ID   GU130089; SV 1; linear; genomic RNA; STD; VRL; 2421 BP.
XX
AC   GU130089;
XX
DT   02-NOV-2010 (Rel. 106, Created)
DT   02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate Al-2-07 RNA-dependent RNA polymerase (RdRp)
DE   gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene
DE   block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat
DE   protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2421
RA   Cordoba-Selles M.C.;
RT   "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT   causing necrosis in tomato";
RL   Unpublished.
XX
RN   [2]
RP   1-2421
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (24-OCT-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 96b45859ba1e464defdf1186a39fca03.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2421
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Al-2-07"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:112229"
FT   gene            <1..472
FT                   /gene="RdRp"
FT   CDS             <1..472
FT                   /codon_start=2
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E3SX07"
FT                   /db_xref="UniProtKB/TrEMBL:E3SX07"
FT                   /protein_id="ADP00468.1"
FT                   /translation="TECSIAYTATRFHINNTIKQVYAGDDMALDGVVSEKKSFRKLQNL
FT                   LKLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAI
FT                   DMKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            498..1202
FT                   /gene="TGBp1"
FT   CDS             498..1202
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:E3SX08"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:E3SX08"
FT                   /protein_id="ADP00469.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVCDQVETTSSEELSGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1183..1554
FT                   /gene="TGBp2"
FT   CDS             1183..1554
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ADP00470.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1406..1654
FT                   /gene="TGBp3"
FT   CDS             1406..1654
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ADP00471.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1700..2413
FT                   /gene="CP"
FT   CDS             1700..2413
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q2UVL7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT                   /protein_id="ADP00472.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2421 BP; 732 A; 583 C; 437 G; 669 T; 0 other;
     cactgagtgt tcgattgcat acactgccac aagattccat attaacaata ctatcaagca        60
     agtgtatgcc ggtgacgaca tggcattaga tggagttgtg agtgaaaaga aatcattcag       120
     gaagttacaa aatctactaa aactcacttc aaaaacgctg tacccaaaac aggttaaagg       180
     ggattacgct gaattttgtg gttggacttt cacaccaggg ggtataatta aaaatccact       240
     taaaatgcat gcctcaatta tgctgcaaga agccattggc aatctgcaca cagcagccag       300
     atcttatgca attgacatga agcattcata ccaaatgggt gaccaactgc atgactacct       360
     aacccccgat gaagctgaac aacatttcct agctgtgaga aagcttcaca aactccatca       420
     aggcgaggcc atgcgtcttg gtgagaaaag tccaccaaga tcaacccatt aaggggttaa       480
     gttttcccca gtttgaaatg gaaagatcaa ctttgatcaa tttacttctg ttacacaaat       540
     ttgaacacaa gattaacact gaaggaatca ttgttgtgca cggaattgct ggaactggga       600
     aaaccacatt gcttaggact ttattttctg cataccctag cttagttata ggttcaccta       660
     ggccttgtta cttagataaa gctaataaaa tttcacaagt ttgcctttct tgttttccaa       720
     ataccttgtg tgacattgtt gacgagtacc atctcttaga aagttttcct gaaccaaaac       780
     tagccatttt tggtgacccc tgtcagtgca cttacattga aaggttgaga acacccaact       840
     acacatcctt cagaacacac cgatttggca aatccactgc tgctctacta aacaagttat       900
     ttgatcttaa cattgagtca gtcaaagcac aagatgacac agtagaatac tttgatcctt       960
     tcgcagtgga cccctctgaa cacatttctg cttcagaaaa agaagttttg gaatttgtat      1020
     gtgatcaagt tgagactaca agctctgaag aactatctgg tctcgagttt agtgaagtta      1080
     ctttctactg taccacactt gctggtgctg ttcaagaaaa tcctgccaaa accttcattt      1140
     cactcactag acacacttca aaactcacaa ttggtgaact aaatgccagg tctgactcct      1200
     agagctgatc ttactgacac gtataaaatc attgctatag cctttctact gtcagcttgc      1260
     atttacttcc aaaacagtca ttatcaacca gttgcaggtg ataatttgca cagactaccc      1320
     tttggtggtc agtatcaaga cggaactaag aagatttctt actttccgca gcaacaatcc      1380
     tactttcact caggaaacaa gcttaatgtc ctcatactta tcttcattct tacactgggt      1440
     attgtcctca ccaataaatt tagttttagc attagccgta atactcacca gcatcattgc      1500
     tacaacacac attctgcaac ccaaacaggt caatcagtgc caggtcatca ttgatggtgc      1560
     agccatagtt ataacaaatt gtccaaacac acccgaagtt cttaaagcaa tcaacttctc      1620
     cccttggaac gggttaagtt ttcctcaatt gtgaaatcat atttgttatc tagttaaatt      1680
     caaacaattt aactcaacta tggaaaacca acctacagct tctaacccat cagatgtacc      1740
     accaactgct gctcaagctg gtgcccagag cccagccgac ttctcaaatc ctaatacagc      1800
     tccttccctc agtgatttga agaagatcaa atacgtgtca accgtcactt cagttgccac      1860
     gcctgctgaa attgaggccc ttggcaagat ctttactgcc atgggtttag cagccaatga      1920
     gaccggacct gccatgtggg acctcgcccg tgcttatgct gatgtgcaaa gttcaaaatc      1980
     tgcacaactt ataggtgcca caccatccaa ccctgctttg tctagacgtg cacttgctgc      2040
     acagtttgat cgtatcaata tcacacccag acaattctgc atgtatttcg caaaaattgt      2100
     ttggaacata ctgttagaca gcaatgtgcc acctgccaac tgggcaaaat tgggctatca      2160
     ggaagatacc aagtttgctg cttttgactt ctttgatgga gtcacaaatc cagctagtct      2220
     acagcctgca gatggcctaa tcaggcagcc caatgaaaaa gagcttgctg ctcactcggt      2280
     tgctaaatat ggtgcccttg cccgccagaa aatatccact ggtaactaca tcaccaccct      2340
     tggtgaagtt acacgtggtc acatgggcgg cgccaacact atgtacgcaa ttgatgcacc      2400
     tcctgaactt taaacactcg a                                                2421
//