ID   GU130078; SV 1; linear; genomic RNA; STD; VRL; 2411 BP.
XX
AC   GU130078;
XX
DT   02-NOV-2010 (Rel. 106, Created)
DT   02-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Pepino mosaic virus isolate Al-1-05 RNA-dependent RNA polymerase (RdRp)
DE   gene, partial cds; and triple gene block protein 1 (TGBp1), triple gene
DE   block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat
DE   protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2411
RA   Cordoba-Selles M.C.;
RT   "Characterization of distinct Spanish isolates of Pepino mosaic virus
RT   causing necrosis in tomato";
RL   Unpublished.
XX
RN   [2]
RP   1-2411
RA   Cordoba-Selles M.C.;
RT   ;
RL   Submitted (22-OCT-2009) to the INSDC.
RL   IAM, UPV, Camino de Vera s/n, Valencia 46022, Spain
XX
DR   MD5; 41f6acfd98e4c6723beb87c789f425bc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2411
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="Al-1-05"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:112229"
FT   gene            <1..472
FT                   /gene="RdRp"
FT   CDS             <1..472
FT                   /codon_start=2
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF1"
FT                   /db_xref="GOA:E3SWV2"
FT                   /db_xref="UniProtKB/TrEMBL:E3SWV2"
FT                   /protein_id="ADP00413.1"
FT                   /translation="TECSIAYTATRYHLDSTIKQVYAGDDMALDGVVQEKPSFKKLQNK
FT                   LKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAI
FT                   DMKHSYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH"
FT   gene            498..1202
FT                   /gene="TGBp1"
FT   CDS             498..1202
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /note="ORF2"
FT                   /db_xref="GOA:Q3BLP3"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q3BLP3"
FT                   /protein_id="ADP00414.1"
FT                   /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC
FT                   TYIERLRVPHYISFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT                   SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT                   LTIGELNARSNS"
FT   gene            1183..1554
FT                   /gene="TGBp2"
FT   CDS             1183..1554
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q3BLN6"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q3BLN6"
FT                   /protein_id="ADP00415.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVFTNKFSFSFSRTTHQH
FT                   SCYNTHSATNNTQPLSGHH"
FT   gene            1406..1660
FT                   /gene="TGBp3"
FT   CDS             1406..1660
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q8B083"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8B083"
FT                   /protein_id="ADP00416.1"
FT                   /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT   gene            1698..2411
FT                   /gene="CP"
FT   CDS             1698..2411
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /note="ORF5"
FT                   /db_xref="GOA:Q8JJF2"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJF2"
FT                   /protein_id="ADP00417.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2411 BP; 732 A; 583 C; 438 G; 658 T; 0 other;
     cacagaatgt tcaatagcat atactgctac aagataccat cttgattcta caatcaagca        60
     ggtttacgct ggagatgata tggcattaga tggagttgtc caagaaaaac cctctttcaa       120
     aaaactacag aacaagctta aactcacctc aaagacacta tttccaaaac aggttaaagg       180
     tgattatgct gaattctgtg gttggacttt cactcctggt ggtatcatta aaaacccttt       240
     gaaaatgcat gcctccatta tgttgcaaga ggcaataggc aatttacaca ctgctgccag       300
     atcatatgcc attgacatga agcattcata ccaaatgggt gatgagcttc acaattactt       360
     aacaccagat gaagctgaac aacacttcct tgctgttcgg aagttgcaca agttacacca       420
     aggagaagca atgagacttg gtgaaaagag ccctccaaaa gcaacacatt gaggggttaa       480
     gttttcccca gttcgaaatg gaaagatcaa ctctgattaa tttacttcaa ttgcaccact       540
     tcgagccaaa actcagtgtt gaaggaatca tagttgtgca cggaattgca ggcactggga       600
     aaaccacttt acttaggact ttattttctg cttaccctag cttagttata ggttcaccta       660
     ggccttgcta tttagataaa caaaacaaaa tttcacaagt ttgcttatct tgctttccca       720
     atacccattg tgatattgtc gatgagtatc atttgctaga aagttttcta gaaccaaaat       780
     tggctatctt tggtgacccc tgtcaatgca catacattga gagacttaga gtcccacatt       840
     acatttcctt cagaactcat agatttggaa agtcaactgc tgagattttg aacaaactgt       900
     ttgaccttaa tatagtctca gttaagaaag aagacgacat cgttgaattc tttaaccctt       960
     ttgaagttga ccccactgag catatctctg cctctgaaga agaagtcttg gactttgttt      1020
     ctgaccaagt ggtgaccact agctcagagg aactagcagg acttgagttt gcagaaacaa      1080
     ctttctactg cacaacattg gccgcagctg ttgctgaaaa tcctgctaag actttcatct      1140
     ctctgactag acacacccac aaactcacca ttggggaact aaatgccagg tctaactcct      1200
     agagctgacc tcactgacac atacaaaatc attgccattg ctttcttgtt gtcagcttgc      1260
     atttacttcc aaaatagcca ctaccaacct gttgctggag acaatttaca ccgtttgcct      1320
     tttggtggcc aatatcaaga cggcaccaaa aagatatctt attttccaca acagcagtca      1380
     tactttcatt ctggaaacaa attaaatgtc ctcatactta tcttcattct cacattgggt      1440
     attgtcttca ccaataaatt tagttttagc tttagtcgta ctactcacca gcattcttgc      1500
     tataacacac attcagcaac caacaataca caaccattgt caggtcatca ttgacggtgc      1560
     tgcaatagtc ataacaaatt gtgaaaacac accagaagtg cttaaagcaa tcaacttctc      1620
     cccttggaac gggttaagtt ttcctaaatt tgaaaattaa tattgagtgt tcacaaaatc      1680
     aacttcaata aacaatcatg cctgacacaa cacctgttgc tgccacttca agtgcaccac      1740
     ccacagccaa agatgctggt gccaaagctc cttctgactt ctcaaatccc aatacagctc      1800
     ctagcctcag tgatttgaag aaagtcaagt atgtctccac cgtgacctcc gtggccacac      1860
     cagctgaaat tgaagcccta ggcaaaatct tcaccgctat gggccttgcc gccaatgaga      1920
     ctggtccggc catgtgggat ctagctcgtg catatgctga tgtgcagagt tctaaatcgg      1980
     cacagctgat tggagctacc ccttccaacc ctgcactatc acgccgagcc cttgctgctc      2040
     agtttgatag aatcaatata acccccaggc aattttgcat gtactttgcc aaagttgttt      2100
     ggaacatact tctcgacagc aacattccac cagcaaattg ggccaaactt ggttaccaag      2160
     aagatacaaa atttgctgca tttgacttct tcgatggagt caccaaccct gccagcctgc      2220
     agcctgctga tggtcttatc aggcagccaa atgagaaaga actagctgct cactccgtag      2280
     ctaagtacgg cgccttggct aggcaaaaga tctccacagg taattatatt accacacttg      2340
     gagaagtcac acgtggacac atgggaggag ctaacaccat gtacgcgata gacgcacccc      2400
     ctgaacttta a                                                           2411
//