ID GU121676; SV 1; circular; genomic DNA; STD; VRL; 7543 BP. XX AC GU121676; XX DT 02-NOV-2010 (Rel. 106, Created) DT 02-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Pineapple bacilliform comosus virus, complete genome. XX KW . XX OS Pineapple bacilliform CO virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7543 RA Wu L.T., Li H.P.; RT "Sequencing and analysis of the complete genome sequence of Pineapple RT bacilliform comosus virus"; RL Unpublished. XX RN [2] RP 1-7543 RA Wu L.T., Li H.P.; RT ; RL Submitted (20-OCT-2009) to the INSDC. RL College of Natural Resources, Lab. of Plant Virology, South China RL Agricultural, GuangZhou, GuangDong 510642, China XX DR MD5; cdd4694dc35161bf1a6455a29b2951d7. XX FH Key Location/Qualifiers FH FT source 1..7543 FT /organism="Pineapple bacilliform CO virus" FT /host="pineapple plants" FT /mol_type="genomic DNA" FT /country="China" FT /db_xref="taxon:2033633" FT CDS 443..970 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:E3SW29" FT /protein_id="ADN88180.1" FT /translation="MSQRYWEQKLEEYRNSHTQEVADLAYLNLEGAEKVTHKDLAHNLR FT INTYRQDLANKILVGLSHKHAADIIREIHEDNRKLQNNLKACEKALKEQQAELTAVKSS FT VPALREELRKIQQSWSEHRPLSKDDVEKLVLRISEQPKFIEQQTESLIKELTSKVSRVE FT HLIHQLEGRILG" FT CDS 967..1338 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:E3SW30" FT /protein_id="ADN88181.1" FT /translation="MSLQEKRQNKAYKEALEETRNLWDTAVGFVDKSEIVANIGTITKQ FT LNTVLYLLLDLSERISRLEKVAPPQTKDISKDLEKLQKQLSGLRISEEGGSNLKQKKVP FT LRVFRNPFEILKGEISTSK" FT CDS 1335..7058 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF3" FT /db_xref="GOA:E3SW31" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR001995" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:E3SW31" FT /protein_id="ADN88182.1" FT /translation="MMNTTPREVEQPLVEDQIWGYRWTQRACYEAQEAGRRLANIGRTI FT LGMQPREHTLAMVIDPEAELQRSMSERARTVPAEVLYMTRRDNIHHRVYYFRCEERMRV FT LDSDQQDRTFITPEAFEHLKEAGFEYIHLGILQVRFQILHRRYAGTMAFIAYRDTRWDN FT RKSIIATMEVDLSEGNQIVYIIPDMMTTIRDCYEHIQISIRTIGYDDDWNGESNLLITR FT GMTARLSNTPNVGFAYNISRVADYLKSKGVKAIDASKEKTTQFKGREWVLKPSQASVTP FT IMPTIADAHERYDGSLGIKFGNYQEASTSGPPQYNEHDDEIVEDVVLAIIDDLPEDDEE FT DYFQQILNDYQPDSQVALDYPVLIPTEDPFASSYAPLTPPALTPLPASGDNTPDGIRPV FT LQRIVVGEKDFTDFNTLDFTLRGLDVELQTTDDFTAEEEELIGSFLNQLEEEENLYCKE FT SPSCLFTDDNNGDDEGEHHVVAASLEYPELRKISEIINSTVVDSNPGNQYMIGDTDMDG FT PPGYAPAQAQAAAVPPTYGGTSPSVRGPFRWKNPHEHFELPSAHQLSGAIFVMPQNFDP FT KVFGRWESIVLNHLADRNFPTALDKIIYVENLLGEMEKITFQTWRMRYEEEFVSLQTRV FT LGNNGTQNLLAQIRKVFFLEDPKGGTTVSQDAAYKAIKSLTCQEMSGQAIRKYMSSYFD FT LAARSGRMWVNEELSDDFFTKLPMGLGDRVRQAFLSRYPGNTIGVPARITFTQQYLEEV FT CREAAYQRSLKTLDFCKEFPIPNFYKGPQKKYGVRKSTTYRGKPHKSHIRIDKTKHLKN FT RKCKCYICGEEGHFARDCKNPKKIVDRVHVLEELDIQDGMDVVSVGENEDELSDIYSVS FT EGEESTHEAYHVFSLVEDCLIGKANTWRYQVRVSPKEYYCKHEWGFNSKILKNCRACGA FT TAQTGERMDCPLCNMTICSSCSNYCFDITIPKNEERVQAIVSSSTASREESWKTIALEQ FT RKLIKKLENEKEALIVELNQALEQLKQTKGKGIPEHQDDALEKELLKELLREEKEKAKK FT AEESLQELLKEEKEKAKKAEESLQELLRKEKEKVRKAEESQKETALLVEKLQEQLQQAL FT SNKTTCNEEVREEVAVITEEENLSYSAIKSPTRYNGLYNLKAKIEVEGETVVLNAILDT FT GATACIIQEAKVPDRPCEQAAVSYTLHGVNSTTSGRKVLKGGKLWLGEQFFRLPRTLVA FT DMVLTEGVEMIVGCNFLRSLEGGLRIEGEVVTFYKLVTNVQSCRSTHAFGAIIEELEMA FT EDEYIDLNLMLATEPAVGEEFAKLPLYQQLKAEGFIGENPLLHWQRNQVICELQIKNPE FT LTIEDRPLKHVTPALKEAMQKHVDKLLELKVIRPSTSRHRTTAMIVYSGTEVDPVTKKE FT KRGKERLVFNYKRLNDNTEKDQYSLPGISTILQKIGHSKIYSKFDPKSGFHQVAMHPDS FT VPWTAFWAINGLYEWLVMPFGLKNAPAVFQRKMDHCFRGTEDFIAVYIDDILVFSETPE FT QHKKHLEIFLQIARKNGLVLSPTKMKVGVQQVDFLGATIGNSRIRLQPHIIQKVVQFDN FT KDLQTTKGLRSFLGILNYARSYIPQMGKLLGPLYSKVSPTGEKRMNKQDWAIIEKIKQM FT VEQLPELELPPNGSVIVIETDGCMEGWGGICKWKFPGAPRNQEKVCAYASGRFQPIKST FT IDAEIQAVINSLDKFKIYYLNQKELVVRTDCQAIVSFYEKMANNKPSRVRWLTFSDFIT FT GIGVPVKFEHIDGEDNLLADTLSRLVVMMLHEEAYTEPLQRILPLLSKKEAVHVLTHKP FT ILKCGCGKTAIRKMSRTSRNPNRHYYCCEQEKCHCWWWEDHLLQFAAERGALEQEALRM FT EELFDRLQFNTNEPHGGPLEDDDQASLLDAVGL" XX SQ Sequence 7543 BP; 2313 A; 1741 C; 1871 G; 1618 T; 0 other; tggtatcaga gccatgtttc tagcgtaaac accttcgggg gcccaaaggg ggcctgacaa 60 tggtgaagtt ttagataagg cgaacttcct tcttatcatc atacttctgt gtagcaatct 120 tattagctta aattgttttc cgagtaaata agttcctcac tagcaaggga aaacctgatc 180 tttgttaagg ggcaaaagag caaaagaccg cagatagccc aagaggggct cagtcgggtg 240 agcttgagtt cctgaaacaa aaggaagggg gacactttct agcaggacta tttaacgagt 300 aaacaatcaa aggctcttga gaaagcgaag ggggttatat gagccagaag gaaggtaagc 360 cgtaataaaa caaaacctaa ggtcaccccc ggggcacccg ttcgtctata agtgtgtttt 420 ctagaaattt ggtattctgt ttatgtccca gagatattgg gaacaaaaac tcgaagaata 480 tcgcaactct catacccaag aggttgcaga tctagcctac cttaaccttg aaggagctga 540 gaaggtcacc cacaaagacc ttgctcacaa cctacgcatc aacacctacc ggcaggatct 600 tgccaataag atcctcgtcg gactaagtca taaacacgcc gcggacatca tccgcgaaat 660 ccacgaagac aaccgcaagc tgcagaataa cctgaaggcc tgtgaaaagg ctttgaagga 720 gcagcaggcg gagctgactg ctgtaaaaag cagcgtccca gctctccgtg aagaactccg 780 caaaatacaa caaagctggt cggagcaccg acctctgtcc aaagacgacg ttgagaaact 840 cgtcttacgc atcagtgaac aaccaaagtt cattgagcaa cagacggagt ccctcatcaa 900 ggagctaacc agcaaggtga gtcgggtgga acacctgatc caccagttgg aaggacgcat 960 ccttggatga gcctccagga gaaaaggcaa aacaaggcct acaaagaagc tttagaagaa 1020 accagaaatc tgtgggacac cgcagtcggt ttcgtcgata aaagcgagat tgtggccaac 1080 atcggcacaa taacaaaaca gctaaatacg gtcctctacc tgctcctcga tttgagcgag 1140 aggatctcca gactcgaaaa ggtagcacct ccccaaacaa aggacatttc caaagatctc 1200 gagaagctcc agaaacaact gtcagggctt cggatctctg aagaaggagg gtcgaacctt 1260 aagcaaaaga aggttcccct tcgcgtcttc agaaaccctt ttgagatctt aaagggggag 1320 atctccacca gtaaatgatg aacaccactc ctcgtgaagt ggaacagccc ctggtcgaag 1380 accagatatg gggctaccga tggacgcaac gagcctgtta tgaggctcag gaggcgggca 1440 ggcggctcgc caatattgga agaactattc tgggaatgca gccaagggag cataccctgg 1500 caatggtgat cgaccctgaa gcggagctgc aacgttcaat gagtgaacgt gccagaaccg 1560 tccctgccga agtcctctac atgacccggc gggataacat ccatcacagg gtctattact 1620 ttcgatgcga ggaaaggatg agggtcctgg acagtgacca gcaagatcgg accttcatca 1680 ctccggaagc tttcgagcat ctgaaggagg cgggattcga gtacatccat ctcggaatcc 1740 tgcaagtaag attccagatt ctacatcggc ggtacgccgg taccatggca ttcatcgcct 1800 acagagacac caggtgggat aacaggaaat ccattatcgc cactatggag gttgacctat 1860 ctgaaggcaa ccaaatagtc tacatcattc cggatatgat gactactatc cgggactgct 1920 atgagcacat tcaaatatca atccgaacca tcggatatga cgacgactgg aatggggagt 1980 ccaacctcct catcacaaga ggaatgacgg cccgactctc caacacacca aatgttgggt 2040 tcgcctacaa catctcccga gttgcggact acttaaagtc caaaggcgtt aaggcaattg 2100 acgcctcaaa agagaagacg acccagttta agggtcgcga atgggtactg aagcccagtc 2160 aagccagcgt cactccaatc atgcctacaa tagcggacgc tcacgaacgc tatgacggaa 2220 gtctaggcat caaatttggt aattatcagg aggccagtac aagcgggccc ccacaataca 2280 atgaacatga cgacgagatc gtagaagatg tagtcctggc aatcatcgac gacctgccag 2340 aagatgacga ggaggactat tttcaacaaa tattaaatga ttaccaacct gactcccagg 2400 ttgcgcttga ttacccagtc ctcattccaa cagaggatcc atttgcatcc tcttatgcac 2460 cactgacacc accggctctt acgccgctac cagcatccgg tgacaacacc cccgacggga 2520 tccgtcccgt cttgcagcga atcgtggtgg gggagaagga tttcaccgat ttcaacaccc 2580 ttgatttcac attgagaggg ttggatgtgg agttacaaac aacggatgac ttcactgcag 2640 aggaggaaga gctgatcggc tccttcctca accaactaga agaagaggag aacctttact 2700 gtaaggaatc tccttcatgt ctattcactg atgacaacaa cggcgatgac gaaggagaac 2760 atcatgtcgt tgccgcttct ctggaatacc cggagttgag aaagatatct gaaatcatca 2820 actccacggt agtagacagc aatccgggaa atcagtatat gataggagat actgatatgg 2880 atggaccacc cgggtatgca ccagcacaag cacaagctgc agcagtacca cctacatatg 2940 gcggtacatc tccatcagta agggggcctt tcaggtggaa gaacccccat gagcattttg 3000 agctaccatc agcacaccag ctgtccgggg caatctttgt catgccccaa aactttgatc 3060 caaaggtttt tgggcggtgg gaatccatcg ttctaaacca tctggcggac agaaacttcc 3120 caaccgcctt agacaagatc atctacgtgg agaacctcct aggggaaatg gagaaaatta 3180 cattccagac ctggaggatg agatacgaag aagaattcgt aagcctgcag acccgagtgc 3240 ttggcaacaa cggcactcag aacctgctcg ctcagatccg aaaggtattc ttcctggagg 3300 atcctaaagg aggaaccact gtttctcagg atgcggccta taaggccatc aagagcttga 3360 cgtgccaaga aatgtccggg caagcaatca ggaagtatat gtcttcctac tttgatctgg 3420 cggcacgatc aggaaggatg tgggtgaatg aggagctatc tgacgacttc ttcaccaagc 3480 tccccatggg tttaggcgac agagtgcgcc aagccttctt atcgaggtac cccggcaaca 3540 caataggggt tccagcaagg atcacattca cccagcaata cctggaagag gtctgtcggg 3600 aggcagccta tcaacgctcc ctaaagaccc tggacttctg caaggaattt ccaatcccga 3660 acttctacaa aggaccccaa aagaagtacg gagtaaggaa gtccaccacc tatcgcggca 3720 aacctcacaa gtcgcatatc aggattgaca agacgaagca cttgaagaac agaaaatgca 3780 agtgctacat ctgcggagaa gaaggacatt ttgcaaggga ttgcaaaaac ccgaagaaga 3840 tcgttgatcg ggttcatgtc ctagaagaac tagacatcca agacggaatg gatgtcgtct 3900 cggtcggaga gaatgaagat gagctctccg atatctactc cgtctctgaa ggagaggaat 3960 ccacacatga ggcataccac gtcttctccc ttgtggaaga ctgcctcatt ggaaaggcca 4020 acacctggag gtaccaggta cgagtttccc cgaaggaata ctattgtaaa cacgagtggg 4080 gattcaactc aaaaattcta aagaactgca gagcctgcgg ggcaacagct caaactggtg 4140 agcgtatgga ttgtcccctt tgtaatatga ctatctgctc ttcctgttcc aattactgct 4200 ttgacataac tatcccaaag aatgaggaaa gagtgcaggc gatagtatca tcctcaacag 4260 catcaaggga agaaagctgg aaaaccatcg ccttggagca gaggaagttg attaagaagc 4320 tggagaatga aaaggaggct ctcatagtag agctaaatca agcattggaa caactgaaac 4380 agacaaaggg aaaagggatt cccgagcatc aggatgatgc gctagaaaag gagctcctaa 4440 aagagcttct gagggaagag aaagagaagg caaagaaggc tgaggaaagc cttcaggaac 4500 ttctgaagga agagaaagag aaggcaaaga aggctgagga aagccttcag gaacttctga 4560 ggaaagaaaa ggaaaaagta aggaaggctg aagaaagcca gaaggagacg gcgctgttag 4620 tagaaaaact gcaagagcag ttacaacaag cgctaagcaa caagactacc tgcaacgaag 4680 aagtacgaga agaggtagct gtgataactg aggaggagaa tctcagttat agcgcaatca 4740 agtctccaac aaggtacaac ggcctgtaca atttaaaggc caaaattgaa gttgaaggag 4800 aaactgtagt tcttaacgcc atcctggaca ctggagctac ggcatgtatc atccaagaag 4860 cgaaggttcc tgatcggccg tgtgaacagg ctgcagtgag ttacaccctt cacggtgtca 4920 actcaaccac atcaggaagg aaagtattga aaggaggcaa gttatggctt ggagaacaat 4980 tcttcaggct tccaaggaca ctagtcgccg acatggtgct aacggaggga gtggagatga 5040 tcgtgggatg taacttccta cgaagtcttg aaggaggact cagaattgaa ggtgaggtag 5100 taacttttta taaattagtt actaatgtgc aatcatgcag aagtacacac gccttcggag 5160 ccatcataga ggagctcgag atggctgagg acgagtacat tgacctcaac ctcatgctag 5220 caacagaacc tgccgtagga gaagaatttg ccaaacttcc cctataccag caattgaagg 5280 ctgaaggatt cattggagaa aatccccttc tccactggca acgaaatcaa gtgatctgtg 5340 aactgcagat caaaaaccct gagttgacga tagaggaccg gcctctgaaa catgtcacgc 5400 cggctctaaa ggaagcaatg cagaagcacg ttgacaagct tctggaattg aaggtgatcc 5460 ggccttcaac gagtagacac cgaacaactg caatgatcgt ctactccgga acggaagtgg 5520 atcccgtaac caagaaggag aagagaggga aagagcgctt ggtgttcaac tataagcgcc 5580 tcaacgacaa tactgagaag gatcaatatt cactcccagg tatttctacg atccttcaga 5640 aaattggcca ctcaaaaatt tattcaaaat tcgaccccaa gagcgggttt catcaagtgg 5700 ctatgcaccc tgactccgtt ccatggaccg cattctgggc cattaacggc ctttatgaat 5760 ggttggtgat gccttttggg cttaaaaatg caccagcggt ctttcaaaga aaaatggatc 5820 attgctttag aggcacagaa gactttattg ctgtctacat agacgatatc ttagtcttct 5880 ctgagacccc tgagcagcac aaaaagcatc tggagatttt cctccagata gccaggaaga 5940 atgggcttgt gttaagccca acaaaaatga aagtgggagt tcagcaagtg gacttcctag 6000 gagctacaat tggaaattca cgcatccggc tccagcctca tattatccag aaggtcgttc 6060 aatttgacaa caaggacctt caaacaacaa aaggactccg aagcttcctc ggaatactga 6120 attacgcaag gagttatata cctcaaatgg ggaaattgct cggtcccctg tactcgaagg 6180 tttctccaac tggagaaaag aggatgaaca aacaagattg ggcgatcatt gaaaagatca 6240 agcaaatggt ggaacaattg cccgagttag agcttcctcc caacggttcg gtaatagtca 6300 tagagacgga tggatgtatg gaaggatggg gaggtatctg caagtggaaa ttcccaggcg 6360 ccccaaggaa tcaagaaaag gtgtgtgcct atgcaagcgg gcgatttcag ccaatcaaaa 6420 gtactatcga tgcagagatc caggcggtga tcaacagcct ggataaattc aaaatttatt 6480 atctgaatca gaaggagctc gttgtgcgaa cggactgcca ggcgatcgta tccttctacg 6540 agaaaatggc taacaacaag ccatcacggg taaggtggct aactttctct gactttatta 6600 caggcatagg agtccctgta aagtttgaac acatcgacgg cgaggataat ctattagcag 6660 acacattatc aaggttggta gtgatgatgc tgcatgaaga ggcgtatacg gaacctcttc 6720 aacgaatcct cccccttctg tcaaagaagg aggcagtaca cgtgctcacc cataagccga 6780 tactcaaatg tggttgcggg aaaacagcaa tcagaaaaat gtcccgcacc tcgaggaacc 6840 caaatcggca ctactactgc tgtgagcagg agaaatgcca ctgctggtgg tgggaggatc 6900 acctgctaca atttgctgct gagagaggag cgctagaaca agaagcgcta aggatggagg 6960 agcttttcga caggctccaa ttcaacacca acgaaccgca tggaggacca ctcgaagacg 7020 atgaccaggc ctccttactg gacgcggttg gcttatgaag cgggcgtggt aggcccataa 7080 tttattattt taaagacaat cgggcttttg gctctggttt tgggccttgg ccctggtttg 7140 taataatatt atttggccct ttatcactac caggacagct gttcctggaa aaactgtggc 7200 ccattacttt ttaaggcgcc cctggttttg tgcgcccatg gtttttgctt tctggtttag 7260 catcttgtaa agaagcggta ttatgtgctt tgaggacaag caaagtgacg atgaggcccc 7320 acgagtactc ggctttgctt accatcaacg caagaaagat accctttctg cctatataag 7380 gacttagttt agctcattgc taagcatcga agcagaactt cagttgctta ctttgagaga 7440 tattgtaaga gtttccatct atatataaaa tttctgagtg tttgctagtt tctttctgaa 7500 atcttttgag agtaggaaag cgatcaaagg gcgcgaaaaa tcc 7543 //