ID   GU130088; SV 1; linear; genomic RNA; STD; VRL; 2374 BP.
XX
AC   GU130088;
XX
DT   02-NOV-2010 (Rel. 106, Created)
DT   02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate Al-1-07 RNA-dependent RNA polymerase (RdRp)
DE   gene, partial cds; triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), and triple gene block protein 3 (TGBp3) genes, complete
DE   cds; and coat protein (CP) gene, partial cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2374
RA   Cordoba-Selles M.C.;
RT   "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT   causing necrosis in tomato";
RL   Unpublished.
XX
RN   [2]
RP   1-2374
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (24-OCT-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 049c91c3d3b30ce1f47a13341d9ad68c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2374
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Al-1-07"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:112229"
FT   gene            <1..443
FT                   /gene="RdRp"
FT   CDS             <1..443
FT                   /codon_start=3
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E3SX02"
FT                   /db_xref="UniProtKB/TrEMBL:E3SX02"
FT                   /protein_id="ADP00463.1"
FT                   /translation="RFHIDNTIKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYP
FT                   KQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGD
FT                   QLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            468..1172
FT                   /gene="TGBp1"
FT   CDS             468..1172
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q334F6"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q334F6"
FT                   /protein_id="ADP00464.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1153..1524
FT                   /gene="TGBp2"
FT   CDS             1153..1524
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ADP00465.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1376..1624
FT                   /gene="TGBp3"
FT   CDS             1376..1624
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ADP00466.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1670..>2374
FT                   /gene="CP"
FT   CDS             1670..>2374
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:E3SX06"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:E3SX06"
FT                   /protein_id="ADP00467.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAPSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPP"
XX
SQ   Sequence 2374 BP; 715 A; 569 C; 433 G; 657 T; 0 other;
     caagattcca tattgacaat actatcaagc aagtgtatgc cggtgacgac atggcattag        60
     atggagttgt gagtgaaaag aaatcattca ggaagttaca aaatctacta aaactcactt       120
     caaaaacgct gtacccaaaa caggttaaag gggattacgc tgaattttgt ggttggactt       180
     tcacaccagg gggtataatt aaaaatccac ttaaaatgca tgcctcaatt atgctgcaag       240
     aagccattgg caatctgcac acagcagcca gatcttatgc aattgacatg aagcattcat       300
     accaaatggg tgaccaactg catgactacc taacccccga tgaagctgaa caacatttcc       360
     tagctgtgag aaagcttcac aaactccatc aaggcgaggc catgcgtctt ggtgagaaaa       420
     gtccaccaag atcaacccat taaggggtta agttttccca gtttgaaatg gaaagatcaa       480
     ctttgatcaa tttacttctg ttacacaaat ttgaacacaa gattaacact gaaggaatca       540
     ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact ttattttctg       600
     cataccctag cttagttata ggttcaccta ggccttgtta cttagataaa gctaataaaa       660
     tttcacaagt ttgcctttct tgttttccaa ataccttgtg tgacattgtt gacgagtacc       720
     atctcttaga aagttttcct gaaccaaaac tagccatttt tggcgacccc tgtcagtgca       780
     cttacattga aaggttgaga acacccaact acacatcctt cagaacacac cgatttggca       840
     aatccactgc tgctctacta aacaagttat ttgatcttaa cattgagtca gtcaaagcac       900
     aagatgacac agtagaatac tttgatcctt tcgcagtgga cccctctgaa cacatttctg       960
     cttcagaaaa agaagttttg gaatttgtag gtgatcaagt tgagactaca agctctgaag      1020
     aactagctgg tctcgagttt agtgaagtta ctttctactg taccacactt gctggtgctg      1080
     ttcaagaaaa tcctgccaaa accttcattt cactcactag acacacttca aaactcacaa      1140
     ttggtgaact aaatgccagg tctgactcct agagctgatc ttactgacac gtataaaatc      1200
     attgctatag cctttctact gtcagcttgc atttacttcc aaaacagtca ttatcaacca      1260
     gttgcaggtg ataatttgca cagactaccc tttggtggtc agtatcaaga cggaactaag      1320
     aagatttctt actttccgca gcaacaatcc tactttcact caggaaacaa gcttaatgtc      1380
     ctcatactta tcttcattct tacactgggt attgtcctca ccaataaatt tagttttagc      1440
     attagccgta atactcacca gcatcattgc tacaacacac attctgcaac ccaaacaggt      1500
     caatcagtgc caggtcatca ttgatggtgc agccatagtt ataacaaatt gtccaaacac      1560
     acccgaagtt cttaaagcaa tcaacttctc cccttggaac gggttaagtt ttcctcaatt      1620
     gtgaaatcat atttgttatc tagttaaatt caaacaattt aactcaacta tggaaaacca      1680
     acctacagct tctaacccat cagatgtacc accaactgct gctcaagctg gtgccccgag      1740
     cccagccgac ttctcaaatc ctaatacagc tccttccctc agtgatttga agaagatcaa      1800
     atacgtgtca accgtcactt cagttgccac gcctgctgaa attgaggccc ttggcaagat      1860
     ctttactgcc atgggtttag cagccaatga gaccggacct gccatgtggg acctcgctcg      1920
     tgcttatgct gatgtgcaaa gttcaaaatc tgcacaactt ataggtgcca caccatccaa      1980
     ccctgctttg tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag      2040
     acaattctgc atgtattttg caaaaattgt ttggaacata ctgttagaca gcaatgtgcc      2100
     acctgccaac tgggcaaaat tgggctatca ggaagatacc aagtttgctg cttttgactt      2160
     ctttgatgga gtcacaaatc cagctagtct acagcctgca gatggcctaa tcaggcagcc      2220
     caatgaaaaa gagcttgctg ctcactcggt tgctaaatat ggtgcccttg cccgccagaa      2280
     aatatccact ggtaattaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg      2340
     cgccaacact atgtacgcaa ttgatgcgcc tcct                                  2374
//