ID   GU130087; SV 1; linear; genomic RNA; STD; VRL; 2409 BP.
XX
AC   GU130087;
XX
DT   02-NOV-2010 (Rel. 106, Created)
DT   02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate Al-06 RNA-dependent RNA polymerase (RdRp) gene,
DE   partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE   (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2409
RA   Cordoba-Selles M.C.;
RT   "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT   causing necrosis in tomato";
RL   Unpublished.
XX
RN   [2]
RP   1-2409
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (24-OCT-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; ea26a02af6a3360f11bc5293c9637aba.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2409
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Al-06"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:112229"
FT   gene            <1..460
FT                   /gene="RdRp"
FT   CDS             <1..460
FT                   /codon_start=2
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E3SWZ7"
FT                   /db_xref="UniProtKB/TrEMBL:E3SWZ7"
FT                   /protein_id="ADP00458.1"
FT                   /translation="IAYTATRFHIDNTIKQVYAGDDMALDGVVSEKKSFRKLQNLLKLT
FT                   SKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKH
FT                   SYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            486..1190
FT                   /gene="TGBp1"
FT   CDS             486..1190
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q334F6"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q334F6"
FT                   /protein_id="ADP00459.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1171..1542
FT                   /gene="TGBp2"
FT   CDS             1171..1542
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ADP00460.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1394..1642
FT                   /gene="TGBp3"
FT   CDS             1394..1642
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ADP00461.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1688..2401
FT                   /gene="CP"
FT   CDS             1688..2401
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:E3SX01"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:E3SX01"
FT                   /protein_id="ADP00462.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAPSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2409 BP; 728 A; 580 C; 437 G; 664 T; 0 other;
     gattgcatac actgccacaa gattccatat tgacaatact atcaagcaag tgtatgccgg        60
     tgacgacatg gcattagatg gagttgtgag tgaaaagaaa tcattcagga agttacaaaa       120
     tctactaaaa ctcacttcaa aaacgctgta cccaaaacag gttaaagggg attacgctga       180
     attttgtggt tggactttca caccaggggg tataattaaa aatccactta aaatgcatgc       240
     ctcaattatg ctgcaagaag ccattggcaa tctgcacaca gcagccagat cttatgcaat       300
     tgacatgaag cattcatacc aaatgggtga ccaactgcat gactacctaa cccccgatga       360
     agctgaacaa catttcctag ctgtgagaaa gcttcacaaa ctccatcaag gcgaggccat       420
     gcgtcttggt gagaaaagtc caccaagatc aacccattaa ggggttaagt tttccccagt       480
     ttgaaatgga aagatcaact ttgatcaatt tacttctgtt acacaaattt gaacacaaga       540
     ttaacactga aggaatcatt gttgtgcacg gaattgctgg aactgggaaa accacattgc       600
     ttaggacttt attttctgca taccctagct tagttatagg ttcacctagg ccttgttact       660
     tagataaagc taataaaatt tcacaagttt gcctttcttg ttttccaaat accttgtgtg       720
     acattgttga cgagtaccat ctcttagaaa gttttcctga accaaaacta gccatttttg       780
     gtgacccctg tcagtgcact tacattgaaa ggttgagaac acccaactac acatccttca       840
     gaacacaccg atttggcaaa tccactgctg ctctactaaa caagttattt gatcttaaca       900
     ttgagtcagt caaagcacaa gatgacacag tagaatactt tgatcctttc gcagtggacc       960
     cctctgaaca catttctgct tcagaaaaag aagttttgga atttgtaggt gatcaagttg      1020
     agactacaag ctctgaagaa ctagctggtc tcgagtttag tgaagttact ttctactgta      1080
     ccacacttgc tggtgctgtt caagaaaatc ctgccaaaac cttcatttca ctcactagac      1140
     acacttcaaa actcacaatt ggtgaactaa atgccaggtc tgactcctag agctgatctt      1200
     actgacacgt ataaaatcat tgctatagcc tttctactgt cagcttgcat ttacttccaa      1260
     aacagtcatt atcaaccagt tgcaggtgat aatttgcaca gactaccctt tggtggtcag      1320
     tatcaagacg gaactaagaa gatttcttac tttccgcagc aacaatccta ctttcactca      1380
     ggaaacaagc ttaatgtcct catacttatc ttcattctta cactgggtat tgtcctcacc      1440
     aataaattta gttttagcat tagccgtaat actcaccagc atcattgcta caacacacat      1500
     tctgcaaccc aaacaggtca atcagtgcca ggtcatcatt gatggtgcag ccatagttat      1560
     aacaaattgt ccaaacacac ccgaagttct taaagcaatc aacttctccc cttggaacgg      1620
     gttaagtttt cctcaattgt gaaatcatat ttgttatcta gttaaattca aacaatttaa      1680
     ctcaactatg gaaaaccaac ctacagcttc taacccatca gatgtaccac caactgctgc      1740
     tcaagctggt gccccgagcc cagccgactt ctcaaatcct aatacagctc cttccctcag      1800
     tgatttgaag aagatcaaat acgtgtcaac cgtcacttca gttgccacgc ctgctgaaat      1860
     tgaggccctt ggcaagatct ttactgccat gggtttagca gccaatgaga ccggacctgc      1920
     catgtgggac ctcgctcgtg cttatgctga tgtgcaaagt tcaaaatctg cacaacttat      1980
     aggtgccaca ccatccaacc ccgctttgtc tagacgtgca cttgctgcac agtttgatcg      2040
     tatcaatatc acacccagac aattctgcat gtattttgca aaaattgttt ggaacatact      2100
     gttagacagc aatgtgccac ctgccaactg ggcaaaattg ggctatcagg aagataccaa      2160
     gtttgctgct tttgacttct ttgatggagt cacaaatcca gctagtctac agcctgcaga      2220
     tggcctaatc aggcagccca atgaaaaaga gcttgctgct cactcggttg ctaaatatgg      2280
     tgcccttgcc cgccagaaaa tatccactgg taactacatc accacccttg gtgaagttac      2340
     acgtggtcac atgggcggcg ccaacactat gtacgcaatt gatgcacctc ctgaacttta      2400
     aacactcga                                                              2409
//