ID   GU130083; SV 1; linear; genomic RNA; STD; VRL; 2420 BP.
XX
AC   GU130083;
XX
DT   02-NOV-2010 (Rel. 106, Created)
DT   02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate Al-4-05 RNA-dependent RNA polymerase (RdRp)
DE   gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene
DE   block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat
DE   protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2420
RA   Cordoba-Selles M.C.;
RT   "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT   causing necrosis in tomato";
RL   Unpublished.
XX
RN   [2]
RP   1-2420
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (23-OCT-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 61d2c907c17e23e38750a7b0b8ada00d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2420
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Al-4-05"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:112229"
FT   gene            <1..471
FT                   /gene="RdRp"
FT   CDS             <1..471
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E3SWX7"
FT                   /db_xref="UniProtKB/TrEMBL:E3SWX7"
FT                   /protein_id="ADP00438.1"
FT                   /translation="TECSIAYTATRFHIDNTIKQVYAGDDMALDGVVSEKKSFRKLQNL
FT                   LKLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAI
FT                   DMKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            496..1200
FT                   /gene="TGBp1"
FT   CDS             496..1200
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q334F6"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q334F6"
FT                   /protein_id="ADP00439.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1181..1552
FT                   /gene="TGBp2"
FT   CDS             1181..1552
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ADP00440.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1404..1652
FT                   /gene="TGBp3"
FT   CDS             1404..1652
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ADP00441.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1698..2411
FT                   /gene="CP"
FT   CDS             1698..2411
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q2UVL7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT                   /protein_id="ADP00442.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2420 BP; 732 A; 579 C; 441 G; 668 T; 0 other;
     actgagtgtt cgattgcata cactgccaca agattccata ttgacaatac tatcaagcaa        60
     gtgtatgccg gtgacgacat ggcattagat ggagttgtga gtgaaaagaa atcattcagg       120
     aagttacaaa atctactaaa actcacttca aaaacgctgt acccaaaaca ggttaaaggg       180
     gattacgctg aattttgtgg ttggactttc acaccagggg gtataattaa aaatccactt       240
     aaaatgcatg cctcaattat gctgcaagaa gccattggca atctgcacac agcagccaga       300
     tcttatgcaa ttgacatgaa gcattcatac caaatgggtg accaactgca tgactaccta       360
     acccccgatg aagctgaaca acatttccta gctgtgagaa agcttcacaa actccatcaa       420
     ggcgaggcca tgcgtcttgg tgagaaaagt ccaccaagat caacccatta aggggttaag       480
     ttttcccagt ttgaaatgga aagatcaact ttgatcaatt tacttctgtt acacaaattt       540
     gaacacaaga ttaacactga aggaatcatt gttgtgcacg gaattgctgg aactgggaaa       600
     accacattgc ttaggacttt attttctgca taccctagct tagttatagg ttcacctagg       660
     ccttgttact tagataaagc taataaaatt tcacaagttt gcctttcttg ttttccaaat       720
     accttgtgtg acattgttga cgagtaccat ctcttagaaa gttttcctga accaaaacta       780
     gccatttttg gtgacccctg tcagtgcact tacattgaaa ggttgagaac acccaactac       840
     acatccttca gaacacaccg atttggcaaa tccactgctg ctctactaaa caagttattt       900
     gatcttaaca ttgagtcagt caaagcacaa gatgacacag tagaatactt tgatcctttc       960
     gcagtggacc cctctgaaca catttctgct tcagaaaaag aagttttgga atttgtaggt      1020
     gatcaagttg agactacaag ctctgaagaa ctagctggtc tcgagtttag tgaagttact      1080
     ttctactgta ccacacttgc tggtgctgtt caagaaaatc ctgccaaaac cttcatttca      1140
     ctcactagac acacttcaaa actcacaatt ggtgaactaa atgccaggtc tgactcctag      1200
     agctgatctt actgacacgt ataaaatcat tgctatagcc tttctactgt cagcttgcat      1260
     ttacttccaa aacagtcatt atcaaccagt tgcaggtgat aatttgcaca gactaccctt      1320
     tggtggtcag tatcaagacg gaactaagaa gatttcttac tttccgcagc aacaatccta      1380
     ctttcactca ggaaacaagc ttaatgtcct catacttatc ttcattctta cactgggtat      1440
     tgtcctcacc aataaattta gttttagcat tagccgtaat actcaccagc atcattgcta      1500
     caacacacat tctgcaaccc aaacaggtca atcagtgcca ggtcatcatt gatggtgcag      1560
     ccatagttat aacaaattgt ccaaacacac ccgaagttct taaagcaatc aacttctccc      1620
     cttggaacgg gttaagtttt cctcaattgt gaaatcatat ttgttatcta gttaaattca      1680
     aacaatttaa ctcaactatg gaaaaccaac ctacagcttc taacccatca gatgtaccac      1740
     caactgctgc tcaagctggt gcccagagcc cagccgactt ctcaaatcct aatacagctc      1800
     cttccctcag tgatttgaag aagatcaaat acgtgtcaac cgtcacttca gttgccacgc      1860
     ctgctgaaat tgaggccctt ggcaagatct ttactgccat gggtttagca gccaatgaga      1920
     ccggacctgc catgtgggac ctcgctcgtg cttatgctga tgtgcaaagt tcaaaatctg      1980
     cacaacttat aggtgccaca ccatccaacc ctgctttgtc tagacgggca cttgctgcac      2040
     agtttgatcg tatcaatatc acacccagac aattctgcat gtattttgca aaaattgttt      2100
     ggaacatact gttagacagc aatgtgccac ctgccaactg ggcaaaattg ggctatcagg      2160
     aagataccaa gtttgctgct tttgacttct ttgatggagt cacaaatcca gctagtctac      2220
     agcctgcaga tggcctaatc aggcagccca atgaaaaaga gcttgctgct cactcggttg      2280
     ctaaatatgg tgcccttgcc cgccagaaaa tatccactgg taactacatc accacccttg      2340
     gtgaagttac acgtggtcac atgggcggcg ccaacactat gtacgcaatt gatgcacctc      2400
     ctgaacttta aacactcgaa                                                  2420
//