ID   GU127601; SV 1; linear; genomic RNA; STD; VRL; 1403 BP.
XX
AC   GU127601;
XX
DT   24-OCT-2011 (Rel. 110, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 5)
XX
DE   Sweet potato chlorotic stunt virus isolate A1GT RNA-dependent RNA
DE   polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII) and p7
DE   protein (p7) genes, complete cds.
XX
KW   .
XX
OS   Sweet potato chlorotic stunt virus
OC   Viruses; Riboviria; Closteroviridae; Crinivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1403
RX   PUBMED; 24278443.
RA   Tugume A.K., Amayo R., Weinheimer I., Mukasa S.B., Rubaihayo P.R.,
RA   Valkonen J.P.;
RT   "Genetic Variability and Evolutionary Implications of RNA Silencing
RT   Suppressor Genes in RNA1 of Sweet Potato Chlorotic Stunt Virus Isolates
RT   Infecting Sweetpotato and Related Wild Species";
RL   PLoS One 8(11):E81479-E81479(2013).
XX
RN   [2]
RP   1-1403
RA   Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (22-OCT-2009) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL   FIN-00014, Finland
XX
DR   MD5; 2e9e4ede8ffe2f05bec7af9782aece65.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1403
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /host="Ipomoea batatas"
FT                   /isolate="A1GT"
FT                   /serotype="West African"
FT                   /mol_type="genomic RNA"
FT                   /country="Guatemala"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:81931"
FT   gene            <1..506
FT                   /gene="RdRp"
FT   CDS             <1..506
FT                   /codon_start=3
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RNA replication"
FT                   /db_xref="GOA:M0QTD6"
FT                   /db_xref="InterPro:IPR001788"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTD6"
FT                   /protein_id="ADQ42422.1"
FT                   /translation="TLVTMGMLLNVYDLDDIDLMLVSGDDSLIFSKKQLENKTNELNIN
FT                   FGFEAKFIENSVPYFCSKFIIDDRGSIKVVPDPVRFFEKLSVPVRLSDFLSETTLRERF
FT                   TSYKDLMSEYDNDSVCLLVDSLISKRYSLPLMTSYAALCFIHCLCANFSSFRKIFDELF
FT                   VVDI"
FT   gene            523..1209
FT                   /gene="RNaseIII"
FT   CDS             523..1209
FT                   /codon_start=1
FT                   /gene="RNaseIII"
FT                   /product="ribonuclease III"
FT                   /note="endonuclease; suppressor of RNA silencing"
FT                   /db_xref="GOA:L7N964"
FT                   /db_xref="InterPro:IPR036389"
FT                   /db_xref="UniProtKB/TrEMBL:L7N964"
FT                   /protein_id="ADQ42423.1"
FT                   /translation="MIPIFSDVSEESKLTIFGSRHRLDSIIQSICASEDRDKYEILGDW
FT                   AITTYVTSMLTDLFKHDADAESLSLLRAHNISNFMFAKVMVESRFYEDFSIWLTPDQLQ
FT                   LCRMTFGGGKNVYEVNVKFLANYFERVVGWLVINDSSESIKKFLDLFLKPLMSFRIKKP
FT                   ARSILQEWAVKNNKRLDIYTGEYNVNNVVYVLVDGKEISRANDLISKKRAISKAVIFAV
FT                   EALNLN"
FT   gene            1214..1381
FT                   /gene="p7"
FT   CDS             1214..1381
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="p7 protein"
FT                   /db_xref="GOA:A8UE12"
FT                   /db_xref="UniProtKB/TrEMBL:A8UE12"
FT                   /protein_id="ADQ42424.1"
FT                   /translation="MDYSAIINECCKECVLYNPKKCRLDVALLWFGVGFFALSILLFLL
FT                   FPFLIVRFRR"
XX
SQ   Sequence 1403 BP; 393 A; 200 C; 294 G; 516 T; 0 other;
     acacgttggt tacaatgggg atgttattga atgtttatga tcttgacgat atcgatctca        60
     tgttggtgag tggtgatgac agtttgatat tctcaaagaa gcagttagaa aacaaaacga       120
     atgaattgaa cattaatttt gggtttgagg caaaatttat tgaaaattca gtcccatatt       180
     tctgttctaa attcataatc gatgatcgag gttcgatcaa ggtcgtacca gatccggtta       240
     ggttctttga gaagttatca gtgccggtga gactgtccga ttttttgtct gaaactacgt       300
     tgagagagag attcacctca tataaggatt tgatgtctga gtatgacaac gacagtgtgt       360
     gcttattggt cgattccctt atcagtaaga gatattctct tccattaatg acctcatatg       420
     cggcattgtg tttcatacat tgtttgtgtg caaatttttc gtcgtttcgc aagattttcg       480
     acgaattgtt tgttgttgat atttaatttt tatttggtca tgatgattcc gatcttttct       540
     gatgtttctg aagaaagtaa acttactatc ttcggaagtc gtcatagatt ggattctatc       600
     atacaatcca tttgtgcttc agaagacaga gacaaatatg aaattttggg tgattgggct       660
     atcacaacat acgttactag tatgttgact gatcttttta aacatgacgc agatgccgaa       720
     tctctgtcct tacttcgtgc tcataatatt tcaaatttta tgttcgcgaa agttatggtg       780
     gagtcaagat tttatgaaga tttttcaatc tggttgacgc ccgaccaatt gcagttatgt       840
     agaatgactt tcggtggtgg gaaaaatgtt tatgaagtta atgttaaatt cttggctaac       900
     tactttgaga gagttgttgg ttggttagtc ataaatgata gttcggaaag tattaagaag       960
     tttcttgatt tgttcttgaa gcctcttatg tctttccgta ttaagaaacc tgctcgttct      1020
     atccttcaag aatgggccgt aaagaataac aagagacttg acatttatac gggtgagtat      1080
     aatgtcaaca atgtagtcta tgtcctagtc gacggaaaag agatcagtcg agctaatgat      1140
     ttgattagta agaaaagagc aatctcaaag gcagtaattt ttgctgtcga agctctaaat      1200
     ttgaattgaa tccatggact attctgccat aattaatgaa tgttgcaaag aatgtgtgtt      1260
     gtacaatcca aagaaatgtc gccttgatgt ggccctactt tggtttggtg taggattctt      1320
     tgcgttatct attttattat ttttattatt tccttttctt attgttagat ttagaaggta      1380
     attttattta ttagggtatt ttt                                              1403
//