Dbfetch
ID GU130086; SV 1; linear; genomic RNA; STD; VRL; 2385 BP. XX AC GU130086; XX DT 02-NOV-2010 (Rel. 106, Created) DT 02-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Pepino mosaic virus isolate Mu-05 RNA-dependent RNA polymerase (RdRp) gene, DE partial cds; and triple gene block protein 1 (TGBp1), triple gene block DE protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein DE (CP) genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-2385 RA Cordoba-Selles M.C.; RT "Characterization of distinct Spanish isolates of Pepino mosaic virus RT causing necrosis in tomato"; RL Unpublished. XX RN [2] RP 1-2385 RA Cordoba-Selles M.C.; RT ; RL Submitted (23-OCT-2009) to the INSDC. RL IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain XX DR MD5; c10933affa997069ecc30c0a7f52f607. XX FH Key Location/Qualifiers FH FT source 1..2385 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="Mu-05" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="2005" FT /db_xref="taxon:112229" FT gene <1..436 FT /gene="RdRp" FT CDS <1..436 FT /codon_start=2 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="ORF1" FT /db_xref="GOA:E3SWZ6" FT /db_xref="UniProtKB/TrEMBL:E3SWZ6" FT /protein_id="ADP00453.1" FT /translation="HIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQ FT VKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQL FT HDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT gene 462..1166 FT /gene="TGBp1" FT CDS 462..1166 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /note="ORF2" FT /db_xref="GOA:Q334F6" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q334F6" FT /protein_id="ADP00454.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT gene 1147..1518 FT /gene="TGBp2" FT CDS 1147..1518 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /note="ORF3" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ADP00455.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 1370..1618 FT /gene="TGBp3" FT CDS 1370..1618 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /note="ORF4" FT /db_xref="GOA:Q334E8" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q334E8" FT /protein_id="ADP00456.1" FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 1664..2377 FT /gene="CP" FT CDS 1664..2377 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="ORF5" FT /db_xref="GOA:Q2UVL7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q2UVL7" FT /protein_id="ADP00457.1" FT /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 2385 BP; 718 A; 570 C; 437 G; 660 T; 0 other; ccatattgac aatactgtta agcaagtgta tgccggtgac gacatggcat tagatggagt 60 tgtgagtgaa aagaaatcat tcaggaagtt acaaaatcta ctaaaactca cttcaaaaac 120 gctgtaccca aaacaggtta aaggggatta cgctgaattt tgtggttgga ctttcacacc 180 agggggtata attaaaaatc cacttaaaat gcatgcctca attatgctgc aagaggccat 240 tggcaatctg cacacagctg ccagatctta tgcaattgac atgaagcatt cataccaaat 300 gggtgaccaa ctgcatgact acctaacccc cgatgaagct gaacaacatt tcctagctgt 360 gagaaagctt cacaaactcc atcaaggcga ggccatgcgt cttggggaga aaagtccacc 420 aagatcaacc cattaagggg ttaagttttc cccagtttga aatggaaaga tcaactttga 480 tcaatttact tctgttacac aaatttgaac acaagattaa cactgaagga atcattgttg 540 tgcacggaat tgctggaact gggaaaacca cattgcttag gactttattt tctgcatacc 600 ctagcttagt tataggttca cctaggcctt gttacttaga taaagctaat aaaatttcgc 660 aagtttgcct ttcttgtttt ccaaatacct tgtgtgacat tgttgacgag taccatctct 720 tagaaagttt tcctgaacca aaactagcca tttttggtga cccctgtcag tgcacttaca 780 ttgaaaggtt gagaacacct aactacacat ccttcagaac acaccgattt ggcaaatcca 840 ctgctgctct actaaacaag ttatttgatc ttaacattga gtcagtcaaa gcacaagacg 900 acacagtaga atactttgat cctttcgcag tggacccctc tgaacacatt tctgcttcag 960 aaaaagaagt tttggaattt gtaggtgatc aagttgagac tacaagctct gaagaactag 1020 ctggtctcga gtttagtgaa gttactttct actgtaccac acttgctggt gctgttcaag 1080 aaaatcctgc caaaaccttc atttcactca ctagacacac ttcaaagctc acaattggtg 1140 aactaaatgc caggtctgac tcctagagct gatcttactg acacatataa aatcattgct 1200 atagcctttc tactgtcagc ttgcatttac ttccaaaaca gtcattatca accagttgca 1260 ggtgataact tgcacagact accctttggt ggtcagtatc aagacggaac taagaagatt 1320 tcttactttc cgcagcaaca atcctacttt cactcaggaa acaagcttaa tgtcctcata 1380 cttatcttca ttcttacact gggtattgtc ctcaccaata aatttagttt tagcattagc 1440 cgtaatactc accagcatca ttgctacaac acacattctg caacccaaac aggtcaatca 1500 gtgccaggtc atcattgacg gtgcagccat agttataaca aattgtccaa acacacccga 1560 agttcttaaa gcaatcaact tctccccttg gaacgggtta agttttcctc aattgtgaaa 1620 tcatatttgt tatctagtta aattcaaaca atttaactca actatggaaa accaacctac 1680 agcttctaac ccatcagatg taccaccaac tgctgctcaa gctggtgccc agagcccagc 1740 cgacttctca aatcctaata cagctccttc cctaagtgat ttgaagaaga tcaaatacgt 1800 gtcaactgtc acttcagttg ccacgcctgc tgaaattgag gcccttggca agatctttac 1860 tgccatgggt ttagcagcca atgagaccgg acctgccatg tgggacctcg ctcgtgctta 1920 tgctgatgtg caaagttcaa aatctgcaca acttataggt gccacaccat ccaaccctgc 1980 tttgtctaga cgtgcacttg ctgcacagtt tgatcgtatc aatatcacac ccagacaatt 2040 ctgcatgtat tttgcaaaaa ttgtttggaa catactgtta gacagcaatg tgccacctgc 2100 caactgggca aaattgggct atcaggaaga taccaagttt gctgcttttg acttctttga 2160 tggagtcaca aatccagcta gtctacagcc tgcagatggc ctaatcaggc agcccaatga 2220 aaaagagctt gctgctcact cggttgctaa atatggtgcc cttgcccgcc agaaaatatc 2280 cactggtaac tacattacca cccttggtga agttacacgt ggtcacatgg gcggcgccaa 2340 cactatgtac gcaattgatg cacctcctga actttaaaca ctcga 2385 //