ID GU126513; SV 1; circular; genomic DNA; STD; VRL; 2775 BP. XX AC GU126513; XX DT 20-NOV-2009 (Rel. 102, Created) DT 05-MAY-2011 (Rel. 108, Last updated, Version 3) XX DE Tomato yellow leaf curl virus isolate Hwas, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2775 RX DOI; 10.1007/s11262-010-0541-0. RX PUBMED; 20963475. RA Kim S.H., Oh S., Oh T.K., Park J.S., Kim S.C., Kim S.H., Kim Y.S., RA Hong J.K., Sim S.Y., Park K.S., Lee H.G., Kim K.J., Choi C.W.; RT "Genetic diversity of tomato-infecting Tomato yellow leaf curl virus RT (TYLCV) isolates in Korea"; RL Virus Genes 42(1):117-127(2011). XX RN [2] RP 1-2775 RA Kim S.-H., Oh T.-K., Wang Y., Kim J.-A., Oh S., Lee W.-J., Jang K.-M.; RT ; RL Submitted (21-OCT-2009) to the INSDC. RL Department of Biology & Medicinal Science, Pai Chai University, 439-6 Doma RL 2-dong, Seo-gu, Daejeon 302-735, South Korea XX DR MD5; 8bb44319b23fae26c0f7457d4ce1deb5. XX FH Key Location/Qualifiers FH FT source 1..2775 FT /organism="Tomato yellow leaf curl virus" FT /host="Lycopersicon esculentum" FT /isolate="Hwas" FT /mol_type="genomic DNA" FT /country="South Korea:Hwaseong" FT /collection_date="11-May-2009" FT /PCR_primers="fwd_seq: atgaattccttgaagtgcttt, rev_seq: FT caacagatataagatccctaa" FT /PCR_primers="fwd_seq: gaattcatgtcgaagcgwcca, rev_seq: FT gaattcttaatttkrtaytgaatcatagaa" FT /PCR_primers="fwd_seq: gcatgcctcgaatccagtgtatgc, rev_seq: FT gcatgcgtacatgccatatacagtaac" FT /db_xref="taxon:10832" FT gene 142..492 FT /gene="V2" FT CDS 142..492 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:Q2EI17" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2EI17" FT /protein_id="ACY92096.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT gene 302..1078 FT /gene="V1" FT CDS 302..1078 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q17UU2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q17UU2" FT /protein_id="ACY92097.1" FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1075..1479) FT /gene="C3" FT CDS complement(1075..1479) FT /codon_start=1 FT /gene="C3" FT /product="C3" FT /db_xref="GOA:Q00GE0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q00GE0" FT /protein_id="ACY92098.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1220..1627) FT /gene="C2" FT CDS complement(1220..1627) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:D1MAE9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D1MAE9" FT /protein_id="ACY92099.1" FT /translation="MQSSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1536..2609) FT /gene="C1" FT CDS complement(1536..2609) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:D1MAF0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D1MAF0" FT /protein_id="ACY92100.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDSRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNAIFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT gene complement(2165..2458) FT /gene="C4" FT CDS complement(2165..2458) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="GOA:Q17UU4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q17UU4" FT /protein_id="ACY92101.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPRHSIQAVNPRPSIY" XX SQ Sequence 2775 BP; 759 A; 528 C; 604 G; 884 T; 0 other; tggccgcgcc ttttcttttt atgtggtccc cacgagggtt ccacagacgt cactgtcaac 60 caatcaaatt gcatcctcaa acgttagata agtgttcatt tgtctttata tacttggtcc 120 ccaagtaatc tgtcttgcaa tatgtgggat ccacttctaa atgaatttcc tgaatctgtt 180 cacggatttc gttgtatgtt agctattaaa tatttgcagt ccgttgagga aacttacgag 240 cccaatacat tgggccacga tttaattagg gatcttatat ctgttgtaag ggcccgtgac 300 tatgtcgaag cgaccaggcg atataatcat ttccacgccc gcctcgaagg ttcgccgaag 360 gctgaacttc gacagcccat acagcagccg tgctgctgtc cccattgtcc aaggcacaaa 420 caagcgacga tcatggacgt acaggcccat gtaccggaag cccagaatat acagaatgta 480 tcgaagccct gatgttcctc gtggatgtga aggcccatgt aaagtccagt cttatgagca 540 acgggatgat attaagcata ctggtattgt tcgttgtgtt agtgatgtta ctcgtggatc 600 tggaattact cacagagtgg gtaagaggtt ctgtgttaaa tcgatatatt ttttaggtaa 660 agtctggatg gatgaaaata tcaagaagca gaatcacact aatcaggtca tgttcttctt 720 ggttcgtgat agaaggccct atggaaacag cccaatggat tttggacagg tttttaatat 780 gttcgataat gagcccagta ccgcaactgt gaagaatgat ttgcgggata ggtttcaagt 840 gatgaggaaa tttcatgcta cagttattgg tgggccctct ggaatgaagg aacaggcatt 900 agttaagaga ttttttagaa ttaacagtca tgtaacttat aatcatcagg aggcagccaa 960 gtatgagaac catactgaaa acgccttgtt attgtatatg gcatgtacgc atgcctctaa 1020 tccagtgtat gcaactatga aaatacgcat ctatttctat gattcaatat caaattaata 1080 aaatttatat tttatatcat gagtttctgt tacatttatt gtgttttcaa gtacatcata 1140 caatacatga tcaactgctc tgattacatt gttaattgaa attacaccaa gactatctaa 1200 atacttaaga acttgatatc taaatactct taagaaacga ccagtctgag gctgtaatgt 1260 cgtccaaatt cggaagttga gaaaacattt gtgaatcccc aataccttcc tgatgttgtg 1320 gttgaatctt atctgaatgg aaatgatgtc gtggttcatt agaaatggcc tctggctgtg 1380 ttctgttatc ttgaaataga ggggattgtt tatctcccag ataaaaacgc cattctctgc 1440 ttgaggagca gtgatgagtt cccctgtgcg tgaatccatg attgttgcag ttgatgtgga 1500 ggtagtatga gcagccacag tctaggtcta cacgcttacg ccttattggt ttcttcttgg 1560 ctatcttgtg ttggaccttg attgatactt gcgaacagtg gctcgtagag ggtgacgaag 1620 attgcattct tcagagccca atttttcaag gatatgtttt tttcttcgtc tagatattcc 1680 ctatatgagg aggtaggtcc tggattgcag aggaagatag tgggaattcc ccctttaatt 1740 tgaatgggct tcccgtactt tgtgttgctt tgccagtccc tctgggcccc catgaattcc 1800 ttgaagtgct ttaaataatg cgggtctacg tcatcaatga cgttgtacca cacatcatta 1860 ctatacacct ttgggcttag gtctagatgt ccacataaat aattatgtgg gcctagagac 1920 ctggcccaca ttgttttgcc tgttctgcta tcaccctcaa tgacaatact tatgggtctc 1980 catggccgcg cagcggaaga tacgacattc tcggcgaccc actcttcaag ttcatctgga 2040 acttgattaa aagaagaaga aagaaatgga gaaacataaa cttctaaagg aggactaaaa 2100 atcctatcta aatttgaact taaattatga aattgtaaaa tatagtcctt tggggccttc 2160 tcttttaata tattgagggc ctcggattta ctgcctgaat tgagtgcctc ggcatatgcg 2220 tcgttggcag attgctgacc tcctctagct gatctgctat cgatttggaa aactccaaaa 2280 tcaatgaagt ctccgtcttt ctccacgtag gtcttgacat ctgttgagct cttagctgcc 2340 tgaatgttcg gatggaaatg tgctgacctg tttggggata ccaggtcgaa gaaccgttgg 2400 ttcttacatt ggtatttgcc ttcgaattgg ataagcacat ggagatgtgg ttccccattc 2460 tcgtggagtt ctctgcaaac tttgatgtat tttttatttg ttggggtttc taggtttttt 2520 aattgggaaa gtgcttcctc tttagagaga gaacaattgg gatatgttag gaaataattt 2580 ttggcatata ttttaaataa acgaggcatg ttgaaatgaa ttggtgtccc tcaaagctct 2640 atggcaatcg gtgtatcggt gtcttactta tacctggaca cctaatggct atttggtaat 2700 tttgtaaaag tatattgcaa ttcaaaattg aaaattcaaa aatcaaatca ttaaagcggc 2760 catccgtata atatt 2775 //