ID   GU127649; SV 1; linear; genomic RNA; STD; VRL; 1725 BP.
XX
AC   GU127649;
XX
DT   24-OCT-2011 (Rel. 110, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 5)
XX
DE   Sweet potato chlorotic stunt virus isolate MBL16 RNA-dependent RNA
DE   polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7
DE   protein (p7), and p22 protein (p22) genes, complete cds.
XX
KW   .
XX
OS   Sweet potato chlorotic stunt virus
OC   Viruses; Riboviria; Closteroviridae; Crinivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1725
RX   PUBMED; 24278443.
RA   Tugume A.K., Amayo R., Weinheimer I., Mukasa S.B., Rubaihayo P.R.,
RA   Valkonen J.P.;
RT   "Genetic Variability and Evolutionary Implications of RNA Silencing
RT   Suppressor Genes in RNA1 of Sweet Potato Chlorotic Stunt Virus Isolates
RT   Infecting Sweetpotato and Related Wild Species";
RL   PLoS One 8(11):E81479-E81479(2013).
XX
RN   [2]
RP   1-1725
RA   Tugume A.K., Amayo R., Mukasa S.B.;
RT   ;
RL   Submitted (23-OCT-2009) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL   FIN-00014, Finland
XX
DR   MD5; 9b8e90905a46bf2a913b5806a913a572.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1725
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /host="Ipomoea acuminata"
FT                   /isolate="MBL16"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Mbale"
FT                   /collection_date="18-May-2007"
FT                   /db_xref="taxon:81931"
FT   gene            <1..54
FT                   /gene="RdRp"
FT   CDS             <1..54
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RNA replication"
FT                   /db_xref="GOA:M0QTN3"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTN3"
FT                   /protein_id="ADQ42604.1"
FT                   /translation="NFSSFRKIFDEFFVVDI"
FT   gene            71..757
FT                   /gene="RNaseIII"
FT   CDS             71..757
FT                   /codon_start=1
FT                   /gene="RNaseIII"
FT                   /product="ribonuclease III"
FT                   /note="endonuclease; suppressor of RNA silencing"
FT                   /db_xref="GOA:G8A4L8"
FT                   /db_xref="InterPro:IPR036389"
FT                   /db_xref="UniProtKB/TrEMBL:G8A4L8"
FT                   /protein_id="ADQ42605.1"
FT                   /translation="MVPIYSDVSEESKLTVFGSRHRLDSIVHSICTSDDRDRYEILGDW
FT                   AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFYLWLTPDQMQ
FT                   LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFYIKKP
FT                   ARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV
FT                   EALNLS"
FT   gene            762..935
FT                   /gene="p7"
FT   CDS             762..935
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="p7 protein"
FT                   /db_xref="GOA:L7N8X0"
FT                   /db_xref="UniProtKB/TrEMBL:L7N8X0"
FT                   /protein_id="ADQ42607.1"
FT                   /translation="MEYSAIFNECCKECVMFNPKKCRFNVALLWSGIGFFTFNIILLFV
FT                   YCLLSIRIRRSY"
FT   gene            1091..1666
FT                   /gene="p22"
FT   CDS             1091..1666
FT                   /codon_start=1
FT                   /gene="p22"
FT                   /product="p22 protein"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTN4"
FT                   /protein_id="ADQ42606.1"
FT                   /translation="MSSGAIYSELNRFLKYLRELDFSNFCFSDFLFRFSSLKSLIDEYS
FT                   SHWIEKTNELVWYRPMCEQRLHPHLFDPNGLLTRKNFSDLKHDLIMIRDHFSSIDDFLN
FT                   KYPAIPILVSFTKNISAFLEDNEWESVIHHTDSLNRLVFRESWSDGYGYINHHRLSVSS
FT                   HGFQHMKLGDIFRLSKDKLNSGVFTFLL"
FT   3'UTR           1667..>1725
XX
SQ   Sequence 1725 BP; 463 A; 260 C; 362 G; 640 T; 0 other;
     aatttttcgt cgtttcgtaa gattttcgac gagttctttg ttgttgatat ttgattttcc        60
     accgattatg atggttccga tttattccga cgtttccgag gaaagcaaac ttactgtctt       120
     cggaagtcgt catagattgg attctattgt acacagcatt tgtacttcag atgatagaga       180
     cagatatgag attttaggtg attgggctgt cgcatcgtat gtcacgcgta tgctgacaga       240
     tctcttcaaa cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc       300
     taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt tttatctttg       360
     gttgactccc gaccaaatgc agttgtgtag gaagactttc gccggtggga gaagtctgta       420
     tgaggtcaat gttaaattct tagccaacta ttttgagaga atcgttggtt ggttggttgt       480
     gcatgattgt tcagaaagtg ttgagaagtt tcttgatctt ttcttgaagc ctcatatgtc       540
     tttctacatt aagaaacctg cccgttctat tcttgaagaa tgggccatga agaataacaa       600
     gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg tcctagtcga       660
     cggacaagag gtcagtcggg ctagtgattt gattagtaag aagagagcaa tttcaaaagc       720
     ggtttctttc gctgttgaag ctctaaatct gagttgaatc catggagtac tctgctattt       780
     ttaatgaatg ttgtaaagaa tgtgtgatgt ttaaccccaa gaaatgtcgc tttaatgtgg       840
     cactactttg gtctggtatt ggattcttta cttttaatat tattttattg tttgtatatt       900
     gccttttgag tattagaatt agaaggtctt attaattagt tatcgcagat aagtggaata       960
     gagtgaaaaa ctactgtaat tgattattgt gatgtgtcac aactcacaat ttaattgatt      1020
     cagtccaacc tgcactagtt tgtggcgagg gtggttgttc gttcggtttt attatctatt      1080
     tctttgaacg atgagttctg gagcaattta ctctgaactt aatcgttttc ttaagtatct      1140
     tagggagtta gattttagta atttttgttt tagtgatttt ttgtttcgtt tttcttccct      1200
     aaaatcacta atcgatgagt atagtagtca ttggatagaa aaaacgaatg aattggtctg      1260
     gtatagacca atgtgtgagc aacgattgca tcctcatctt ttcgatccaa acgggttgtt      1320
     aacaaggaaa aatttttcag atttgaagca tgacttgata atgattcgtg atcatttttc      1380
     gagtattgat gattttctaa acaagtatcc ggctatacca attcttgttt cattcaccaa      1440
     aaatattagt gcgtttttag aagataatga gtgggaatcc gttattcatc atacggactc      1500
     actcaatcgt cttgttttcc gagagtcgtg gtcagacggt tatggttaca ttaaccacca      1560
     tcgtctttca gtgtcgtcgc atggttttca acacatgaag ttaggtgata tttttcgttt      1620
     gtcgaaggat aagttgaaca gtggtgtgtt cactttcctt ctttaatgtt ttcttttagt      1680
     atattaataa caatcgataa agatattagg gtagatttga ttaat                      1725
//