ID   GU119904; SV 1; linear; genomic RNA; STD; VRL; 2406 BP.
XX
AC   GU119904;
XX
DT   22-MAR-2011 (Rel. 108, Created)
DT   14-DEC-2012 (Rel. 115, Last updated, Version 3)
XX
DE   Pepino mosaic virus isolate CY-PepMV-Odou RNA-polymerase RNA-dependent
DE   (RdRp) gene, partial cds; and triple gene block protein 1 (TGBp1), triple
DE   gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat
DE   protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-2406
RX   AGRICOLA; IND44682785.
RA   Papayiannis L.C., Kokkinos C.D., Alfaro-Fernandez A.;
RT   "Detection, characterization and host range studies of Pepino mosaic virus
RT   in Cyprus";
RL   Eur. J. Plant Pathol. 132(1):1-7(2012).
XX
RN   [2]
RP   1-2406
RA   Alfaro-Fernandez A., Papayiannis L.;
RT   ;
RL   Submitted (19-OCT-2009) to the INSDC.
RL   Virologia Vegetal, Instituto Agroforestal Mediterraneo, Cno. Vera, s/n,
RL   Valencia 46022, Spain
XX
DR   MD5; 3cf1b1bc4a7162027f697ae1102166fe.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2406
FT                   /organism="Pepino mosaic virus"
FT                   /host="tomato"
FT                   /isolate="CY-PepMV-Odou"
FT                   /mol_type="genomic RNA"
FT                   /country="Cyprus"
FT                   /collection_date="Mar-2009"
FT                   /db_xref="taxon:112229"
FT   gene            <1..461
FT                   /gene="RdRp"
FT   CDS             <1..461
FT                   /codon_start=3
FT                   /gene="RdRp"
FT                   /product="RNA-polymerase RNA-dependent"
FT                   /db_xref="UniProtKB/TrEMBL:F2VIT8"
FT                   /protein_id="ADD91551.1"
FT                   /translation="IAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLT
FT                   SKTLYPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKH
FT                   SYQMGDQLHDYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT   gene            487..1191
FT                   /gene="TGBp1"
FT   CDS             487..1191
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /db_xref="GOA:Q334F6"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q334F6"
FT                   /protein_id="ADD91552.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            1172..1543
FT                   /gene="TGBp2"
FT   CDS             1172..1543
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /db_xref="GOA:F2VIT5"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:F2VIT5"
FT                   /protein_id="ADD91553.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSSSISRNTHQH
FT                   HCYNAHSATQTGQSVPGHH"
FT   gene            1395..1643
FT                   /gene="TGBp3"
FT   CDS             1395..1643
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /db_xref="GOA:F2VIT6"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:F2VIT6"
FT                   /protein_id="ADD91554.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKRVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1688..2401
FT                   /gene="CP"
FT   CDS             1688..2401
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q2UVL7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT                   /protein_id="ADD91555.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 2406 BP; 721 A; 577 C; 441 G; 667 T; 0 other;
     cgattgcata cactgccaca agattccata ttgacaatac tgttaagcaa gtgtatgccg        60
     gtgacgacat ggcattagat ggagttgtga gtgaaaagaa atcattcagg aagttacaaa       120
     atctactaaa actcacttca aaaacgctgt acccaaaaca ggttaaaggg gattacgctg       180
     aattttgtgg ttggactttc acaccagggg gtataattaa aaatccactt aaaatgcatg       240
     cctcaattat gcttcaagaa gccattggca atctgcacac agcagccaga tcttatgcaa       300
     ttgacatgaa gcattcatac caaatgggtg accaactgca tgactaccta acccccgatg       360
     aagctgaaca acattttcta gctgtgagaa agcttcacaa actccatcaa ggcgaggcca       420
     tgcgtcttgg ggagaaaagt ccaccaagat caacccatta aggggttaag ttttccccag       480
     tttgaaatgg aaagatcaac tttgatcaat ttacttctgt tacacaaatt tgaacacaag       540
     attaacactg aaggaatcat tgttgtgcac ggaattgctg gaactgggaa aaccacattg       600
     cttaggactt tattttctgc ataccctagc ttagttatag gttcacctag gccttgttac       660
     ttagataaag ctaataaaat ttcacaagtt tgcctttctt gtttcccaaa taccttgtgt       720
     gacattgttg acgagtacca tctcttagaa agttttcctg aaccaaaact agccattttt       780
     ggtgacccct gtcagtgcac ttacattgaa aggttgagaa cccccaacta cacatccttc       840
     agaacacacc gatttggcaa atccactgct gctctactaa acaagttatt tgatcttaac       900
     attgagtcag ttaaagcaca agacgacaca gtagaatact ttgatccttt cgcagtggac       960
     ccctctgaac atatttctgc ttcagaaaaa gaagttttgg aatttgtagg tgatcaagtt      1020
     gagactacaa gctctgaaga actagctggt ctcgagttta gtgaagttac tttctactgt      1080
     accacacttg ctggtgctgt ccaagaaaat cctgccaaaa ccttcatttc actcactaga      1140
     cacacttcaa agctcacaat tggtgaacta aatgccaggt ctgactccta gagctgatct      1200
     tactgacacg tataaaatca ttgctatagc ctttctactg tcagcttgca tttacttcca      1260
     aaacagtcat tatcaaccag ttgcaggtga taatttgcac agactaccct ttggtggtca      1320
     gtatcaagac ggaactaaga agatttctta ctttccgcag caacaatcct actttcactc      1380
     aggaaacaag cttaatgtcc tcatacttat cttcattctt acactgggta ttgtcctcac      1440
     caataaattt agttctagca ttagccgtaa tactcaccag catcattgct acaacgcaca      1500
     ttctgcaacc caaacgggtc aatcagtgcc aggtcatcat tgacggtgca gccatagtta      1560
     taacaaattg tccaaacaca cccgaagttc ttaaagcaat caacttctcc ccttggaacg      1620
     ggttaagttt tcctcaattg tgaaatcata tttgttatct agttaaattc aaaaatttaa      1680
     ctcgactatg gaaaaccaac ctacagcttc taacccatca gatgtaccac caactgctgc      1740
     tcaagctggt gcccagagcc cagccgactt ctcaaatcct aatacagctc cttccctaag      1800
     tgatttgaag aagatcaaat acgtgtcaac tgtcacttca gttgccacgc ctgctgaaat      1860
     tgaggccctt ggcaagatct ttactgccat gggtttagca gccaatgaga ccggacctgc      1920
     catgtgggac ctcgctcgtg cttatgctga tgtgcaaagt tcaaaatctg cacaacttat      1980
     aggtgccaca ccatccaacc ctgctttgtc tagacgtgca cttgctgcac agtttgatcg      2040
     tatcaatatc acacccagac aattctgcat gtattttgct aaaattgttt ggaacatact      2100
     gttagacagc aatgtgccac ctgccaactg ggcaaaattg ggctatcagg aagataccaa      2160
     gtttgctgct tttgacttct ttgatggagt cacaaatcca gctagtctac agcctgctga      2220
     tggcctaatc aggcagccca atgaaaaaga gcttgctgct cactcggttg ctaaatatgg      2280
     tgcccttgcc cgccagaaaa tatccactgg taactacatc accacccttg gtgaagttac      2340
     acgtggtcac atgggcggcg ccaacactat gtacgcaatt gatgcacctc ctgaacttta      2400
     aacact                                                                 2406
//