ID   GU127603; SV 1; linear; genomic RNA; STD; VRL; 958 BP.
XX
AC   GU127603;
XX
DT   24-OCT-2011 (Rel. 110, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 5)
XX
DE   Sweet potato chlorotic stunt virus isolate KTK41 RNA-dependent RNA
DE   polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII) and p7
DE   protein (p7) genes, complete cds.
XX
KW   .
XX
OS   Sweet potato chlorotic stunt virus
OC   Viruses; Riboviria; Closteroviridae; Crinivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-958
RX   PUBMED; 24278443.
RA   Tugume A.K., Amayo R., Weinheimer I., Mukasa S.B., Rubaihayo P.R.,
RA   Valkonen J.P.;
RT   "Genetic Variability and Evolutionary Implications of RNA Silencing
RT   Suppressor Genes in RNA1 of Sweet Potato Chlorotic Stunt Virus Isolates
RT   Infecting Sweetpotato and Related Wild Species";
RL   PLoS One 8(11):E81479-E81479(2013).
XX
RN   [2]
RP   1-958
RA   Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (23-OCT-2009) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL   FIN-00014, Finland
XX
DR   MD5; 15ba6de292d883def735527bb841befd.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..958
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /host="Ipomoea batatas"
FT                   /isolate="KTK41"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Katakwi"
FT                   /collection_date="30-May-2007"
FT                   /db_xref="taxon:81931"
FT   gene            <1..54
FT                   /gene="RdRp"
FT   CDS             <1..54
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RNA replication"
FT                   /db_xref="GOA:M0QTD8"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTD8"
FT                   /protein_id="ADQ42428.1"
FT                   /translation="NFSSFRKIFDEFFVVDI"
FT   gene            71..757
FT                   /gene="RNaseIII"
FT   CDS             71..757
FT                   /codon_start=1
FT                   /gene="RNaseIII"
FT                   /product="ribonuclease III"
FT                   /note="endonuclease; suppressor of RNA silencing"
FT                   /db_xref="GOA:Q8JJW8"
FT                   /db_xref="InterPro:IPR036389"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJW8"
FT                   /protein_id="ADQ42429.1"
FT                   /translation="MVPIYSDVSEESKLTVFGSRHRLDSIVHSICTSGDRDRYEILGDW
FT                   AVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFYLWLTPDQMQ
FT                   LCRKTFAGGRSLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFHIKKP
FT                   ARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFAV
FT                   EALNLS"
FT   gene            762..935
FT                   /gene="p7"
FT   CDS             762..935
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="p7 protein"
FT                   /db_xref="GOA:L7N966"
FT                   /db_xref="UniProtKB/TrEMBL:L7N966"
FT                   /protein_id="ADQ42430.1"
FT                   /translation="MEYSAIFNECCKECVMFNPKKCRFDVALLWSVIVFFTVNIILLIV
FT                   YFLLSIRIRRSY"
XX
SQ   Sequence 958 BP; 251 A; 144 C; 211 G; 352 T; 0 other;
     aatttttcgt cgtttcgtaa gattttcgac gagttctttg ttgttgatat ttgattttcg        60
     accgattatg atggttccga tttattccga cgtttccgag gaaagcaagc ttactgtctt       120
     cggaagtcgt catagattgg attctattgt acacagcatt tgtacttcag gtgatagaga       180
     cagatatgag attttaggtg attgggctgt cgcatcgtat gtcacgcgta tgctgacaga       240
     tctcttcaaa cataatgctg atgctgaatc tctgtcgttg cttcgcgctc ataatatttc       300
     taatgttatg ttcgcaaaag tcatggtaga atcaaaactc ttcgaagatt tttatctttg       360
     gttgactccc gaccaaatgc agttgtgtag gaagactttc gccggtggga gaagtttgta       420
     tgaggtcaat gttaaattct tagccaacta ttttgagaga atcgttggtt ggttggttgt       480
     gcatgattgt tcagaaagtg ttgagaagtt tcttgatctt ttcttgaagc ctcatatgtc       540
     tttccacatt aagaaacctg cccgttctat tcttgaagaa tgggctatga agaataacaa       600
     gagacttgac attcatactg gtgagtataa tgtcaacaag gtagtttatg tcctagtcga       660
     cggacaagag gtcagtcggg ctagtgattt gattagtaag aagagagcaa tttcaaaagc       720
     ggtttctttc gctgttgaag ctctaaatct gagttgaatc catggagtac tctgctattt       780
     ttaatgaatg ttgtaaagaa tgtgtgatgt ttaaccccaa gaaatgtcgc tttgatgtgg       840
     cactactttg gtctgttatt gtattcttta ctgttaatat tattttattg attgtatatt       900
     tccttttaag tattagaatt agaaggtctt attaataatt agggtatttt tgattaac         958
//