttagca gccaatgaga 1920 ccggacctgc catgtgggac ctcgctcgtg cttatgctga tgtgcaaagt tcaaaatctg 1980 cacaacttat aggtgccaca ccatccaacc ctgctttgtc tagacgcgca cttgctgcac 2040 agtttgatcg tatcaatatc acacccagac aattctgcat gtattttgcc aaaattgttt 2100 ggaacatact gttagacagc aatgtgccac ctgccaactg ggcaaaattg ggctatcagg 2160 aagataccaa gttcgctgct tttgacttct ttgatggagt cacaaatcca gctagtctac 2220 agcctgcaga tggcctaatc aggcagccca atgaaaaaga gcttgctgct cactcggttg 2280 ctaaatatgg tgcccttgcc cgccagaaaa tatccactgg taattacatc accacccttg 2340 gtgaagttac acgtggtcac atgggcggcg ccaacactat gtacgcaatt gatgcacctc 2400 ctgaacttta aacactcgaa 2420 //