ID GU112082; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC GU112082; XX DT 02-JAN-2011 (Rel. 107, Created) DT 20-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Tomato leaf curl New Delhi virus [India:Karnal:OY81A:2004] segment DNA-A, DE complete sequence. XX KW . XX OS Tomato leaf curl New Delhi virus [India:Karnal:OY81A:2004] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RX DOI; 10.1007/s11262-012-0732-y. RX PUBMED; 22447131. RA Venkataravanappa V., Lakshminarayana Reddy C.N., Jalali S., RA Krishna Reddy M.; RT "Molecular characterization of distinct bipartite begomovirus infecting RT bhendi (Abelmoschus esculentus L.) in India"; RL Virus Genes 44(3):522-535(2012). XX RN [2] RP 1-2740 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT "Molecular genetic diversity of begomoviruses infecting okra in India"; RL Unpublished. XX RN [3] RP 1-2740 RA Venkataravanappa V., Lakshiminarayanareddy C.N., Devaraju, Swaranalatha P., RA Jalali S., Krishnareddy M.; RT ; RL Submitted (09-OCT-2009) to the INSDC. RL Division of Plant Pathology, Indian Institute of Horticultural Research, RL Hessaraghatta Lake PO, Bangalore, Karnataka 560089, India XX DR MD5; 31d94625a103233ba1dcde45d0d039b3. DR EuropePMC; PMC3824786; 28324417. XX CC GenBank Accession Numbers GU112082-GU112083 represent the complete CC genome of Tomato leaf curl New Delhi virus CC [India:Karnal:OY81A:2004]. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Tomato leaf curl New Delhi virus FT [India:Karnal:OY81A:2004]" FT /segment="DNA-A" FT /host="Abelmoschus esculentus cultivar US7109 (okra)" FT /isolate="OY81A" FT /mol_type="genomic DNA" FT /country="India:Karnal, Haryana" FT /isolation_source="infected leaf" FT /collected_by="M.Krishnareddy" FT /collection_date="Apr-2004" FT /db_xref="taxon:908119" FT gene 120..458 FT /gene="AV2" FT CDS 120..458 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:E7BQ28" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E7BQ28" FT /protein_id="ADO41052.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYVEATSRYRHFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGMDQQADEQ FT KTQNVQNV" FT gene 280..1050 FT /gene="AV1" FT CDS 280..1050 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7BQ29" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E7BQ29" FT /protein_id="ADO41053.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYLLGKIWMDENIKTNNHTNSVMFFLVRDRRPTGKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEASKYENH FT TENALMLYMACAHASNPVYATLKIRIYFYDSVTN" FT gene complement(310..795) FT /gene="AC5" FT CDS complement(310..795) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:E7BQ30" FT /protein_id="ADO41054.1" FT /translation="MHVLHRCCAGFIVKHIKHFPKILWFTCRSSITNKEKHHRIRMVVG FT LDVFVHPYLTQQIDRFHTKSLPYAMCESGSSGNITNTHNFTDMRYIVPRFKRLHFAGAF FT TAPWHVGTSIHSVHSGFSVHRPVGPCLCFCDAGNGDNCTSSIGAVEVETSAYFRCGR" FT gene complement(1047..1451) FT /gene="AC3" FT CDS complement(1047..1451) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E7BQ31" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7BQ31" FT /protein_id="ADO41055.1" FT /translation="MDSRTGEYITVDRAESGVYTWEIRNPLYFKILKHDSRPFLTQHDI FT IKIQIQFNHNLRKALGLHKCFLTFQIWTSLRPQIGILLRVFKAQVLKYLDMLGVISINN FT VIRAVYHVLDNVLEQTIDVWTSYDIKLDIY" FT gene complement(1144..1596) FT /gene="AC2" FT CDS complement(1144..1596) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E7BQ32" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7BQ32" FT /protein_id="ADO41056.1" FT /translation="MQSSSHSRNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYTSIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQPALPNTARHNQDSNTVQPQP FT AESSGASQVFSNFPNLDELTPSDWDSLKGLQSPGPQIPGYVRCHIN" FT gene complement(1499..2584) FT /gene="AC1" FT CDS complement(1499..2584) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:E7BQ33" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7BQ33" FT /protein_id="ADO41057.1" FT /translation="MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLQTLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVSPSRSAHFHPNIQGAKSASDVKAYI FT DKDGDILEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDEALKVIRELAPKDYVLQFH FT NLITNLDRIFQPRSEVYVSPFSISSFDRVPPELVDWVSENVVCAAARPFRPISVVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWTIKNAVFITLEEPL FT YSGRENIAPPEEEEEHSEEAS" FT gene complement(2125..2427) FT /gene="AC4" FT CDS complement(2125..2427) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7BQ34" FT /protein_id="ADO41058.1" FT /translation="MGHRISMFLSNSRENSNARITDSSTWCPQVGQHISIRTFRELNQH FT RTSKRTSTKTETSSNGVFSRSMDDLLVVVSKQQTMHMLRRLTQEIKMRPLKSLGS" XX SQ Sequence 2740 BP; 749 A; 585 C; 613 G; 793 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg acctcaacca atgaaattcg ggctacatgg 60 cttctataat gcatatggag caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctaagg tgcatgctag 180 ctgtaaaata tcttcaagag atagagaaga actattcccc agacacagtc ggttacgatc 240 ttgtccgaga tctgattctt gttcttcgag caaagaacta tgtcgaagcg accagcagat 300 atcgtcattt caacgcccgc atcgaaagta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttgtccc cattgcccgc gtcacaaaag caaaggcatg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cctgcaaagt gcagtctttt gaatcgaggc acgatgtatc tcatatcggt 540 aaagttatgt gtgttagtga tgttacccga ggaaccggac tcacacatcg cgtagggaag 600 cgattttgtg tgaaatctgt ctatctgctg ggtaagatat ggatggacga aaacatcaag 660 accaacaacc atacgaattc ggtgatgttt ttccttgttc gtgatcgacg accgacaggt 720 aaaccacaag attttgggga agtgtttaat atgtttgaca atgaacccag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttaccaa gtgttgagga aatggcatgc aaccgtgacc 840 ggaggaacat acgcatctag ggagcaagcg ttggttagga agtttgttag ggttaataat 900 tatgttgttt acaatcaaca agaggccagc aagtacgaga atcatactga gaatgcgttg 960 atgctttata tggcttgtgc ccatgcatca aatcctgtgt atgctacttt gaaaatccgg 1020 atctattttt atgattcggt cacaaattaa taaatatcaa gctttatatc atatgaagtc 1080 catacatcaa ttgtctgttc caatacatta tccaatacat gataaactgc tcttattaca 1140 ttattaattg atatgacacc taacatatcc aggtatttga ggacctgggc tttgaagacc 1200 cttaagagaa tcccaatctg agggcgtaag ctcgtccaga tttggaaagt tagaaaacac 1260 ttgtgaagcc ccagagcttt ccgcaggttg tggttgaact gtatttgaat cttgattatg 1320 tcgtgctgtg ttaggaaggg ccggctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatcca cagtgatgta ttcccctgtg 1440 cgtgaatcca tgatcatggc agttgatcga tgtgtaatac gaacaaccac acggtagatc 1500 aactcgcctc ctccgaatgc tcttcttctt cttctggggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcctcgagt gtgatgaaga ctgcattctt gattgtccac tgcttcagtg 1620 ctgcattttt ttcttcatcc aggtattcct tatagctgct gtttggacct ttattgcaca 1680 ggaagatagt gggaattcca cctttaatca tgaccggctt tccgtacttc gtattgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaaatgctt tagatagtgg ggatcgacgt 1800 catcaatgac gttgtaccag gcatcattgc tatacacctt tgggctcaga tctagatgtc 1860 cacacaagta attgtgtggt cctaagcaac gagcccacat tgttttgccc gtcctactat 1920 ctccctctat gactacactt attggtctaa aaggccgcgc agcggcacac actacattct 1980 cagataccca atcgacgagt tctggcggaa ctctgtcgaa ggaagaaatt gaaaatggag 2040 aaacataaac ctcggatcga ggttgaaaaa tgcgatctaa atttgtaatt aaattgtgaa 2100 actgcagaac ataatccttt ggtgctaact ccctaatgac tttaagggcc tcatctttat 2160 ttcctgtgtt aatcgcctga gcatatgcat cgtttgctgt ttgctgacca ccacgagcag 2220 atcgtccatc gatctggaaa acaccccatt cgaggatgtc tccgtctttg tcgatgtacg 2280 ctttgacgtc cgatgctgat ttagctccct gaatgttcgg atggaaatgt gctgaccgac 2340 ttggggacac caagtcgaag aatctgttat tcttgcattg gaattttccc tcgaattgga 2400 taagaacatg gatatgcggt gacccatcct catgaagctc tcgacagatc ttgatgaatt 2460 tcttcgaagt tggggtttct agggtttgca attgggaaag tgcctcttcc tttgtaagag 2520 agcactttgg atatgtgagg aaatagtttt tcgcatttat tctaaaacga cttggcggag 2580 ccataaaact tgacgtttcg atccggtgtc tctcaacttc ttctatgtaa ttggtgtctg 2640 gagtcccata tataggtgag acactatatg gcataattgt aattttggaa agaaaattac 2700 tttaattcaa attccctaaa gcggccattc gtataatatt 2740 //