Dbfetch
ID GU112084; SV 1; circular; genomic DNA; STD; VRL; 2743 BP. XX AC GU112084; XX DT 02-JAN-2011 (Rel. 107, Created) DT 20-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Tomato leaf curl New Delhi virus [India:Bangalore:OY135:2005] segment DE DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus [India:Bangalore:OY135:2005] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2743 RX DOI; 10.1007/s11262-012-0732-y. RX PUBMED; 22447131. RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S., RA Krishna Reddy M.; RT "Molecular characterization of distinct bipartite begomovirus infecting RT bhendi (Abelmoschus esculentus L.) in India"; RL Virus Genes 44(3):522-535(2012). XX RN [2] RP 1-2743 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT "Molecular genetic diversity of begomoviruses infecting okra in India"; RL Unpublished. XX RN [3] RP 1-2743 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT ; RL Submitted (09-OCT-2009) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India XX DR MD5; 6e2a0e62694bae3938b2d71cc1f3552d. DR EuropePMC; PMC3125359; 21676270. XX CC GenBank Accession Numbers GU112084-GU112085 represent the complete CC genome of Tomato leaf curl New Delhi virus CC [India:Bangalore:OY135:2005]. XX FH Key Location/Qualifiers FH FT source 1..2743 FT /organism="Tomato leaf curl New Delhi virus FT [India:Bangalore:OY135:2005]" FT /segment="DNA-A" FT /host="Abelmoschus esculentus cultivar Arka Anamika (okra)" FT /isolate="OY135" FT /mol_type="genomic DNA" FT /country="India:Bangalore, Karnataka" FT /isolation_source="infected leaf" FT /collected_by="M.Krishnareddy" FT /collection_date="Jul-2005" FT /db_xref="taxon:908117" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:E7BQ37" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E7BQ37" FT /protein_id="ADO41061.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVPRAKNYVEATSRYRHFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7BQ38" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E7BQ38" FT /protein_id="ADO41062.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYLLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGTPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(310..795) FT /gene="AC5" FT CDS complement(310..795) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:E7BQ39" FT /protein_id="ADO41063.1" FT /translation="MHVLHRCCARFIVKHIKHFPKILRGSCRTTVTNKEKHDTISMVFR FT LDVFIHPNLSQQIDRFHTKSLPYAMCESGSSGNITNTHNFTNMRYIVPRFKRLHFAGAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGDNCTSSIGAVEVETSAYFRCGR" FT gene complement(1047..1457) FT /gene="AC3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E7BQ40" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7BQ40" FT /protein_id="ADO41064.1" FT /translation="MITDSRTGEYITVDRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIITIQIQFNHNLRKALGLHKCFLTFKIWTGLRPPIGLFLKVFKTQVLKYLDMLGVIGI FT NNVIRAVYHVLDNVLEQTIEVWTSYDIKLDIY" FT gene complement(1177..1596) FT /gene="AC2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E7BQ41" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7BQ41" FT /protein_id="ADO41065.1" FT /translation="MQSSSHSRNHSIPVAKSSLPQKKKKSIRRRRVDLPCGCSYYTSIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQPALPNTARHNNDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWAFLESLQNPGP" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:E7BQ42" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7BQ42" FT /protein_id="ADO41066.1" FT /translation="MASPSRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDVVEWGVFQIDGRSARGGQKTANDAYAQAINTGNKDDALKVIKELAPKDYVLQFH FT NLITNLDRIFQPRSEIYVSPFSILSFDRVPPELVDWVSSNVVCAAARPFRPISVVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWTIKNAVFITLEEPL FT YSGREIIAPPEEEEEHSQEAS" FT gene complement(2125..2427) FT /gene="AC4" FT CDS complement(2125..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7BQ43" FT /protein_id="ADO41067.1" FT /translation="MGHRISMFLSNSRENSNARITDSSTWCPQVGQHISIRTFRELNQH FT RTSKRTSTKTETSLSGVFSRSMDDLLVVVRKQQTMHMLRRLTQEIKMMPSKSLKS" XX SQ Sequence 2743 BP; 753 A; 580 C; 608 G; 802 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg acctcaacca atgaaattcg ggctacatgg 60 cttctataat gcatatggag caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tcttcaagag atagagaaga actattcccc agacacagtc ggttacgatc 240 ttgtccgaga tctgattctt gttccgagag caaagaacta tgtcgaagcg accagcagat 300 atcgtcattt caacgcccgc atcgaaagta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cctgcaaagt gcagtctttt gaatcgaggc acgatgtatc tcatattggt 540 aaagttatgt gtgttagtga tgttacccga ggaaccggac tcacacatcg cgtagggaag 600 cgattttgtg tgaaatctgt ctatctgctg ggaaagattt ggatggatga aaacatcaag 660 acgaaaaacc atactaatag tgtcatgttt ttccttgttc gtgaccgtcg tcctacagga 720 acccctcaag attttgggga agtgtttaat atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtgttgagga agtggcatgc aactgtgacc 840 ggaggaacat acgcatctag ggagcaagcg ttggttagga agtttgttag ggttaataat 900 tatgtagttt ataatcaaca agaggccggc aagtatgaga atcatactga aaacgcattg 960 atgttgtata tggcctgtac tcatgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctattttt atgattcggt cacaaattaa taaatatcta gttttatatc atatgaagtc 1080 catacttcaa tcgtttgttc cagtacatta tccaatacat gataaactgc tcttattaca 1140 ttattaattc ctatgacacc taacatatcc aggtacttaa ggacctgggt tttgaagact 1200 ttcaagaaaa gcccaatcgg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact gtatttgaat cgttattatg 1320 tcgtgctgtg ttaggaaggg ccggctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatcca cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tgtgtaatac gaacaaccac acggtagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgatt tcgcgaccgg 1560 aatagagtgg ttcctcgagt gtgatgaaga ctgcattctt gattgtccac tgcttcagtg 1620 ctgcattttt ttcttcatcc agatattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgaccggctt tccgtacttc gtattgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaaatgctt tagatagtgg ggatcgacgt 1800 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga tctagatgtc 1860 cacacaagta attgtgtggt cctaagcaac gagcccacat tgttttgccc gtcctactat 1920 ccccctctat gactacactt attggtctaa aaggccgcgc agcggcacac actacattcg 1980 acgagaccca atcgacgagt tctggcggaa ctctgtcgaa ggataaaatt gaaaatggag 2040 aaacataaat ctcggaacga ggttgaaaaa tgcgatctaa atttgtaatt aaattgtgaa 2100 actgcagaac ataatccttt ggtgctaact ctttaatgac tttgagggca tcatctttat 2160 ttcctgtgtt aatcgcctga gcatatgcat cgtttgctgt tttctgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccact caacgacgtc tccgtctttg tcgatgtacg 2280 ctttgacgtc cgatgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggacac caagtcgaag aatctgttat tcttgcattg gaattttccc tcgaattgga 2400 taagaacatg gatatgcggt gacccatcct catgaagctc tcgacagatc ttgatgaatt 2460 tcttcgaagt gggggtttct agggtttgca attgggaaag tgcctcttcc tttgtaagag 2520 agcactttgg atatgtgagg aaatagtttt tcgcatttat tctaaaacga cttggcgaag 2580 ccataaaact tgtcgtttcg atccggtgtc tctcaacttt ctctatgtaa ttggtgtctg 2640 gagtcccata tataggtaag acacctatat tggcataatt gtaatttcaa ataataaaat 2700 tactttaatt tcaattcact aaagcggcca ttcgtataat att 2743 //