Dbfetch
ID GU127645; SV 1; linear; genomic RNA; STD; VRL; 1725 BP. XX AC GU127645; XX DT 24-OCT-2011 (Rel. 110, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 5) XX DE Sweet potato chlorotic stunt virus isolate RUK108 RNA-dependent RNA DE polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII), p7 DE protein (p7), and p22 protein (p22) genes, complete cds. XX KW . XX OS Sweet potato chlorotic stunt virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RC Publication Status: Online-Only RP 1-1725 RX PUBMED; 24278443. RA Tugume A.K., Amayo R., Weinheimer I., Mukasa S.B., Rubaihayo P.R., RA Valkonen J.P.; RT "Genetic Variability and Evolutionary Implications of RNA Silencing RT Suppressor Genes in RNA1 of Sweet Potato Chlorotic Stunt Virus Isolates RT Infecting Sweetpotato and Related Wild Species"; RL PLoS One 8(11):E81479-E81479(2013). XX RN [2] RP 1-1725 RA Tugume A.K., Amayo R., Mukasa S.B.; RT ; RL Submitted (23-OCT-2009) to the INSDC. RL Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki RL FIN-00014, Finland XX DR MD5; 61181eb03ea6dd6aad95a3002ff619ee. XX FH Key Location/Qualifiers FH FT source 1..1725 FT /organism="Sweet potato chlorotic stunt virus" FT /host="Ipomoea batatas" FT /isolate="RUK108" FT /mol_type="genomic RNA" FT /country="Uganda:Rukungiri" FT /collection_date="11-Jun-2007" FT /db_xref="taxon:81931" FT gene <1..54 FT /gene="RdRp" FT CDS <1..54 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /note="RNA replication" FT /db_xref="GOA:M0QTM2" FT /db_xref="UniProtKB/TrEMBL:M0QTM2" FT /protein_id="ADQ42588.1" FT /translation="NFSSFRKIFDECLVLDI" FT gene 71..757 FT /gene="RNaseIII" FT CDS 71..757 FT /codon_start=1 FT /gene="RNaseIII" FT /product="ribonuclease III" FT /note="endonuclease; suppressor of RNA silencing" FT /db_xref="GOA:M0QTM3" FT /db_xref="InterPro:IPR036389" FT /db_xref="UniProtKB/TrEMBL:M0QTM3" FT /protein_id="ADQ42589.1" FT /translation="MEPIYSDVSEESKLTVFGSRHRLDSIVHSICTSDDRDRYEILGDW FT AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFHLWLTPDQMQ FT LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFYIKKP FT ARSILEEWAMKNNKRLDIYTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV FT EALNLS" FT gene 762..935 FT /gene="p7" FT CDS 762..935 FT /codon_start=1 FT /gene="p7" FT /product="p7 protein" FT /db_xref="GOA:M0QTM4" FT /db_xref="UniProtKB/TrEMBL:M0QTM4" FT /protein_id="ADQ42591.1" FT /translation="MEYSAFFNECCKECVLFNPKKCRFDVALLWSGIGFFTFNIILLFV FT YCLLSIRIRRSY" FT gene 1091..1666 FT /gene="p22" FT CDS 1091..1666 FT /codon_start=1 FT /gene="p22" FT /product="p22 protein" FT /db_xref="UniProtKB/TrEMBL:Q8JJW6" FT /protein_id="ADQ42590.1" FT /translation="MSSGAIYSELNRFLKYLRELDFSNFCFSDFLFRFSSLKSLIDEYS FT SHWLVNTNELVWYRTICEQRLHPHLFDANRLLTRINVSDLKHDLIMIRDHFSSIDDFLN FT KYPAIPILVSFTKNISAFLEDNEWESVIHHTDSLNRLVFRESWSDGYGYVNHHRLSASS FT HDFQHMKLCDIFRLSKDKLNSGVFTFLL" XX SQ Sequence 1725 BP; 464 A; 263 C; 362 G; 636 T; 0 other; aatttttcgt cgtttcgtaa gattttcgac gagtgcctag ttctagatat ttgatttttc 60 accgattatg atggaaccaa tttattccga cgtttccgag gaaagcaaac ttactgtctt 120 cggaagtcgt catagattgg attctattgt acacagcatt tgtacttcag atgatagaga 180 cagatatgag attttaggtg attgggctgt cgcatcgtat gtcacgcgta tgctgacaga 240 tctcttcaaa cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc 300 taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt ttcatctttg 360 gttgactccc gaccaaatgc agttgtgtag gaagactttc gccggtggga gaagtctgta 420 tgaggtcaat gttaaattct tagccaacta ttttgagaga atcgttggtt ggttggttgt 480 gcatgattgt tcagaaagtg ttgagaagtt tcttgatctc ttcttgaagc ctcatatgtc 540 tttctacatt aagaaacctg cccgttctat tcttgaagaa tgggccatga agaataacaa 600 gagacttgac atttatactg gtgagtataa tgtcaacaag gtagtttatg tcctagtcga 660 cggacaagag gtcagtcggg ctagtgattt gattagtaag aagagagcaa tttcaaaagc 720 ggtttctttc gctgttgaag ctctaaatct gagttgaatc catggagtac tctgcttttt 780 ttaatgaatg ttgtaaagaa tgtgtgttgt ttaaccccaa gaaatgtcgc tttgatgtgg 840 cactactttg gtctggtatt ggattcttta cttttaatat tattttattg tttgtatatt 900 gccttttgag tattagaatt agaaggtctt attaattagt tatcgtagat aagtggaata 960 gagtgaaaaa ctactgtaat tgattattgt gatgtgtcac aactcacaat ttaattgatt 1020 cagtccaacc tgcactagtt tgtggcgagg gtggttgttc gttcggtttt attatctatt 1080 tctttgaacg atgagttctg gagcaattta ctctgaactt aatcgttttc ttaagtatct 1140 tagggagtta gattttagta atttttgttt tagtgatttt ttgtttcgtt tttcttccct 1200 aaaatcacta atcgatgagt atagtagtca ttggttagta aatacgaatg aattagtctg 1260 gtatagaaca atctgtgagc aacgattgca tcctcatctt ttcgatgcaa acaggttgtt 1320 aacacggata aatgtttcag atttgaagca tgacttgata atgattcgtg atcatttttc 1380 gagtattgat gattttctaa acaagtatcc ggctatacca attcttgtct cattcaccaa 1440 aaatattagt gcgtttttag aagataatga gtgggaatcc gttattcatc atacggactc 1500 actcaatcgt cttgttttcc gagagtcgtg gtcagacggt tatggttacg ttaaccacca 1560 tcgtctttca gcgtcgtcgc atgattttca acatatgaag ttatgtgaca tttttcgttt 1620 gtcgaaggat aagttgaaca gtggtgtgtt cactttcctt ctttaatgtt ttcttttagt 1680 agagtaacaa aaatcgataa agatattagg gtagatttga ttaat 1725 //