ID   GU130081; SV 1; linear; genomic RNA; STD; VRL; 2424 BP.
XX
AC   GU130081;
XX
DT   02-NOV-2010 (Rel. 106, Created)
DT   02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate Gr-05 RNA-dependent RNA polymerase (RdRp) gene,
DE   partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE   (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2424
RA   Cordoba-Selles M.C.;
RT   "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT   causing necrosis in tomato";
RL   Unpublished.
XX
RN   [2]
RP   1-2424
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (22-OCT-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; c89839cc511d7b4dd279b3799091c6b4.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2424
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Gr-05"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:112229"
FT   gene            <1..474
FT                   /gene="RdRp"
FT   CDS             <1..474
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E3SWW7"
FT                   /db_xref="UniProtKB/TrEMBL:E3SWW7"
FT                   /protein_id="ADP00428.1"
FT                   /translation="NTECSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQN
FT                   LLKLTSKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYA
FT                   IDMKHSYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            500..1204
FT                   /gene="TGBp1"
FT   CDS             500..1204
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q334F6"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q334F6"
FT                   /protein_id="ADP00429.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1185..1556
FT                   /gene="TGBp2"
FT   CDS             1185..1556
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ADP00430.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            1408..1656
FT                   /gene="TGBp3"
FT   CDS             1408..1656
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ADP00431.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1702..2415
FT                   /gene="CP"
FT   CDS             1702..2415
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:E3SWX1"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:E3SWX1"
FT                   /protein_id="ADP00432.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFIAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKEIAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2424 BP; 735 A; 577 C; 443 G; 669 T; 0 other;
     aacactgagt gttcaattgc atacactgcc acaagattcc atattgacaa tactgttaag        60
     caagtgtatg ccggtgacga catggcatta gatggagttg tgagtgaaaa gaaatcattc       120
     aggaagttac aaaatttact aaaactcact tcaaaaacgc tgtacccaaa acaggttaaa       180
     ggggattacg ctgaattttg tggttggact ttcacaccag ggggtataat taaaaatcca       240
     cttaaaatgc atgcctcaat tatgctgcaa gaggccattg gcaatctgca cacagcagcc       300
     agatcttatg caattgacat gaagcattca taccaaatgg gtgaccaact gcatgactac       360
     ctaacacccg atgaagctga acaacatttc ctagctgtga gaaagcttca caaactccat       420
     caaggcgagg ccatgcgtct tggggagaaa agtccaccaa gatcaaccca ttaaggggtt       480
     aagtttttcc cagtttgaaa tggaaagatc aactttgatc aatttacttc tgttacacaa       540
     atttgaacac aagattaaca ctgaaggaat cattgttgtg cacggaattg ctggaactgg       600
     gaaaaccaca ttgcttagga ctttattttc tgcataccct agcctagtta taggttcacc       660
     taggccttgt tacttagata aagctaataa aatttcacaa gtttgccttt cttgttttcc       720
     aaataccttg tgtgacattg ttgacgagta ccatctctta gaaagttttc ctgaaccaaa       780
     actagccatt tttggtgacc cctgtcagtg cacttacatt gaaaggttga gaacacccaa       840
     ctacacatcc ttcagaacac accgatttgg caaatccact gctgctctac taaacaagtt       900
     atttgatctt aacattgagt cagtcaaagc acaagacgac acagtagaat actttgatcc       960
     tttcgcagtg gacccctctg aacacatttc tgcttcagaa aaagaagttt tggaatttgt      1020
     aggtgatcaa gttgagacta caagctctga agaactagct ggtctcgagt ttagtgaagt      1080
     tactttctac tgtaccacac ttgctggtgc tgttcaagaa aatcctgcca aaaccttcat      1140
     ttcactcact agacacactt caaagctcac aattggtgaa ctaaatgcca ggtctgactc      1200
     ctagagctga tcttactgac acgtataaaa tcattgctat agcctttcta ctgtcagctt      1260
     gcatttactt ccaaaacagt cattatcaac cagttgcagg tgataacttg cacagactac      1320
     cctttggtgg tcagtatcaa gacggaacta agaagatttc ttactttccg cagcaacaat      1380
     cctactttca ctcaggaaac aagcttaatg tcctcatact tatcttcatt cttacactgg      1440
     gtattgtcct caccaataaa tttagtttta gcattagccg taatactcac cagcatcatt      1500
     gctacaacac acattctgca acccaaacag gtcaatcagt gccaggtcat cattgacggt      1560
     gcagccatag ttataacaaa ttgtccaaac acacccgaag ttcttaaagc aatcaacttc      1620
     tccccttgga acgggttaag ttttcctcaa ttgtgaaatc atatttgtta tctagttaaa      1680
     ttcaaacaat ttaactcaac tatggaaaac caacctacag cttctaaccc atcagatgta      1740
     ccaccaactg ctgctcaagc tggtgcccag agcccagccg acttctcaaa tcctaataca      1800
     gctccttccc taagtgattt gaagaagatc aaatacgtgt caactgtcac ttcagttgcc      1860
     acgcctgctg aaattgaggc ccttggcaag atctttattg ccatgggttt agcagccaat      1920
     gagaccggac ctgccatgtg ggacctcgct cgtgcttatg ctgatgtgca aagttcaaaa      1980
     tctgcacaac ttataggtgc cacaccatcc aaccctgctt tgtctagacg tgcacttgct      2040
     gcacagtttg atcgtatcaa tatcacaccc agacaattct gcatgtattt tgcaaaaatt      2100
     gtttggaaca tactgttaga cagcaatgtg ccacctgcca actgggcaaa attgggctat      2160
     caggaagata ccaagtttgc tgcttttgac ttctttgatg gagtcacaaa tccagctagt      2220
     ctacagcctg cagatggcct aatcaggcag cccaatgaaa aagagattgc tgctcactcg      2280
     gttgctaaat atggtgccct tgcccgccag aaaatatcca ctggtaacta catcaccacc      2340
     cttggtgaag ttacacgtgg tcacatgggc ggcgccaaca ctatgtacgc aattgatgca      2400
     cctcctgaac tttaaacact cgaa                                             2424
//