ID   GU130080; SV 1; linear; genomic RNA; STD; VRL; 2412 BP.
XX
AC   GU130080;
XX
DT   02-NOV-2010 (Rel. 106, Created)
DT   02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate CI-05 RNA-dependent RNA polymerase (RdRp) gene,
DE   partial cds; and triple gene block protein 1 (TGBp1), triple gene block
DE   protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein
DE   (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2412
RA   Cordoba-Selles M.C.;
RT   "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT   causing necrosis in tomato";
RL   Unpublished.
XX
RN   [2]
RP   1-2412
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (22-OCT-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 3c797b728309eaa91c64771616231fbc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2412
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="CI-05"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:112229"
FT   gene            <1..472
FT                   /gene="RdRp"
FT   CDS             <1..472
FT                   /codon_start=2
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E3SWW2"
FT                   /db_xref="UniProtKB/TrEMBL:E3SWW2"
FT                   /protein_id="ADP00423.1"
FT                   /translation="TECSIAYTATKYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNK
FT                   LKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAI
FT                   DMKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT   gene            498..1202
FT                   /gene="TGBp1"
FT   CDS             498..1202
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:E3SWW3"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:E3SWW3"
FT                   /protein_id="ADP00424.1"
FT                   /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT                   SASEEEVLDFVSDQVLTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT                   LTIGELNARSNS"
FT   gene            1183..1554
FT                   /gene="TGBp2"
FT   CDS             1183..1554
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q8JJH7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJH7"
FT                   /protein_id="ADP00425.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT                   SCYNTHSATNNTQPLSGHH"
FT   gene            1406..1660
FT                   /gene="TGBp3"
FT   CDS             1406..1660
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q8B083"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8B083"
FT                   /protein_id="ADP00426.1"
FT                   /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT   gene            1699..2412
FT                   /gene="CP"
FT   CDS             1699..2412
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q8JJF2"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJF2"
FT                   /protein_id="ADP00427.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2412 BP; 733 A; 583 C; 438 G; 658 T; 0 other;
     cacagaatgt tcaatagcat atactgctac aaaataccat cttgattcta cagtcaagca        60
     ggtttatgct ggagatgata tggcattaga tggagttgtc caagaaaaac cctcttttaa       120
     aaaactacag aacaagctta aactcacctc aaagacacta tttccaaaac aggttaaagg       180
     tgattatgct gaattctgtg gttggacttt cactcctggt ggtatcatta aaaacccttt       240
     gaaaatgcat gcttccatta tgttgcaaga ggcaatcggc aatttacaca ctgctgccag       300
     atcatatgcc attgacatga agcattcata ccaaatgggt gatgagctgc acaattactt       360
     aacaccagat gaagctgaac aacacttcct tgctgttcgg aagttgcaca agttacacca       420
     aggagaagca atgagacttg gtgaaaagag ccctccaaaa gcaacacatt gaggggttaa       480
     gttttcccca gttcgaaatg gaaagatcaa ctctgattaa tttacttcaa ttacaccact       540
     tcgagccaaa actcagtgtt gaaggaatca tagttgtgca cggaattgca ggcactggga       600
     aaaccacttt acttaggact ttattttctg cttaccctag cttagttata ggttcaccta       660
     ggccttgcta tttagataaa caaaacaaaa tttcacaagt ttgcttatct tgctttccca       720
     atactcattg tgatattgtc gatgagtacc atttgctaga aagttttcca gaaccaaaat       780
     tagctatctt tggtgacccc tgtcaatgca catacattga gagacttaga gtcccacatt       840
     acacttcctt cagaactcat agatttggaa agtcaactgc tgagattttg aacaaactgt       900
     ttgaccttaa tatagtctca gttaagaaag aagacgacat cgttgaattc tttaaccctt       960
     ttgaagttga ccccactgag catatctcag cctctgaaga agaagtcttg gactttgttt      1020
     ctgaccaagt gttgaccact agctcagagg aactagcagg acttgagttt gcagaaacaa      1080
     ctttctactg cacaacattg gccgcagctg ttgctgaaaa tcctgctaag actttcatct      1140
     ctctgactag acacacccac aaactcacca ttggagaact aaatgccagg tctaactcct      1200
     agagctgacc tcactgacac atacaaaatt attgccattg ctttcttgtt gtcagcttgc      1260
     atttacttcc aaaatagcca ctaccaacct gttgctggag acaacttgca ccgtttgcct      1320
     tttggtggcc aatatcaaga cggcaccaaa aagatatctt attttccaca acagcagtca      1380
     tactttcatt ctggaaacaa attaaatgtc ctcatactta tcttcattct cacattgggt      1440
     attgtcctca ccaataaatt tagttttagc tttagtcgta ctactcacca gcattcttgc      1500
     tataacacac attcagcaac caacaataca caaccattgt caggtcatca ttgacggtgc      1560
     tgcaatagtt ataacaaatt gtgagaacac accagaagtg cttaaagcaa tcaacttctc      1620
     cccttggaac gggttaagtt ttcctaaatt tgaaaattaa tattgagtgc tcacaaaaat      1680
     caacttcaat aaacaatcat gcctgacaca acacctgttg ctgccacttc aagtgcacca      1740
     cccacagcca aagatgctgg tgccaaagct ccttcagact tctcaaatcc caatacagct      1800
     cctagtctca gtgatttgaa gaaagtcaag tatgtctcca ccgtgacctc cgtggccaca      1860
     ccagctgaaa ttgaagccct aggcaaaatc ttcaccgcta tgggccttgc cgccaatgag      1920
     actggtccgg ccatgtggga tctggctcgt gcatatgctg atgtgcagag ttctaaatcg      1980
     gcacagctga ttggagctac cccttccaac cctgcactat cacgccgagc ccttgctgct      2040
     cagtttgatc gaatcaatat aacccccagg caattttgca tgtactttgc caaagttgtt      2100
     tggaacatac ttctcgacag caacattcca ccagcaaatt gggccaaact tggttaccaa      2160
     gaagatacaa aatttgctgc atttgacttc ttcgatggag tcaccaaccc tgccagcctg      2220
     cagcctgctg atggtcttat caggcagcca aatgagaaag aactagctgc tcactccgta      2280
     gctaagtatg gcgccttggc taggcaaaag atctccacag gtaattatat taccacactt      2340
     ggagaagtca cacgtggaca catgggagga gctaacacca tgtacgcgat agacgcaccc      2400
     cctgaacttt aa                                                          2412
//