ID   GU127599; SV 1; linear; genomic RNA; STD; VRL; 984 BP.
XX
AC   GU127599;
XX
DT   24-OCT-2011 (Rel. 110, Created)
DT   15-MAY-2014 (Rel. 120, Last updated, Version 5)
XX
DE   Sweet potato chlorotic stunt virus isolate KML33b RNA-dependent RNA
DE   polymerase (RdRp) gene, partial cds; and ribonuclease III (RNaseIII) and p7
DE   protein (p7) genes, complete cds.
XX
KW   .
XX
OS   Sweet potato chlorotic stunt virus
OC   Viruses; Riboviria; Closteroviridae; Crinivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-984
RX   PUBMED; 24278443.
RA   Tugume A.K., Amayo R., Weinheimer I., Mukasa S.B., Rubaihayo P.R.,
RA   Valkonen J.P.;
RT   "Genetic Variability and Evolutionary Implications of RNA Silencing
RT   Suppressor Genes in RNA1 of Sweet Potato Chlorotic Stunt Virus Isolates
RT   Infecting Sweetpotato and Related Wild Species";
RL   PLoS One 8(11):E81479-E81479(2013).
XX
RN   [2]
RP   1-984
RA   Tugume A.K., Amayo R., Mukasa S.B., Valkonen J.P.T.;
RT   ;
RL   Submitted (22-OCT-2009) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL   FIN-00014, Finland
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DR   MD5; 7048756a452739a97bba043e566b17a7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..984
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /host="Ipomoea obscura"
FT                   /isolate="KML33b"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Kamuli"
FT                   /collected_by="A.K. Tugume"
FT                   /collection_date="20-May-2007"
FT                   /db_xref="taxon:81931"
FT   gene            <1..54
FT                   /gene="RdRp"
FT   CDS             <1..54
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RNA replication"
FT                   /db_xref="GOA:M0QTD2"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTD2"
FT                   /protein_id="ADQ42416.1"
FT                   /translation="NFASFKKIFDEIFVVDI"
FT   gene            58..768
FT                   /gene="RNaseIII"
FT   CDS             58..768
FT                   /codon_start=1
FT                   /gene="RNaseIII"
FT                   /product="ribonuclease III"
FT                   /note="endonuclease; suppressor of RNA silencing"
FT                   /db_xref="GOA:M0QTD3"
FT                   /db_xref="InterPro:IPR036389"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTD3"
FT                   /protein_id="ADQ42417.1"
FT                   /translation="MDTLDCEIRITTEVSSEGKMSAFGSKQAFEGAIESVCTSDDRHRY
FT                   ELLGDWAINSYVCQYLTDLYKFKGDAESMSLLKAYNVSNALFSKVMLETSLFEDFSKYL
FT                   SPDQMYTCRRILFHGKSVHETNMNFLANLFERLVGWLVVFGYEGSVKNFLDTFLLGHLS
FT                   VVAKKPLRSVLENWAAQNGKKLVISTREYIDSKIVRVIVDGVEVSNASDLISKRRAVAK
FT                   AVSLAVERLNISKN"
FT   gene            768..941
FT                   /gene="p7"
FT   CDS             768..941
FT                   /codon_start=1
FT                   /gene="p7"
FT                   /product="p7 protein"
FT                   /db_xref="GOA:M0QTD4"
FT                   /db_xref="UniProtKB/TrEMBL:M0QTD4"
FT                   /protein_id="ADQ42418.1"
FT                   /translation="MDYSMLFNECYKRGVMYNPAKCRLDISLFWTGISFVLLLILLSLI
FT                   IACFNICRLLRN"
FT   3'UTR           942..>984
XX
SQ   Sequence 984 BP; 303 A; 138 C; 218 G; 325 T; 0 other;
     aatttcgcct cgttcaagaa aatctttgac gaaatctttg ttgtggacat ttgagtgatg        60
     gacacattgg attgtgagat tcgtatcact accgaagtct cctctgaagg gaaaatgtca       120
     gcttttggta gtaaacaggc atttgaaggc gccattgaaa gtgtatgtac ttcagatgac       180
     agacacagat acgagttgtt aggtgattgg gcgataaact cgtacgtttg tcaatatcta       240
     acagatctct acaagtttaa aggggatgct gagtctatgt cgttattgaa agcgtacaat       300
     gtttccaacg cacttttctc aaaggtcatg ttggaaacat ctctgttcga ggacttcagc       360
     aaatatttgt ctccggatca gatgtatact tgtagacgga tactgtttca tggtaagagt       420
     gttcatgaaa ctaatatgaa ctttctggca aatctatttg agagactggt cggatggtta       480
     gtagtatttg gttatgaagg tagtgttaag aatttcttag acactttcct tctaggccat       540
     ttatctgtag tcgcgaagaa acctctaaga tcagttctag aaaattgggc ggctcagaat       600
     ggtaagaaat tggttatcag tactagagag tacattgata gcaagatcgt tagagttatt       660
     gttgatggcg ttgaggtaag taacgccagt gacctcataa gtaaaagaag agcagtagct       720
     aaagctgtat ctcttgctgt tgaaaggttg aatatcagca agaattgatg gattattcca       780
     tgttatttaa tgaatgttat aaaagaggtg ttatgtacaa tccagcgaaa tgtcgtttag       840
     acatatcgtt gttttggact ggcatttctt ttgtgctatt attaatatta ttatccttaa       900
     taattgcgtg ttttaatata tgtagattat tacgaaacta ataaaaacac aaaaataaaa       960
     taagaaaggg tatttgtgat tatt                                              984
//