ID GU112088; SV 1; circular; genomic DNA; STD; VRL; 2742 BP. XX AC GU112088; XX DT 02-JAN-2011 (Rel. 107, Created) DT 20-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Tomato leaf curl New Delhi virus [India:Aurangabad:OY164A:2006] segment DE DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus [India:Aurangabad:OY164A:2006] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2742 RX DOI; 10.1007/s11262-012-0732-y. RX PUBMED; 22447131. RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S., RA Krishna Reddy M.; RT "Molecular characterization of distinct bipartite begomovirus infecting RT bhendi (Abelmoschus esculentus L.) in India"; RL Virus Genes 44(3):522-535(2012). XX RN [2] RP 1-2742 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT "Molecular genetic diversity of begomoviruses infecting okra in India"; RL Unpublished. XX RN [3] RP 1-2742 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT ; RL Submitted (12-OCT-2009) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India XX DR MD5; 5cb9e5cf0080b73201b2ad28321e4b7e. DR EuropePMC; PMC3125359; 21676270. DR EuropePMC; PMC3824786; 28324417. XX CC GenBank Accession Numbers GU112088-GU112089 represent the complete CC genome of Tomato leaf curl New Delhi virus CC [India:Aurangabad:OY164A:2006]. XX FH Key Location/Qualifiers FH FT source 1..2742 FT /organism="Tomato leaf curl New Delhi virus FT [India:Aurangabad:OY164A:2006]" FT /segment="DNA-A" FT /host="Abelmoschus esculentus (okra)" FT /isolate="OY164A" FT /mol_type="genomic DNA" FT /country="India:Aurangabad, Maharashtra" FT /isolation_source="infected leaf" FT /collected_by="M.Krishnareddy" FT /collection_date="Jul-2006" FT /db_xref="taxon:908116" FT gene 122..460 FT /gene="AV2" FT CDS 122..460 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:E7BQ55" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E7BQ55" FT /protein_id="ADO41079.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVRYLQEIEKNYSPDTIGYDLIRDL FT ILVLRAKNYGEATSRYHHFNARIESTPSSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 282..1052 FT /gene="AV1" FT CDS 282..1052 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7BQ56" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E7BQ56" FT /protein_id="ADO41080.1" FT /translation="MVKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGRVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRGRYQVLRKWHATVTGGTYASKEQALVSKFVRVNNYGVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(312..797) FT /gene="AC5" FT CDS complement(312..797) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:E7BQ57" FT /protein_id="ADO41081.1" FT /translation="MHVLHRCCARFIVKHIKHFPEILGRSCRTTVTNQKKHDTVSMVFR FT LDVLIHPYLTQHINRFHTKSLPYAMCESSSSGNITNTHDSANMRDIVPRFERLHFTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIGAVEVETTAYFRCGR" FT gene complement(1049..1459) FT /gene="AC3" FT CDS complement(1049..1459) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E7BQ58" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7BQ58" FT /protein_id="ADO41082.1" FT /translation="MITDSRTGEYITVDRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGI FT YNVIRAVYHVLDNVLQQTRFGWTSYDIKLDIY" FT gene complement(1179..1598) FT /gene="AC2" FT CDS complement(1179..1598) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E7BQ59" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7BQ59" FT /protein_id="ADO41083.1" FT /translation="MQSSSHSRNHSIPVAKSSLPQKKKKSIRRRRVDLPCGCSYYTSIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQPALPNTARHNQDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQDPGP" FT gene complement(1501..2586) FT /gene="AC1" FT CDS complement(1501..2586) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:E7BQ60" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7BQ60" FT /protein_id="ADO41084.1" FT /translation="MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK FT ICPELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVVEWGVFQIDGRSARGGQKTANDAYAQAINTGNKDDALKVIKELAPKDYVLQFH FT NLITNLDRIFQPRSEIYVSPFSILSFDRVPPELVDWVSSNVVCAAARPFRPISVVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWTIKNAVFITLEEPL FT YSGREIIAPPEEEEEHSQEAS" FT gene complement(2127..2429) FT /gene="AC4" FT CDS complement(2127..2429) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7BQ61" FT /protein_id="ADO41085.1" FT /translation="MGHRISMFLSNSRENSNARITDSSTWCPQVGQHISIRTFRELNQH FT RTSKRTSTKTETSLSGVFSRSMDDLLVVVRKQQTMHMLRRLTQEIKMMPLKSLKS" XX SQ Sequence 2742 BP; 748 A; 586 C; 606 G; 802 T; 0 other; accgaatggc cgcgcaaatt ttttaggtgg gacctctacc aatgaaattc gcgctacatg 60 gcttctttaa tgcatgtggg tcctttacat agacttgctc accaagtttg gatccacaaa 120 catgtgggat ccattattgc acgaatttcc agaaagcgtt catggtctaa ggtgcatgtt 180 agctgtaaga tatctccaag agatagaaaa gaactattca ccagacacaa tcggctacga 240 tcttatccga gatctcattc ttgttctccg agcaaagaac tatggtgaag cgaccagcag 300 atatcatcat ttcaacgccc gcatcgaaag tacgccgtcg tctcaacttc gacagcccct 360 atggagctcg tgcagttgtc cccattgccc gcgtcacaaa agcaaaggcc tggaccaaca 420 ggccgatgaa cagaaaaccc agaatgtaca gaatgtatag aagtcccgac gtgccaaggg 480 gctgtgaagg cccttgtaaa gtgcagtctt tcgaatctag gcacgatgtc tctcatattg 540 gcagagtcat gtgtgttagt gatgttaccc gaggaactgg actcacacat cgcgtaggga 600 agcgattttg tgtgaaatct gtttatgtgc tgggtaagat atggatggat gagaacatca 660 agacgaaaaa ccatactaac agtgtcatgt tttttttggt tcgtgaccgt cgtcctacag 720 gatcgcccca agatttcggg gaagtgttta atatgtttga caatgaaccg agcacagcaa 780 cggtgaagaa catgcatcgt ggtcgttatc aagtcttacg gaagtggcat gcgactgtga 840 cgggaggaac atatgcatct aaggagcaag cattagttag caagtttgtt agggttaata 900 attatggagt ttataatcaa caagaggccg gcaagtatga gaatcatact gaaaacgcat 960 taatgttgta tatggcctgt actcatgcat caaatcctgt atatgctact ttgaaaatcc 1020 ggatctattt ctatgattcg gtcacaaatt aataaatatc aagttttata tcatatgaag 1080 tccatccaaa tcttgtctgt tgcaatacat tatccaatac atgatacaca gctcttatta 1140 cattataaat tcctatgaca cctaacatat ccaggtactt aaggacctgg gtcttgaaga 1200 ctctcaagaa aatcccaatc tgagggcgta agcccgtcca gattttgaaa gttagaaaac 1260 acttgtgaag tcccagggct ttccgcaggt tgtggttgaa ctgtatttga atcttgatta 1320 tgtcgtgctg tgttaggaag ggccggctgt cgtgtttcaa aattttgaaa tacaggggat 1380 ttcgaatttc ccaggtatat acgccactct ctgctcgatc cacagtgatg tattcccctg 1440 tgcgtgaatc cgtgatcatg gcagttgatc gatgtgtaat acgaacaacc acacggtaga 1500 tcaactcgcc tcctgcgaat gctcttcttc ttcttctggg ggagcgatga tttcgcgacc 1560 ggaatagagt ggttcctcga gtgtgatgaa gactgcattc ttgattgtcc actgcttcag 1620 tgctgcattt ttttcttcat ccagatattc cttatagctg ctgtttggac ctttattgca 1680 caggaagata gtgggaattc cacctttaat catgaccggc tttccgtact tcgtattgct 1740 ttgccagtca cgctgggccc ccatgaattc tttaaaatgc tttagatagt ggggatcgac 1800 gtcatcaatg acgttgtacc atgcatcatt gctatacacc tttgggctca gatctagatg 1860 tccacacaag taattgtgtg gtcctaagca acgagcccac attgttttgc ccgtcctact 1920 atccccctct atgactacac ttattggtct aaaaggccgc gcagcggcac acactacatt 1980 cgacgagacc caatcgacga gttctggcgg aactctgtcg aaggataaaa ttgaaaatgg 2040 agaaacataa atctcggaac gaggttgaaa aatgcgatct aaatttgtaa ttaaattgtg 2100 aaactgcaga acataatcct ttggtgctaa ctctttaatg actttaaggg catcatcttt 2160 atttcctgtg ttaatcgcct gagcatatgc atcgtttgct gttttctgac caccacgagc 2220 agatcgtcca tcgatctgga aaacacccca ctcaacgacg tctccgtctt tgtcgatgta 2280 cgctttgacg tccgatgctg atttagctcc ctgaatgttc ggatggaaat gtgctgaccg 2340 acttggggac accaagtcga agaatctgtt attcttgcat tggaattttc cctcgaattg 2400 gataagaaca tggatatgcg gtgacccatc ctcatgaagc tctggacaga tcttgatgaa 2460 tttcttcgaa gtgggggttt ctagggtttg caattgggaa agtgcctctt cctttgtaag 2520 agagcacttt ggatatgtga ggaagtagtt ttttgcattt attctaaaac gacttggcgg 2580 agccataaaa cttgtcgttt cgatccggtg tctctcaact ttctctatgt aattggtgtc 2640 tggagtccca tatataggta agacaccata tggcataatt gtaatttcag aaaagaaatt 2700 actttaattc aaattcacta aagcggccat tcgtataata tt 2742 //