ID   GU130086; SV 1; linear; genomic RNA; STD; VRL; 2385 BP.
XX
AC   GU130086;
XX
DT   02-NOV-2010 (Rel. 106, Created)
DT   02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate Mu-05 RNA-dependent RNA polymerase (RdRp) gene,
DE   partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE   (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2385
RA   Cordoba-Selles M.C.;
RT   "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT   causing necrosis in tomato";
RL   Unpublished.
XX
RN   [2]
RP   1-2385
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (23-OCT-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; c10933affa997069ecc30c0a7f52f607.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2385
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Mu-05"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:112229"
FT   gene            <1..436
FT                   /gene="RdRp"
FT   CDS             <1..436
FT                   /codon_start=2
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E3SWZ6"
FT                   /db_xref="UniProtKB/TrEMBL:E3SWZ6"
FT                   /protein_id="ADP00453.1"
FT                   /translation="HIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQ
FT                   VKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQL
FT                   HDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            462..1166
FT                   /gene="TGBp1"
FT   CDS             462..1166
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q334F6"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q334F6"
FT                   /protein_id="ADP00454.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1147..1518
FT                   /gene="TGBp2"
FT   CDS             1147..1518
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ADP00455.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1370..1618
FT                   /gene="TGBp3"
FT   CDS             1370..1618
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ADP00456.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1664..2377
FT                   /gene="CP"
FT   CDS             1664..2377
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q2UVL7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT                   /protein_id="ADP00457.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2385 BP; 718 A; 570 C; 437 G; 660 T; 0 other;
     ccatattgac aatactgtta agcaagtgta tgccggtgac gacatggcat tagatggagt        60
     tgtgagtgaa aagaaatcat tcaggaagtt acaaaatcta ctaaaactca cttcaaaaac       120
     gctgtaccca aaacaggtta aaggggatta cgctgaattt tgtggttgga ctttcacacc       180
     agggggtata attaaaaatc cacttaaaat gcatgcctca attatgctgc aagaggccat       240
     tggcaatctg cacacagctg ccagatctta tgcaattgac atgaagcatt cataccaaat       300
     gggtgaccaa ctgcatgact acctaacccc cgatgaagct gaacaacatt tcctagctgt       360
     gagaaagctt cacaaactcc atcaaggcga ggccatgcgt cttggggaga aaagtccacc       420
     aagatcaacc cattaagggg ttaagttttc cccagtttga aatggaaaga tcaactttga       480
     tcaatttact tctgttacac aaatttgaac acaagattaa cactgaagga atcattgttg       540
     tgcacggaat tgctggaact gggaaaacca cattgcttag gactttattt tctgcatacc       600
     ctagcttagt tataggttca cctaggcctt gttacttaga taaagctaat aaaatttcgc       660
     aagtttgcct ttcttgtttt ccaaatacct tgtgtgacat tgttgacgag taccatctct       720
     tagaaagttt tcctgaacca aaactagcca tttttggtga cccctgtcag tgcacttaca       780
     ttgaaaggtt gagaacacct aactacacat ccttcagaac acaccgattt ggcaaatcca       840
     ctgctgctct actaaacaag ttatttgatc ttaacattga gtcagtcaaa gcacaagacg       900
     acacagtaga atactttgat cctttcgcag tggacccctc tgaacacatt tctgcttcag       960
     aaaaagaagt tttggaattt gtaggtgatc aagttgagac tacaagctct gaagaactag      1020
     ctggtctcga gtttagtgaa gttactttct actgtaccac acttgctggt gctgttcaag      1080
     aaaatcctgc caaaaccttc atttcactca ctagacacac ttcaaagctc acaattggtg      1140
     aactaaatgc caggtctgac tcctagagct gatcttactg acacatataa aatcattgct      1200
     atagcctttc tactgtcagc ttgcatttac ttccaaaaca gtcattatca accagttgca      1260
     ggtgataact tgcacagact accctttggt ggtcagtatc aagacggaac taagaagatt      1320
     tcttactttc cgcagcaaca atcctacttt cactcaggaa acaagcttaa tgtcctcata      1380
     cttatcttca ttcttacact gggtattgtc ctcaccaata aatttagttt tagcattagc      1440
     cgtaatactc accagcatca ttgctacaac acacattctg caacccaaac aggtcaatca      1500
     gtgccaggtc atcattgacg gtgcagccat agttataaca aattgtccaa acacacccga      1560
     agttcttaaa gcaatcaact tctccccttg gaacgggtta agttttcctc aattgtgaaa      1620
     tcatatttgt tatctagtta aattcaaaca atttaactca actatggaaa accaacctac      1680
     agcttctaac ccatcagatg taccaccaac tgctgctcaa gctggtgccc agagcccagc      1740
     cgacttctca aatcctaata cagctccttc cctaagtgat ttgaagaaga tcaaatacgt      1800
     gtcaactgtc acttcagttg ccacgcctgc tgaaattgag gcccttggca agatctttac      1860
     tgccatgggt ttagcagcca atgagaccgg acctgccatg tgggacctcg ctcgtgctta      1920
     tgctgatgtg caaagttcaa aatctgcaca acttataggt gccacaccat ccaaccctgc      1980
     tttgtctaga cgtgcacttg ctgcacagtt tgatcgtatc aatatcacac ccagacaatt      2040
     ctgcatgtat tttgcaaaaa ttgtttggaa catactgtta gacagcaatg tgccacctgc      2100
     caactgggca aaattgggct atcaggaaga taccaagttt gctgcttttg acttctttga      2160
     tggagtcaca aatccagcta gtctacagcc tgcagatggc ctaatcaggc agcccaatga      2220
     aaaagagctt gctgctcact cggttgctaa atatggtgcc cttgcccgcc agaaaatatc      2280
     cactggtaac tacattacca cccttggtga agttacacgt ggtcacatgg gcggcgccaa      2340
     cactatgtac gcaattgatg cacctcctga actttaaaca ctcga                      2385
//